Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 7878 cluster # 7878       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7878#0 length = 2872 sequences # 3  
consensus_7878#1 length = 553 sequences # 2  

consensusID : consensus_7878#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 2872
fasta sequence
                              [ATTAGTTTACATTTAANGCTTCCAAATGGTGTGTNCGGTATACTTCAAAAANCTTTACACCCAAAGAANCTAAACACACCCTTTGGTTGGCTGAGTTTCTTCGGNCGATCTTAAGCAATTTCCAAAAATGGTCTTATTCCCCTTCACTGTTTAGTCTTGGGATTTTGGAACACAGTCACTGCATTTTTTGTACCAGCATCACTCCATATTTTTATTTACTTTATCCCAGCCAAACATCCACTTTATTTTCTTATATTCCAAAGGGGACAAACGAGGCAAAGNAAAAGAAATAACAGCGCCGGCAGAGGGAAATGAAAAGAAAAGGGGTAGTGGACGAGAGAGCAGGAGCAGTGGTGGCAATGGCACCAAAGGCAAAGAAGGCCCCAATTCCCAACCACCGCCACCTCCCTCCTCCTCATCAAGCATTCAGGCTCTCCTATCCCAAAATGCTTTGCTTTCCAAGCAAGCACACTCCCTCTCTGCTTTGGAGATTAGCTCTCGTTTCTCTTAGTAGCAGCAGCTGGTGTGGCAGCATCTCATCTCATGATCTCTGATTCTTCACGGCTGCTGCTCTCTTCCCATCTCATCTCACATTTCCCAGGGCCACGAAAGAACTGGGTTGTACTGAAGTCCAAGCAGAGCCACCTACCTTCTCTTGCTTCTCTCATCTCTTGCCACAATTATTGGACCGGAAATTCATGAAGATCCTCTGCCGGTGCTAGAACATGGCAGTCTGGGTATGGCCTGAGCAGTAAAGATTTGTTCATCTTTGTTTATTGGGATTTCTTCTTTGTCACCTTCATCCCTTTAGACTCTCCCCTTTAGACCTCTAGTGTTGCTGCTGTGCTTGTGTATCCATGGCGGCAATGGCCTCTTCTCCCCCTACAACACCAAATCTCGGTTCGCAGCCTACATGGGTGCCCTATGAGCCAACCAGGGATTGCTCCCAGGGCCTCTGCAGCATGTACTGCCCGCAGTGGTGCTACTTCATCTTCCCGCCACCGCCGCCGGCCTTCGACATCACCGGCTCCAGCTCCGACGACTCCTCCGGCCCAACCTTCTCGCCGCTCGTCATCGCCATCATCGGGGTGCTCGCGAGCGCCTTCCTCCTCGTCAGCTACTACACCATCATATCCAAGTACTGCGGCACCTTCAGCTCCCTCCGGAACAGACTCCTTGGCTCCAGCGCTCACCGCGGCAGCGGCGGCGGCGCCGACGGCGGAGACAATTCCAGGAGCCAGGAGCCGTGGAGCGTCGCGCTGTCGGACGGGATGGACGAGACGCTGATCAACAAGATCACAGTGTGCAAGTACAGGCGCGGCGACGGCTTCGTGGACAGCACGGACTGCTCCGTCTGCCTCGGCGAGTTCCGCGAAGGCGAGAGCCTCCGGCTGCTGCCCAAGTGCAGCCACGCCTTCCACGTCCCGTGCATCGACACCTGGCTCAAGTCCCACTCCAACTGCCCGCTCTGCCGCTGCAACATCGCGTTCGTCACCGTCGGGATGGTCTCGCCGGAGCCGGAGGCCCGCGTTCCACGGGAGGATAGGAGAGACAACCACGAGCTGGTCCTGACAATTGACAACCCGGAGCATGTGCGCGAGGAGCCACAGAACGTGGTGACCGGTGTCGCCGTCGGCAACGGCGGCCGCAACCACGAGGCGAAGGATGGTCCGGGGAGGTCGGAAGATGCAAATGGCACAGCTGAGATCAGAGAAGACGGCGCCTTGATGCCGCCCACAAGGGCGCCGTCGTCGTTGTCAGACACGCACCGTGAAGGCCGGATGTCCATTGCCGATGTCCTGCAGGCGAGCCTGGAAGACGAGCTGATGGTGGCCAGGGAGAGCGGCCTCCTGGCAGGCTCTTCGGGGTCCTCAAGACGGTGTCACGGGGAGCACAGCAAGGACGGCGGCGGCCGCAGTGGCCGGGCATTGCCGGACGGCGCGAATATGAAGAGATTGGCGCCGGCCGGGAGATCATGCTTCAGCAGCAGGAGTGGCAGAGGAAAGGACTCCGTTCTTCCAATGTGAGGCAACCAAGGTGGTTCTTTTGACAGGGAAACATGACAAGAAACTTTTGTGTGTTCTTCCGGTGGAGATCAAATGATCAATGTGCCGGCTGCATCTGCGATGCGCGTATGGGGATTTCATCCTGTTTTGATCACTTCCCGTGATGCCCACATGCTGAAGAAATCCTTCTCCTGCAATGCATGGTGAGTGGTGAGATCTCCTACATGTTTCTACTAGATAACTGTATAGGGTTTGAGAAGTTTTCCTTTTTCTTTCTTTCTTCCATGTTGCCACCCCTCTCTATACAATTGGGATCTGCTCCAGAGCAGCCTCTCTGGATTAGTGAGTTAGGCATTACTAGATCAAAGACTCTCCAAGTGAGAAGTGTGACACTTTCAGTTCTTTTTCCACCTCCATTTTTGTGTGCTTTTGCGTCTACCATTTTATCTTCCTAGGTGTCATTGTGGCACAATTTGGGGATTGAATGAGAACCGTGGCCAATTCAGCTTGATCCATGCCCAGATCTCATCTCAGGCTCTTCAGATGTTTGCACAGTTTAGGTGACCAGTGACATCCTACTCAGAATGCCAGCTGTATAGACATTGGTAACACATCCCAATCATACAGGTTTCTATTACGTACAACAATTTGAGTGCCCGCCCTGGTCTTCAAATAACATGCGTTTTTCATATGTCAGACTGCAGTTGTGGTTTTCAAATAACATGCGTTTTTCATATGTCAGACTGCAGTTTGGTTAGGTTGAAGCAGTACTAGCTAGATGAGCAACTGTCTATCCATGAAACGTATACTCAACCCAGTGATCTCATTAGTCACAGGGCTCACAGGGCTTCTGATGGTTTTTCTGT]

