cluster # 7879

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Oryza sativa
cluster # 7879 cluster # 7879 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7879#0 length = 664 sequences # 4

consensus_7879#1 length = 558 sequences # 1

consensusID : consensus_7879#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 664
fasta sequence

                              [TTTTTAACAAATGTGCCAAGATTGATCTTTCTATATGTCGGATAAAAGAAGATACATTGTACTTCATGCTTATACAGAACAATAACGTCAAACATCCGCGATCAGTCCAAATCCACAATCCCAAAATTGGAGAGAAGGATCTTCACTTG-TTGAACAAAATCCGAGCCGGTTGCGTACTCTGTTAGCATCCCTACTGCAAACCCAAACATAGCCCATCTTCCATTGGAAATCTCATTCTTGCCCAAGAACCCAAAGAAGGGACCCTGGTCAGCCTCGTCCAGCTTCTTCTGCTTGAAGTAATCCTGCAGATCCTTGGCCACCTTCCTCTGGTTCTCCAACGTCACGGCCCCCGCCGCCGC-GG-GCGCCGCCACAGCCACCGGCGCCGCGGCCTGCTTCGGCTCAGGATCCTGCGACGGCGGCGGCGACGACGAAGGCGCAGCCGGCTTCACCGGGGTGGGCGGCTGGGACAGCGTCGGAGGTGTGGACAGAGTCGGCGTCTTGGGCGGCGGCGACAGCGGCGGCGCGGCGGGTCTCCTGGGCGCCCCCTCCGCCTTGGAGCTCCTGATCACGGCGAACGACGACCGGCATGCCCGGTGGCGAGGAGGCGAGACCGCGACGGCCGCGACGCCTCCCACCTTCACCTTGATGGAAGGGATGGAGGGAG]