[-] EMBL CA764830             [ATTAGTTTACATTTAANGCTTCCAAATGGTGTGTNCGGTATACTTCAAAAANCTTTACACCCAAAGAANCTAAACACACCCTTTGGTTGGCTGAGTTTCTTCGGNCGATCTTAAGCAATTTCCAAAAATGGTCTTATTCCCCTTCACTGTTTAGTCTTGGGATTTTGGAACACAGTCACTGCATTTTTTGTACCAGCATCACTCCATATTTTTATTTACTTTATCCCAGCCAAACATCCACTTTATTTTCTTATATTCCAAAGGGGACAAACGAGGCAAAGNAAAAGAAATAACAGCGCCGGCAGAGGGAAATGAAAAGAAAAGGGGTAGTGGACGAGAGAGCAGGAGCAGTGGTGGCAATGGCACCAAAGGCAAAGAAGGCCCCAATTCCCAACCACCGCCACCTCCCTCCTCCTCATCAAGCATTCAGGCTCTCCTATCCCAAAATGCTTTGCTTTCCAAGCAAGCACACTCCCTCTCTGCTTTGGAGATTAGCTCTCGTTTCTCTTAGTAGCAGCAGCTGGTGTGGCAGCATCTCATCTCATGATCTCTGATTCTTCACGGCTGCTGCTCTCTTCCCATCTCATCTCACATTTCCCAGGGCCACGAAAGAACTGGGTTGTACTGAAGTCCAAGCAGAGCCACCTACCTTCTCTTGCTTCTCTCATCTCTTGCCACAATTATTGGACCGGAAATTCATGAAGATCCTCTGCCGGTGCTAGAACATGGCAGTCTGGGTATGGCCTGAGCAGTAAAGATTTGTTCATCTTTGTTTATTGGGATTTCTTCTTTGTCACCTTCATCCCTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AK070774             [                                                                                                                                                                                                                                                                                                                                                                                                                    CTCCCTCCTCCTCATCAAGCATTCAGGCTCTCCTATCCCAAAATGCTTTGCTTTCCAAGCAAGCACACTCCCTCTCTGCTTTGGAGATTAGCTCTCGTTTCTCTTAGTAGCAGCAGCTGGTGTGGCAGCATCTCATCTCATGATCTCTGATTCTTCACGGCTGCTGCTCTCTTCCCATCTCATCTCACATTTCCCAGGGCCACGAAGGAACTGGGTTGTACTGAAGTCCAAGCAGAGCCACCTACCTTCTCTTGCTTCTCTCATCTCTTGCCACAATTATTGGACCGGAAATTCATGAAGATCCTCTGCCGGTGCTAGAACATGGCAGTCTGGGTATGGCCTGAGCAGTAAAGATTTGTTCATCTTTGTTTATTGGGATTTCTTCTTTGTCACCTTCATCCCTTTAGACTCTCCCCTTTAGACCTCTAGTGTTGCTGCTGTGCTTGTGTATCCATGGCGGCAATGGCCTCTTCTCCCCCTACAACACCAAATCTCGGTTCGCAGCCTACATGGGTGCCCTATGAGCCAACCAGGGATTGCTCCCAGGGCCTCTGCAGCATGTACTGCCCGCAGTGGTGCTACTTCATCTTCCCGCCACCGCCGCCGGCCTTCGACATCACCGGCTCCAGCTCCGACGACTCCTCCGGCCCAACCTTCTCGCCGCTCGTCATCGCCATCATCGGGGTGCTCGCGAGCGCCTTCCTCCTCGTCAGCTACTACACCATCATATCCAAGTACTGCGGCACCTTCAGCTCCCTCCGGAACAGACTCCTTGGCTCCAGCGCTCACCGCGGCAGCGGCGGCGGCGCCGACGGCGGAGACAATTCCAGGAGCCAGGAGCCGTGGAGCGTCGCGCTGTCGGACGGGATGGACGAGACGCTGATCAACAAGATCACAGTGTGCAAGTACAGGCGCGGCGACGGCTTCGTGGACAGCACGGACTGCTCCGTCTGCCTCGGCGAGTTCCGCGAAGGCGAGAGCCTCCGGCTGCTGCCCAAGTGCAGCCACGCCTTCCACGTCCCGTGCATCGACACCTGGCTCAAGTCCCACTCCAACTGCCCGCTCTGCCGCTGCAACATCGCGTTCGTCACCGTCGGGATGGTCTCGCCGGAGCCGGAGGCCCGCGTTCCACGGGAGGATAGGAGAGACAACCACGAGCTGGTCCTGACAATTGACAACCCGGAGCATGTGCGCGAGGAGCCACAGAACGTGGTGACCGGTGTCGCCGTCGGCAACGGCGGCCGCAACCACGAGGCGAAGGATGGTCCGGGGAGGTCGGAAGATGCAAATGGCACAGCTGAGATCAGAGAAGACGGCGCCTTGATGCCGCCCACAAGGGCGCCGTCGTCGTTGTCAGACACGCACCGTGAAGGCCGGATGTCCATTGCCGATGTCCTGCAGGCGAGCCTGGAAGACGAGCTGATGGTGGCCAGGGAGAGCGGCCTCCTGGCAGGCTCTTCGGGGTCCTCAAGACGGTGTCACGGGGAGCACAGCAAGGACGGCGGCGGCCGCAGTGGCCGGGCATTGCCGGACGGCGCGAATATGAAGAGATTGGCGCCGGCCGGGAGATCATGCTTCAGCAGCAGGAGTGGCAGAGGAAAGGACTCCGTTCTTCCAATGTGAGGCAACCAAGGTGGTTCTTTTGACAGGGAAACATGACAAGAAACTTTTGTGTGTTCTTCCGGTGGAGATCAAATGATCAATGTGCCGGCTGCATCTGCGATGCGCGTATGGGGATTTCATCCTGTTTTGATCACTTCCCGTGATGCCCACATGCTGAAGAAATCCTTCTCCTGCAATGCATGGTGAGTGGTGAGATCTCCTACATGTTTCTACTAGATAACTGTATAGGGTTTGAGAAGTTTTCCTTTTTCTTTCTTTCTTCCATGTTGCCACCCCTCTCTATACAATTGGGATCTGCTCCAGAGCAGCCTCTCTGGATTAGTGAGTTAGGCATTACTAGATCAAAGACTCTCCAAGTGAGAAGTGTGACACTTTCAGTTCTTTTTCCACCTCCATTTTTGTGTGCTTTTGCGTCTACCATTTTATCTTCCTAGGTGTCATTGTGGCACAATTTGGGGATTGAATGAGAACCGTGGCCA                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CA765033             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GCCGGCTGCATCTGCGCTGCGCGTATGGGGATTTCATCCTGTTTTGATCACTTCCCGTGATGCCCACATGCTGAAGAAATCCTTCTCCTGCAATGCATGGTGAGTGGTGAGATCTCCTACATGTTTCTACTAGATAACTGTATAGGGTTTGAGAAGTTTTCCTTTTTCTTTCTTTCTTCCATGTTGCCACCCCTCTCTATACAATTGGGATCTGCTCCAGAGCAGCCTCTCTGGATTAGTGAGTTAGGCATTACTAGATCAAAGACTCTCCAAGTGAGAAGTGTGACACTTTCAGTTCTTTTTCCACCTCCATTTTTGTGTGCTTTTGCGTCTACCATTTTATCTTCCTAGGTGTCATTGTGGCACAATTTGGGGATTGAATGAGAACCGTGGCCAATTCAGCTTGATCCATGCCCAGATCTCATCTCAGGCTCTTCAGATGTTTGCACAGTTTAGGTGACCAGTGACATCCTACTCAGAATGCCAGCTGTATAGACATTGGTAACACATCCCAATCATACAGGTTTCTATTACGTACAACAATTTGAGTGCCCGCCCTGGTCTTCAAATAACATGCGTTTTTCATATGTCAGACTGCAGTTGTGGTTTTCAAATAACATGCGTTTTTCATATGTCAGACTGCAGTTTGGTTAGGTTGAAGCAGTACTAGCTAGATGAGCAACTGTCTATCCATGAAACGTATACTCAACCCAGTGATCTCATTAGTCACAGGGCTCACAGGGCTTCTGATGGTTTTTCTGT]


>consensus_7878#0 ATTAGTTTACATTTAANGCTTCCAAATGGTGTGTNCGGTATACTTCAAAAANCTTTACAC CCAAAGAANCTAAACACACCCTTTGGTTGGCTGAGTTTCTTCGGNCGATCTTAAGCAATT TCCAAAAATGGTCTTATTCCCCTTCACTGTTTAGTCTTGGGATTTTGGAACACAGTCACT GCATTTTTTGTACCAGCATCACTCCATATTTTTATTTACTTTATCCCAGCCAAACATCCA CTTTATTTTCTTATATTCCAAAGGGGACAAACGAGGCAAAGNAAAAGAAATAACAGCGCC GGCAGAGGGAAATGAAAAGAAAAGGGGTAGTGGACGAGAGAGCAGGAGCAGTGGTGGCAA TGGCACCAAAGGCAAAGAAGGCCCCAATTCCCAACCACCGCCACCTCCCTCCTCCTCATC AAGCATTCAGGCTCTCCTATCCCAAAATGCTTTGCTTTCCAAGCAAGCACACTCCCTCTC TGCTTTGGAGATTAGCTCTCGTTTCTCTTAGTAGCAGCAGCTGGTGTGGCAGCATCTCAT CTCATGATCTCTGATTCTTCACGGCTGCTGCTCTCTTCCCATCTCATCTCACATTTCCCA GGGCCACGAAAGAACTGGGTTGTACTGAAGTCCAAGCAGAGCCACCTACCTTCTCTTGCT TCTCTCATCTCTTGCCACAATTATTGGACCGGAAATTCATGAAGATCCTCTGCCGGTGCT AGAACATGGCAGTCTGGGTATGGCCTGAGCAGTAAAGATTTGTTCATCTTTGTTTATTGG GATTTCTTCTTTGTCACCTTCATCCCTTTAGACTCTCCCCTTTAGACCTCTAGTGTTGCT GCTGTGCTTGTGTATCCATGGCGGCAATGGCCTCTTCTCCCCCTACAACACCAAATCTCG GTTCGCAGCCTACATGGGTGCCCTATGAGCCAACCAGGGATTGCTCCCAGGGCCTCTGCA GCATGTACTGCCCGCAGTGGTGCTACTTCATCTTCCCGCCACCGCCGCCGGCCTTCGACA TCACCGGCTCCAGCTCCGACGACTCCTCCGGCCCAACCTTCTCGCCGCTCGTCATCGCCA TCATCGGGGTGCTCGCGAGCGCCTTCCTCCTCGTCAGCTACTACACCATCATATCCAAGT ACTGCGGCACCTTCAGCTCCCTCCGGAACAGACTCCTTGGCTCCAGCGCTCACCGCGGCA GCGGCGGCGGCGCCGACGGCGGAGACAATTCCAGGAGCCAGGAGCCGTGGAGCGTCGCGC TGTCGGACGGGATGGACGAGACGCTGATCAACAAGATCACAGTGTGCAAGTACAGGCGCG GCGACGGCTTCGTGGACAGCACGGACTGCTCCGTCTGCCTCGGCGAGTTCCGCGAAGGCG AGAGCCTCCGGCTGCTGCCCAAGTGCAGCCACGCCTTCCACGTCCCGTGCATCGACACCT GGCTCAAGTCCCACTCCAACTGCCCGCTCTGCCGCTGCAACATCGCGTTCGTCACCGTCG GGATGGTCTCGCCGGAGCCGGAGGCCCGCGTTCCACGGGAGGATAGGAGAGACAACCACG AGCTGGTCCTGACAATTGACAACCCGGAGCATGTGCGCGAGGAGCCACAGAACGTGGTGA CCGGTGTCGCCGTCGGCAACGGCGGCCGCAACCACGAGGCGAAGGATGGTCCGGGGAGGT CGGAAGATGCAAATGGCACAGCTGAGATCAGAGAAGACGGCGCCTTGATGCCGCCCACAA GGGCGCCGTCGTCGTTGTCAGACACGCACCGTGAAGGCCGGATGTCCATTGCCGATGTCC TGCAGGCGAGCCTGGAAGACGAGCTGATGGTGGCCAGGGAGAGCGGCCTCCTGGCAGGCT CTTCGGGGTCCTCAAGACGGTGTCACGGGGAGCACAGCAAGGACGGCGGCGGCCGCAGTG GCCGGGCATTGCCGGACGGCGCGAATATGAAGAGATTGGCGCCGGCCGGGAGATCATGCT TCAGCAGCAGGAGTGGCAGAGGAAAGGACTCCGTTCTTCCAATGTGAGGCAACCAAGGTG GTTCTTTTGACAGGGAAACATGACAAGAAACTTTTGTGTGTTCTTCCGGTGGAGATCAAA TGATCAATGTGCCGGCTGCATCTGCGATGCGCGTATGGGGATTTCATCCTGTTTTGATCA CTTCCCGTGATGCCCACATGCTGAAGAAATCCTTCTCCTGCAATGCATGGTGAGTGGTGA GATCTCCTACATGTTTCTACTAGATAACTGTATAGGGTTTGAGAAGTTTTCCTTTTTCTT TCTTTCTTCCATGTTGCCACCCCTCTCTATACAATTGGGATCTGCTCCAGAGCAGCCTCT CTGGATTAGTGAGTTAGGCATTACTAGATCAAAGACTCTCCAAGTGAGAAGTGTGACACT TTCAGTTCTTTTTCCACCTCCATTTTTGTGTGCTTTTGCGTCTACCATTTTATCTTCCTA GGTGTCATTGTGGCACAATTTGGGGATTGAATGAGAACCGTGGCCAATTCAGCTTGATCC ATGCCCAGATCTCATCTCAGGCTCTTCAGATGTTTGCACAGTTTAGGTGACCAGTGACAT CCTACTCAGAATGCCAGCTGTATAGACATTGGTAACACATCCCAATCATACAGGTTTCTA TTACGTACAACAATTTGAGTGCCCGCCCTGGTCTTCAAATAACATGCGTTTTTCATATGT CAGACTGCAGTTGTGGTTTTCAAATAACATGCGTTTTTCATATGTCAGACTGCAGTTTGG TTAGGTTGAAGCAGTACTAGCTAGATGAGCAACTGTCTATCCATGAAACGTATACTCAAC CCAGTGATCTCATTAGTCACAGGGCTCACAGGGCTTCTGATGGTTTTTCTGT