[-] EMBL BI811100             [TTTTTAACAAATGTGCCAAGATTGATCTTTCTATATGTCGGATAAAAGAAGATACA TGTACTTCATGCTTATACAGAACAATAACGTC AACATCCGCGATCAGTCCAAATCCACAATCCCCAAATTGGGGAGAAGGATCTTCACTTGTTTGAACAAAATCCGAGCCGGTTG GTACTCTGTTAGCATCCCTACTG AAACCCAAACATAG CCATCTTCCA TGGAAATCTCATTCTTGGCCAAGAACCCAAAGAAGGGACCCTGGTCAGCCTCGTCCAGCTTCTTCTTGTTGAAGTAATCCTG AGATCCTTGGCCACCTTCCTCTGGTTCTCCAACGTCACGG CCCCGCCGCCGCTGGTGCGCCG CACAG CACCGGTGCCGCGG CTGCTTCGGCTCAGGATCCTGCGACGGCGGCGGCGACGACGAA GCGCAG CGG TTCACCGGGGTGGGCGGCTGGGACAGCGTCGGAGGTGTGGACAGAGTCGG GTCTTGGGCGG                                                                                                                                                              ]
[+] EMBL CB679798             [                CAAGATTGATCTTTCTATATGTCGGATAAAAGAAGATACATTGTACTTCATGCTTATACAGAACAATAACGTCAAACATCCGCGATCAGTCCAAATCCACAATCCCAAAATTGGAGAGAAGGATCTTCACTTG TTGAACAAAATCCGAGCCGGTTGCGTACTCTGTTAGCATCCCTACTGCAAACCCAAACATAGCCCATCTTCCATTGGAAATCTCATTCTTGCCCAAGAACCCAAAGAAGGGACCCTGGTCAGCCTCGTCCAGCTTCTTCTGCTTGAAGTAATCCTGCAGATCCTTGGCCACCTTCCTCTGGTACTCCAACGTCACGGCCCCCGCCGCCGC GG GCGCCGCCACAGCCACCGGCGCCGCGGCCTGCTTCGGCTCAGGATCCTGCGACGGCGGCGGCGACGACGAAGGCGCAGCCGGCTTCACCGGGGTGGGCGGCTGGGACAGCGTCGGAGGTGTGGACAGAGTCGGCGTCTTGGGCGGCGGCGACAGCGGCGGCGCGGCGGGTCTCCTGGGCGCCCCCTCCGCCTTGGAGCTCCTGATCACGGCGAACGACGACCGGCATGCCCGGTGGCGAGGAGGCGAGACCGCGACGGCCGCGACGCCTCCCACCTTCACCTTGATGGAAGGGATGGAGGGAG]
[+] EMBL BI306608             [                CAAGATTGATCTTTCTATATGTCGGATAAAATAAGATACCTTGGACTTCATGCTTATACAGAACAATAACGTTAAACATCCGCGATCAGTCCAAATACACAATCCCAAAATTGGAGATAAGGATCTTCACTTG TTAAACAAAATCCAAGCCGGTTGCGTACTCTGTTAGCATCCCTACTGCAAACCCAAACATAGCCCATCTTCCATAGGAAATCTCATTCTTGCCCAAAAACCCAAAGAAGGGACCCTGGTCAGCCTTGTCCAGCTTCTTCTGCTTGAAGTAATCCTGCAGATCCTTGGCCACCTTCCTCTGGTTCTCCGACGTCACGGACCCCGCCGCCGA GG GCGCCGCCACAGCCACCGGCGCCGAGGTCTGCTTAGGCTCACGATCCTGCGACGGCGGCGGCGACGACCAAGGCGCAGCCGGCTTCACCGGGGTGGGCGGTTGGGACAGCGTCAGATGTGTGGACAGAGTCTGCGTCTTGGGCGGTGGCGACAGCGGCGGCGCGGCGGGTCTCCTGGGCGCCCCCTCCGCCTTGGAGCTCCTGATCACG                                                                                              ]
[-] EMBL CB679797             [                 AAGATTGATCTTTCTATATGTCGGATAAAAGAAGATACATTGTACTTCATGCTTATACAGAACAATAACGTCAAACATCCGCGATCAGTCCAAATCCACAATCCCAAAATTGGAGAGAAGGATCTTCACTTG TTGAACAAAATCCGAGCCGGTTGCGTACTCTGTTAGCATCCCTACTGCAAACCCAAACATAGCCCATCTTCCATTGGAAATCTCATTCTTGCCCAAGAACCCAAAGAAGGGACCCTGGTCAGCCTCGTCCAGCTTCTTCTGCTTGAAGTAATCCTGCAGATCCTTGGCCACCTTCCTCTGGTACTCCAACGTCACGGCCCCCGCCGCCGC GG GCGCCGCCACAGCCACCGGCGCCGCGGCCTGCTTCGGCTCAGGATCCTGCGACGGCGGCGGCGACGACGAAGGCGCAGCCGGCTTCACCGGGGTGGGCGGCTGGGACAGCGTCGGAGGTGTGGACAGAGTCGGCGTCTTGGGCGGCGGCGACAGCGGCGGCGCGGCGGGTCTCCTGGGCGCCCCCTCCGCCTTGGAGCTCCTGATCACGGCGAACGACGACCGGCATGCCCGGTGGCGAGGAGGCGAGACCGCGACGGCCGCGACGCCTCCCACCTTCACCTTGATGGAAGGGAT        ]




>consensus_7879#0
TTTTTAACAAATGTGCCAAGATTGATCTTTCTATATGTCGGATAAAAGAAGATACATTGT
ACTTCATGCTTATACAGAACAATAACGTCAAACATCCGCGATCAGTCCAAATCCACAATC
CCAAAATTGGAGAGAAGGATCTTCACTTGTTGAACAAAATCCGAGCCGGTTGCGTACTCT
GTTAGCATCCCTACTGCAAACCCAAACATAGCCCATCTTCCATTGGAAATCTCATTCTTG
CCCAAGAACCCAAAGAAGGGACCCTGGTCAGCCTCGTCCAGCTTCTTCTGCTTGAAGTAA
TCCTGCAGATCCTTGGCCACCTTCCTCTGGTTCTCCAACGTCACGGCCCCCGCCGCCGCG
GGCGCCGCCACAGCCACCGGCGCCGCGGCCTGCTTCGGCTCAGGATCCTGCGACGGCGGC
GGCGACGACGAAGGCGCAGCCGGCTTCACCGGGGTGGGCGGCTGGGACAGCGTCGGAGGT
GTGGACAGAGTCGGCGTCTTGGGCGGCGGCGACAGCGGCGGCGCGGCGGGTCTCCTGGGC
GCCCCCTCCGCCTTGGAGCTCCTGATCACGGCGAACGACGACCGGCATGCCCGGTGGCGA
GGAGGCGAGACCGCGACGGCCGCGACGCCTCCCACCTTCACCTTGATGGAAGGGATGGAG
GGAG

consensusID : consensus_7879#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 558
fasta sequence