consensusID : consensus_7878#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 553
fasta sequence
                              [GAATAAGNCTTGGNGCCGCAGTGGCCGGGCATTGCCGGACGGCGCGAATATGAAGAGATTGGCGCCGGCCGGGAGATCATGCTTCAGCAGCAGGAGTGGCAGAGGAAAGGACTCCGTTCTTCCAATGTGAGGCAACCAAGGTGGTTCTTTTGACAGGGAAACATGACAAGAAACTTTTGTGTGTTCTTCCGGTGGAGATCAAATGATCAATGTGCCGGCTGCATCTGCGATGCGCGTATGGGGATTTCATCCTGTTTTGATCACTTCCCGTGATGCCCACATGCTGAAGAAATCCTTCTCCTGCAATGCATGGTGAGTGGTGAGATCTCCTACATGTTTCTACTAGATAACTGTATAGGGTTTGAGAAGTTTTCCTTTTTCTTTCTTTCTTCCATGTTGCCACCCCTCTCTATACAATTGGGATCTGCTCCAGAGCAGCCTCTCTGGATTAGTGAGTTAGGCATTACTAGATCAAAGACTCTCCAAGTGAGAAGTGTGACACTTTCAGTTCTTTTTCCACCTCCAAAAAAAAAAAAAAAAAACAGAGCGGCCG]

[+] EMBL BI305912             [GAATAAGNCTTGGNGCCGCAGTGGCCGGGCATTGCCGGACGGCGCGAATATGAAGAGATTGGCGCCGGCCGGGAGATCATGCTTCAGCAGCAGGAGTGGCAGAGGAAAGGACTCCGTTCTTCCAATGTGAGGCAACCAAGGTGGTTCTTTTGACAGGGAAACATGACAAGAAACTTTTGTGTGTTCTTCCGGTGGAGATCAAATGATCAATGTGCCGGCTGCATCTGCGATGCGCGTATGGGGATTTCATCCTGTTTTGATCACTTCCCGTGATGCCCACATGCTGAAGAAATCCTTCTCCTGCAATGCATGGTGAGTGGTGAGATCTCCTACATGTTTCTACTAGATAACTGTATAGGGTTTGAGAAGTTTTCCTTTTTCTTTCTTTCTTCCATGTTGCCACCCCTCTCTATACAATTGGGATCTGCTCCAGAGCAGCCTCTCTGGATTAGTGAGTTAGGCATTACTAGATCAAAGACTCTCCAAGTGAGAAGTGTGACACTTTCAGTTCTTTTTCCACCTCCAAAAAAAAAAAAAAAAAACAGAGCGGCCG]
[+] EMBL OSR22161A            [                                                                                                                                                                                                                                 TGCGATGCGCGTATGGGGATTTCATCCTGTTTTGATCACTTCCCGTGATGCCCACATGCTGAAGAAATCCTTCTCCTGCAATGCATGGTGAGTGGTGAGATCTCCTACATGTTTCTACTAGATAACTGTATAGGGTTTGAGAAGTTTTCCTTTTTCTTTCTTTCTTCCATGTTGCCACCCCTCTCTATACAATTGGGATCTGCTCCAGAGCAGCCTCTCTGGATTAGTGAGTTAGGCATTACTAGATCAAAGACTCTCCAAGTGAGAAGTGTGACACTTTCAGTTCTTTTTCCACCTCCAAA                          ]