                              [CAACAGAGAACTTTCTCTTTGTAGGATAAAAGAAGATACATAGTACTTCATGCTCTTGCAAAACAATAACGGGGAACATATCCCTATCAGGACAAATCCACACTCCCAAAATTGGTAAAAAAGGATCTTCACTTGTCGAACAAAAACCGGGCCGGGAGAAAAATATGTCAACATGCCTTCTGAAAACCCAACACATATCCATATGCCATTGAAAATCTCATTCTTGCCCAAGAACCCAAAGAAGGGACCTCTGGTCAGACTCTTGCAGATGATTCTGCTTGAAGTAATACTGCATATCCTTGGCCACCTTTCTCTGGTTCACCAACGTAACAGTCCCCCCCTCCTTGGGCGCCTTCACATCACCGGCGTCCCGGTCTGCTTAGGCTTATGAACCTAGAACGGCCGTGGCGACAACTAAAGCCCAACCGGCTTAACCGGGGTGGGCGGTTGGGACAGCATCTGAGGTGTGGACAGAGCCGGAAACTCGGGCGGTGGCCACATCCGCGGCGCCGCTGGTCTTCTGGGCGACGCCTACATCTTGGAGCATCTGATCACGGC]

[+] EMBL BI305911             [CAACAGAGAACTTTCTCTTTGTAGGATAAAAGAAGATACATAGTACTTCATGCTCTTGCAAAACAATAACGGGGAACATATCCCTATCAGGACAAATCCACACTCCCAAAATTGGTAAAAAAGGATCTTCACTTGTCGAACAAAAACCGGGCCGGGAGAAAAATATGTCAACATGCCTTCTGAAAACCCAACACATATCCATATGCCATTGAAAATCTCATTCTTGCCCAAGAACCCAAAGAAGGGACCTCTGGTCAGACTCTTGCAGATGATTCTGCTTGAAGTAATACTGCATATCCTTGGCCACCTTTCTCTGGTTCACCAACGTAACAGTCCCCCCCTCCTTGGGCGCCTTCACATCACCGGCGTCCCGGTCTGCTTAGGCTTATGAACCTAGAACGGCCGTGGCGACAACTAAAGCCCAACCGGCTTAACCGGGGTGGGCGGTTGGGACAGCATCTGAGGTGTGGACAGAGCCGGAAACTCGGGCGGTGGCCACATCCGCGGCGCCGCTGGTCTTCTGGGCGACGCCTACATCTTGGAGCATCTGATCACGGC]




>consensus_7879#1
CAACAGAGAACTTTCTCTTTGTAGGATAAAAGAAGATACATAGTACTTCATGCTCTTGCA
AAACAATAACGGGGAACATATCCCTATCAGGACAAATCCACACTCCCAAAATTGGTAAAA
AAGGATCTTCACTTGTCGAACAAAAACCGGGCCGGGAGAAAAATATGTCAACATGCCTTC
TGAAAACCCAACACATATCCATATGCCATTGAAAATCTCATTCTTGCCCAAGAACCCAAA
GAAGGGACCTCTGGTCAGACTCTTGCAGATGATTCTGCTTGAAGTAATACTGCATATCCT
TGGCCACCTTTCTCTGGTTCACCAACGTAACAGTCCCCCCCTCCTTGGGCGCCTTCACAT
CACCGGCGTCCCGGTCTGCTTAGGCTTATGAACCTAGAACGGCCGTGGCGACAACTAAAG
CCCAACCGGCTTAACCGGGGTGGGCGGTTGGGACAGCATCTGAGGTGTGGACAGAGCCGG
AAACTCGGGCGGTGGCCACATCCGCGGCGCCGCTGGTCTTCTGGGCGACGCCTACATCTT
GGAGCATCTGATCACGGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7879#0      TTTTTAACAAATGTGCCAAGATTGATCTTTCTATATGTCGGATAAAAGAAGATACATTGT 60
consensus_7879#1      ----------------CAACAGAGAACTTTCTCTTTGTAGGATAAAAGAAGATACATAGT 44
                                      *** *  ** ****** * *** ****************** **