>consensus_7878#1 GAATAAGNCTTGGNGCCGCAGTGGCCGGGCATTGCCGGACGGCGCGAATATGAAGAGATT GGCGCCGGCCGGGAGATCATGCTTCAGCAGCAGGAGTGGCAGAGGAAAGGACTCCGTTCT TCCAATGTGAGGCAACCAAGGTGGTTCTTTTGACAGGGAAACATGACAAGAAACTTTTGT GTGTTCTTCCGGTGGAGATCAAATGATCAATGTGCCGGCTGCATCTGCGATGCGCGTATG GGGATTTCATCCTGTTTTGATCACTTCCCGTGATGCCCACATGCTGAAGAAATCCTTCTC CTGCAATGCATGGTGAGTGGTGAGATCTCCTACATGTTTCTACTAGATAACTGTATAGGG TTTGAGAAGTTTTCCTTTTTCTTTCTTTCTTCCATGTTGCCACCCCTCTCTATACAATTG GGATCTGCTCCAGAGCAGCCTCTCTGGATTAGTGAGTTAGGCATTACTAGATCAAAGACT CTCCAAGTGAGAAGTGTGACACTTTCAGTTCTTTTTCCACCTCCAAAAAAAAAAAAAAAA AACAGAGCGGCCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7878#0      ATTAGTTTACATTTAANGCTTCCAAATGGTGTGTNCGGTATACTTCAAAAANCTTTACAC 60
consensus_7878#1      ------------------------------------------------------------
                                                                                  

consensus_7878#0      CCAAAGAANCTAAACACACCCTTTGGTTGGCTGAGTTTCTTCGGNCGATCTTAAGCAATT 120
consensus_7878#1      ------------------------------------------------------------
                                                                                  

consensus_7878#0      TCCAAAAATGGTCTTATTCCCCTTCACTGTTTAGTCTTGGGATTTTGGAACACAGTCACT 180
consensus_7878#1      ------------------------------------------------------------
                                                                                  

consensus_7878#0      GCATTTTTTGTACCAGCATCACTCCATATTTTTATTTACTTTATCCCAGCCAAACATCCA 240
consensus_7878#1      ------------------------------------------------------------
                                                                                  

consensus_7878#0      CTTTATTTTCTTATATTCCAAAGGGGACAAACGAGGCAAAGNAAAAGAAATAACAGCGCC 300
consensus_7878#1      ------------------------------------------------------------
                                                                                  

consensus_7878#0      GGCAGAGGGAAATGAAAAGAAAAGGGGTAGTGGACGAGAGAGCAGGAGCAGTGGTGGCAA 360
consensus_7878#1      ------------------------------------------------------------
                                                                                  

consensus_7878#0      TGGCACCAAAGGCAAAGAAGGCCCCAATTCCCAACCACCGCCACCTCCCTCCTCCTCATC 420
consensus_7878#1      ------------------------------------------------------------
                                                                                  

consensus_7878#0      AAGCATTCAGGCTCTCCTATCCCAAAATGCTTTGCTTTCCAAGCAAGCACACTCCCTCTC 480
consensus_7878#1      ------------------------------------------------------------
                                                                                  

consensus_7878#0      TGCTTTGGAGATTAGCTCTCGTTTCTCTTAGTAGCAGCAGCTGGTGTGGCAGCATCTCAT 540
consensus_7878#1      ------------------------------------------------------------
                                                                                  

consensus_7878#0      CTCATGATCTCTGATTCTTCACGGCTGCTGCTCTCTTCCCATCTCATCTCACATTTCCCA 600
consensus_7878#1      ------------------------------------------------------------
                                                                                  

consensus_7878#0      GGGCCACGAAAGAACTGGGTTGTACTGAAGTCCAAGCAGAGCCACCTACCTTCTCTTGCT 660
consensus_7878#1      ------------------------------------------------------------
                                                                                  

consensus_7878#0      TCTCTCATCTCTTGCCACAATTATTGGACCGGAAATTCATGAAGATCCTCTGCCGGTGCT 720
consensus_7878#1      ------------------------------------------------------------
                                                                                  

consensus_7878#0      AGAACATGGCAGTCTGGGTATGGCCTGAGCAGTAAAGATTTGTTCATCTTTGTTTATTGG 780
consensus_7878#1      ------------------------------------------------------------
                                                                                  

consensus_7878#0      GATTTCTTCTTTGTCACCTTCATCCCTTTAGACTCTCCCCTTTAGACCTCTAGTGTTGCT 840
consensus_7878#1      ------------------------------------------------------------
                                                                                  

consensus_7878#0      GCTGTGCTTGTGTATCCATGGCGGCAATGGCCTCTTCTCCCCCTACAACACCAAATCTCG 900
consensus_7878#1      ------------------------------------------------------------
                                                                                  

consensus_7878#0      GTTCGCAGCCTACATGGGTGCCCTATGAGCCAACCAGGGATTGCTCCCAGGGCCTCTGCA 960
consensus_7878#1      ------------------------------------------------------------
                                                                                  

consensus_7878#0      GCATGTACTGCCCGCAGTGGTGCTACTTCATCTTCCCGCCACCGCCGCCGGCCTTCGACA 1020
consensus_7878#1      ------------------------------------------------------------
                                                                                  

consensus_7878#0      TCACCGGCTCCAGCTCCGACGACTCCTCCGGCCCAACCTTCTCGCCGCTCGTCATCGCCA 1080
consensus_7878#1      ------------------------------------------------------------
                                                                                  

consensus_7878#0      TCATCGGGGTGCTCGCGAGCGCCTTCCTCCTCGTCAGCTACTACACCATCATATCCAAGT 1140
consensus_7878#1      ------------------------------------------------------------
                                                                                  

consensus_7878#0      ACTGCGGCACCTTCAGCTCCCTCCGGAACAGACTCCTTGGCTCCAGCGCTCACCGCGGCA 1200
consensus_7878#1      ------------------------------------------------------------
                                                                                  

consensus_7878#0      GCGGCGGCGGCGCCGACGGCGGAGACAATTCCAGGAGCCAGGAGCCGTGGAGCGTCGCGC 1260
consensus_7878#1      ------------------------------------------------------------
                                                                                  

consensus_7878#0      TGTCGGACGGGATGGACGAGACGCTGATCAACAAGATCACAGTGTGCAAGTACAGGCGCG 1320
consensus_7878#1      ------------------------------------------------------------
                                                                                  

consensus_7878#0      GCGACGGCTTCGTGGACAGCACGGACTGCTCCGTCTGCCTCGGCGAGTTCCGCGAAGGCG 1380
consensus_7878#1      ------------------------------------------------------------
                                                                                  

consensus_7878#0      AGAGCCTCCGGCTGCTGCCCAAGTGCAGCCACGCCTTCCACGTCCCGTGCATCGACACCT 1440
consensus_7878#1      ------------------------------------------------------------
                                                                                  

consensus_7878#0      GGCTCAAGTCCCACTCCAACTGCCCGCTCTGCCGCTGCAACATCGCGTTCGTCACCGTCG 1500
consensus_7878#1      ------------------------------------------------------------
                                                                                  

consensus_7878#0      GGATGGTCTCGCCGGAGCCGGAGGCCCGCGTTCCACGGGAGGATAGGAGAGACAACCACG 1560
consensus_7878#1      ------------------------------------------------------------
                                                                                  

consensus_7878#0      AGCTGGTCCTGACAATTGACAACCCGGAGCATGTGCGCGAGGAGCCACAGAACGTGGTGA 1620
consensus_7878#1      ------------------------------------------------------------
                                                                                  

consensus_7878#0      CCGGTGTCGCCGTCGGCAACGGCGGCCGCAACCACGAGGCGAAGGATGGTCCGGGGAGGT 1680
consensus_7878#1      ------------------------------------------------------------
                                                                                  

consensus_7878#0      CGGAAGATGCAAATGGCACAGCTGAGATCAGAGAAGACGGCGCCTTGATGCCGCCCACAA 1740
consensus_7878#1      ------------------------------------------------------------
                                                                                  

consensus_7878#0      GGGCGCCGTCGTCGTTGTCAGACACGCACCGTGAAGGCCGGATGTCCATTGCCGATGTCC 1800
consensus_7878#1      ------------------------------------------------------------
                                                                                  

consensus_7878#0      TGCAGGCGAGCCTGGAAGACGAGCTGATGGTGGCCAGGGAGAGCGGCCTCCTGGCAGGCT 1860
consensus_7878#1      ------------------------------------------------------------
                                                                                  

consensus_7878#0      CTTCGGGGTCCTCAAGACGGTGTCACGGGGAGCACAGCAAGGACGGCGGCGGCCGCAGTG 1920
consensus_7878#1      -------------------------------------GAATAAGNCTTGGNGCCGCAGTG 23
                                                            **  *     *  *********