consensus_7879#0      ACTTCATGCTTATACAGAACAATAACGTCAAACAT-CCGCGATCAGTCCAAATCCACAAT 119
consensus_7879#1      ACTTCATGCTCTTGCAAAACAATAACGGGGAACATATCCCTATCAGGACAAATCCACACT 104
                      **********  * ** **********   *****  * * *****  ********** *

consensus_7879#0      CCCAAAATTGG-AGAGAAGGATCTTCACTTGTTGAACAAAATCCGAGCCGGTTGCGTACT 178
consensus_7879#1      CCCAAAATTGGTAAAAAAGGATCTTCACTTGTCGAACAAAAACCGGGCCGGGAGAAAAAT 164
                      *********** * * **************** ******** *** *****  *   * *

consensus_7879#0      CTGTTAGCATCCCTACTGCAAACCCAA-ACATAGCCCATCTTCCATTGGAAATCTCATTC 237
consensus_7879#1      ATGTCAACATGCCTTCTGAAAACCCAACACATA-TCCATATGCCATTGAAAATCTCATTC 223
                       *** * *** *** *** ******** *****  **** * ****** ***********

consensus_7879#0      TTGCCCAAGAACCCAAAGAAGGGACC-CTGGTCAGCCTCGTCCAGCTTCTTCTGCTTGAA 296
consensus_7879#1      TTGCCCAAGAACCCAAAGAAGGGACCTCTGGTCAGACTCTTGCAGATGATTCTGCTTGAA 283
                      ************************** ******** *** * *** *  ***********

consensus_7879#0      GTAATCCTGCAGATCCTTGGCCACCTTCCTCTGGTTCTCCAACGTCACGGCCCCCGCCGC 356
consensus_7879#1      GTAATACTGCATATCCTTGGCCACCTTTCTCTGGTTCACCAACGTAACAGTCCCCCCCTC 343
                      ***** ***** *************** ********* ******* ** * **** ** *

consensus_7879#0      CGCGGGCGCCGCCACAGCCACCGGCGCCGCGGCCTGCTTCGGCTCAGGATCCTGCGACGG 416
consensus_7879#1      CTTGGGCGCCTTCACA-TCACCGGCGTCCCGGTCTGCTTAGGCTTATGAACCTAGAACGG 402
                      *  *******  ****  ******** * *** ****** **** * ** ***   ****

consensus_7879#0      CGGCGGCGACGACGAAGGCGCAGCCGGCTTCACCGGGGTGGGCGGCTGGGACAGCGTCGG 476
consensus_7879#1      CCGTGGCGACAACTAAAGCCCAACCGGCTTAACCGGGGTGGGCGGTTGGGACAGCATCTG 462
                      * * ****** ** ** ** ** ******* ************** ********* ** *

consensus_7879#0      AGGTGTGGACAGAGTCGGCGTCTTGGGCGGCGGCGACAGCGGCGGCGCGGCGGGTCTCCT 536
consensus_7879#1      AGGTGTGGACAGAGCCGGAAACTCGGGCGGTGGCCACATCCGCGGCGCCGCTGGTCTTCT 522
                      ************** ***   ** ****** *** *** * ******* ** ***** **

consensus_7879#0      GGGCGCCCCCTCCGCCTTGGAGCTCCTGATCACGGCGAACGACGACCGGCATGCCCGGTG 596
consensus_7879#1      GGGCGACGCCTACATCTTGGAGCATCTGATCACGGC------------------------ 558
                      ***** * *** *  ********  ***********                        

consensus_7879#0      GCGAGGAGGCGAGACCGCGACGGCCGCGACGCCTCCCACCTTCACCTTGATGGAAGGGAT 656
consensus_7879#1      ------------------------------------------------------------
                                                                                  

consensus_7879#0      GGAGGGAG 664
consensus_7879#1      --------