consensus_7878#0      GCCGGGCATTGCCGGACGGCGCGAATATGAAGAGATTGGCGCCGGCCGGGAGATCATGCT 1980
consensus_7878#1      GCCGGGCATTGCCGGACGGCGCGAATATGAAGAGATTGGCGCCGGCCGGGAGATCATGCT 83
                      ************************************************************

consensus_7878#0      TCAGCAGCAGGAGTGGCAGAGGAAAGGACTCCGTTCTTCCAATGTGAGGCAACCAAGGTG 2040
consensus_7878#1      TCAGCAGCAGGAGTGGCAGAGGAAAGGACTCCGTTCTTCCAATGTGAGGCAACCAAGGTG 143
                      ************************************************************

consensus_7878#0      GTTCTTTTGACAGGGAAACATGACAAGAAACTTTTGTGTGTTCTTCCGGTGGAGATCAAA 2100
consensus_7878#1      GTTCTTTTGACAGGGAAACATGACAAGAAACTTTTGTGTGTTCTTCCGGTGGAGATCAAA 203
                      ************************************************************

consensus_7878#0      TGATCAATGTGCCGGCTGCATCTGCGATGCGCGTATGGGGATTTCATCCTGTTTTGATCA 2160
consensus_7878#1      TGATCAATGTGCCGGCTGCATCTGCGATGCGCGTATGGGGATTTCATCCTGTTTTGATCA 263
                      ************************************************************

consensus_7878#0      CTTCCCGTGATGCCCACATGCTGAAGAAATCCTTCTCCTGCAATGCATGGTGAGTGGTGA 2220
consensus_7878#1      CTTCCCGTGATGCCCACATGCTGAAGAAATCCTTCTCCTGCAATGCATGGTGAGTGGTGA 323
                      ************************************************************

consensus_7878#0      GATCTCCTACATGTTTCTACTAGATAACTGTATAGGGTTTGAGAAGTTTTCCTTTTTCTT 2280
consensus_7878#1      GATCTCCTACATGTTTCTACTAGATAACTGTATAGGGTTTGAGAAGTTTTCCTTTTTCTT 383
                      ************************************************************

consensus_7878#0      TCTTTCTTCCATGTTGCCACCCCTCTCTATACAATTGGGATCTGCTCCAGAGCAGCCTCT 2340
consensus_7878#1      TCTTTCTTCCATGTTGCCACCCCTCTCTATACAATTGGGATCTGCTCCAGAGCAGCCTCT 443
                      ************************************************************

consensus_7878#0      CTGGATTAGTGAGTTAGGCATTACTAGATCAAAGACTCTCCAAGTGAGAAGTGTGACACT 2400
consensus_7878#1      CTGGATTAGTGAGTTAGGCATTACTAGATCAAAGACTCTCCAAGTGAGAAGTGTGACACT 503
                      ************************************************************

consensus_7878#0      TTCAGTTCTTTTTCCACCTCCATTTTTGTGTGCTTTTGCGTCTACCATTTTATCTTCCTA 2460
consensus_7878#1      TTCAGTTCTTTTTCCACCTCCAAAAAAAAAAAAAAAAAACAGAGCGGCCG---------- 553
                      **********************                      *               

consensus_7878#0      GGTGTCATTGTGGCACAATTTGGGGATTGAATGAGAACCGTGGCCAATTCAGCTTGATCC 2520
consensus_7878#1      ------------------------------------------------------------
                                                                                  

consensus_7878#0      ATGCCCAGATCTCATCTCAGGCTCTTCAGATGTTTGCACAGTTTAGGTGACCAGTGACAT 2580
consensus_7878#1      ------------------------------------------------------------
                                                                                  

consensus_7878#0      CCTACTCAGAATGCCAGCTGTATAGACATTGGTAACACATCCCAATCATACAGGTTTCTA 2640
consensus_7878#1      ------------------------------------------------------------
                                                                                  

consensus_7878#0      TTACGTACAACAATTTGAGTGCCCGCCCTGGTCTTCAAATAACATGCGTTTTTCATATGT 2700
consensus_7878#1      ------------------------------------------------------------
                                                                                  

consensus_7878#0      CAGACTGCAGTTGTGGTTTTCAAATAACATGCGTTTTTCATATGTCAGACTGCAGTTTGG 2760
consensus_7878#1      ------------------------------------------------------------
                                                                                  

consensus_7878#0      TTAGGTTGAAGCAGTACTAGCTAGATGAGCAACTGTCTATCCATGAAACGTATACTCAAC 2820
consensus_7878#1      ------------------------------------------------------------
                                                                                  

consensus_7878#0      CCAGTGATCTCATTAGTCACAGGGCTCACAGGGCTTCTGATGGTTTTTCTGT 2872
consensus_7878#1      ----------------------------------------------------
                                                                          




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)