These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7880#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 853 fasta sequence [GGAGAATCCGCCTGCCATGGATTATTACTACCCCATGGAGGAGGAGGAGGAGGTGCACGAGCGCCCAAGATTCCGGCGCCCGGTCCACCCGTGGCAGTGGCACCATTGGCAGAATCTCCTCGGCCTCCTCTCGTCGTCGTCTCCGTCTCCGGCGACGGCGGCGGCGGCGCAGAGGTGCAGCCATGTCAGCTGGGAGGAGACCGCCGCCGCGCACCTCTACTCCGCCAGCCTCCCCGGTAATCAATCAAAAACATCATCTCATCGAATCTTTTGGTGCTTTGATTTCCTTGATTGATACGAAGAGAGGAATGGTGGGGTTAGGTGTGAGGAAGGAGGAGATCAGGGTGGAGGTGGAGGACGCGATGTACCTCGTCATCCGCACCGAGCTTGATGACGGTGGCGATGGCGACGGCGGAGGCGGCGGTGGCCGGAGGAGCTTCGCGAGGAAGTTCCGGCTGCCGGCGATGGTGGACGCCGACGGCATCTCGGCGGAGTACACCCACGGCGTGCTCAGGGTAACCGTCCCGAGGCTGCATACGCGGGCTCGCCCCGTCGTCAACCTCGCCGGCGGCGGCGGCGGTGGCGGTGGCCCGGCCTGCGACCCCGTCGCCCGAGCAGCCTGATTAGTGATTCGATATCAATCAAGAAAATTACTTAATTACTTATTTAAGTTGCACTGTGAGCTTAGGATTGGGGAAGTAATAGCAGTATAGTGAACTGTACAATTCTCAGGCATTTCAGAATTTCAGAAAATTGCCAAATTGGCAGTGCCTGTTCGTTATCTTGTAGTATCAGTTGTTTTTTGTGCTATAGTACTCTATTTCTGTTCTGTCGCAGTAAAACGTGAAGGATT] [+] EMBL AK063798 [GGAGAATCCGCCTGCCATGGATTATTACTACCCCATGGAGGAGGAGGAGGAGGTGCACGAGCGCCCAAGATTCCGGCGCCCGGTCCACCCGTGGCAGTGGCACCATTGGCAGAATCTCCTCGGCCTCCTCTCGTCGTCGTCTCCGTCTCCGGCGACGGCGGCGGCGGCGCAGAGGTGCAGCCATGTCAGCTGGGAGGAGACCGCCGCCGCGCACCTCTACTCCGCCAGCCTCCCCGGTAATCAATCAAAAACATCATCTCATCGAATCTTTTGGTGCTTTGATTTCCTTGATTGATACGAAGAGAGGAATGGTGGGGTTAGGTGTGAGGAAGGAGGAGATCAGGGTGGAGGTGGAGGACGCGATGTACCTCGTCATCCGCACCGAGCTTGATGACGGTGGCGATGGCGACGGCGGAGGCGGCGGTGGCCGGAGGAGCTTCGCGAGGAAGTTCCGGCTGCCGGCGATGGTGGACGCCGACGGCATCTCGGCGGAGTACACCCACGGCGTGCTCAGGGTAACCGTCCCGAGGCTGCATACGCGGGCTCGCCCCGTCGTCAACCTCGCCGGCGGCGGCGGCGGTGGCGGTGGCCCGGCCTGCGACCCCGTCGCCCGAGCAGCCTGATTAGTGATTCGATATCAATCAAGAAAATTACTTAATTACTTATTTAAGTTGCACTGTGAGCTTAGGATTGGGGAAGTAATAGCAGTATAGTGAACTGTACAATTCTCAGGCATTTCAGAATTTCAGAAAATTGCCAAATTGGCAGTGCCTGTTCGTTATCTTGTAGTATCAGTTGTTTTTTGTGCTATAGTACTCTATTTCTGTTCTGTCGCAGTAAAACGTGAAGGATT] [+] EMBL OSR24651A [ GGGTGGAGGTGGAGGACGCGATGTACCTCGTCATCCGCACCGAGCTTGATGACGGTGGCGATGGCGACGGCGGAGGCGGCGGTGGCCGGAGGAGCTTCGCGAGGAAGTTCCGGCTGCCGGCGATGGTGGACGCCGACGGCATCTCGGCGGAGTACACCCACGGCGTGCTCAGGGTAACCGTCCCGAGGNTGCATACGCGGGCTCGCCCCNTCGTCAACCTCGCCGGCGG NGCGGCGGTGGCGGTGGCCCGGCCTACNACCCCGTCGNCCGAGCAGCCTNATTAGTGATTCGATATCAATCAAGAAAATTACTTAATTACTTATTTAAGTTGCACTGTGAG ] consensusID : consensus_7880#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 814 fasta sequence [TCTCCGGCTATTTATGCAGCCGGAGAGTGACCGGGATGCGGACGCCGGCCGGAGAATCCGCCTGCCATGGATTATTACTACCCCATGGAGGAGGAGGAGGAGGTGCACGAGCGCCCAAGATTCCGGCGCCCGGTCCACCCGTGGCAGTGGCACCATTGGCAGAATCTCCTCGGCCTCCTCTCGTCGTCGTCTCCGTCTCCGGCGACGGCGGCGGCGGCGCAGAGGTGCAGCCATGTCAGCTGGGAGGAGACCGCCGCCGCGCACCTCTACTCCGCCAGCCTCCCCGGTGTGAGGAAGGAGGAGATCAGGGTGGAGGTGGAGGACGCGATGTACCTCGTCATCCGCACCGAGCTTGATGACGGTGGCGATGGCGACGGCGGAGGCGGCGGTGGCCGGAGGAGCTTCGCGAGGAAGTTCCGGCTGCCGGCGATGGTGGACGCCGACGGCATCTCGGCGGAGTACA-CCACGGCGTGCTCAGGGTAACCGTCCCGAGGCTGCATACGCGGGCTCGCCCCGTCGTCAACCTCGCCGGCGGCGGC-GGCGGTGGCGGTGGCCC-GGCCTGCGACCCCGTCGCCCGAGCAGCCTGATTAGTGATTCGATATCAATCAAGA-AAATTACTTAATT-ACTTATTT-AAGTTGCACTGTGAGCTTAGGATTGGGGAAGTAATAGCAGTATAGTGAACTGTACAATTCTCAGGCATTTCAGAATTTCAGAAAATTGCCAAATTGGCAGTGCCTGTTCGTTATCTTGTAGTATCAGTTGTTTTTTGTGCTATAGTACTCTATTTCTGTTCTGTCGCAGTAAAACGTGAAGG] [+] EMBL AK071773 [TCTCCGGCTATTTATGCAGCCGGAGAGTGACCGGGATGCGGACGCCGGCCGGAGAATCCGCCTGCCATGGATTATTACTACCCCATGGAGGAGGAGGAGGAGGTGCACGAGCGCCCAAGATTCCGGCGCCCGGTCCACCCGTGGCAGTGGCACCATTGGCAGAATCTCCTCGGCCTCCTCTCGTCGTCGTCTCCGTCTCCGGCGACGGCGGCGGCGGCGCAGAGGTGCAGCCATGTCAGCTGGGAGGAGACCGCCGCCGCGCACCTCTACTCCGCCAGCCTCCCCGGTGTGAGGAAGGAGGAGATCAGGGTGGAGGTGGAGGACGCGATGTACCTCGTCATCCGCACCGAGCTTGATGACGGTGGCGATGGCGACGGCGGAGGCGGCGGTGGCCGGAGGAGCTTCGCGAGGAAGTTCCGGCTGCCGGCGATGGTGGACGCCGACGGCATCTCGGCGGAGTACA CCACGGCGTGCTCAGGGTAACCGTCCCGAGGCTGCATACGCGGGCTCGCCCCGTCGTCAACCTCGCCGGCGGCGGC GGCGGTGGCGGTGGCCC GGCCTGCGACCCCGTCGCCCGAGCAGCCTGATTAGTGATTCGATATCAATCAAGA AAATTACTTAATT ACTTATTT AAGTTGCACTGTGAGCTTAGGATTGGGGAAGTAATAGCAGTATAGTGAACTGTACAATTCTCAGGCATTTCAGAATTTCAGAAAATTGCCAAATTGGCAGTGCCTGTTCGTTATCTTGTAGTATCAGTTGTTTTTTGTGCTATAGTACT ] [+] EMBL AK099296 [ GCCGGAGAATCCGCCTGCCATGGATTATTACTACCCCATGGAGGAGGAGGAGGAGGTGCACGAGCGCCCAAGATTCCGGCGCCCGGTCCACCCGTGGCAGTGGCACCATTGGCAGAATCTCCTCGGCCTCCTCTCGTCGTCGTCTCCGTCTCCGGCGACGGCGGCGGCGGCGCAGAGGTGCAGCCATGTCAGCTGGGAGGAGACCGCCGCCGCGCACCTCTACTCCGCCAGCCTCCCCGGTGTGAGGAAGGAGGAGATCAGGGTGGAGGTGGAGGACGCGATGTACCTCGTCATCCGCACCGAGCTTGATGACGGTGGCGATGGCGACGGCGGAGGCGGCGGTGGCCGGAGGAGCTTCGCGAGGAAGTTCCGGCTGCCGGCGATGGTGGACGCCGACGGCATCTCGGCGGAGTACACCCACGGCGTGCTCAGGGTAACCGTCCCGAGGCTGCATACGCGGGCTCGCCCCGTCGTCAACCTCGCCGGCGGCGGC GGCGGTGGCGGTGGCCC GGCCTGCGACCCCGTCGCCAGAGCAGCCTGATTAGTGATTCGATATCAATCAAGA AAATTACTTAATT ACTTATTT AAGTTGCACTGTGAGCTTAGGATTGGGGAAGTAATAGCAGTATAGTGAACTGTACAATTCTCAGGCATTTCAGAATTTCAGAAAATTGCCAAATTGGCAGTGCCTGTTCGTTATCTTGTAGTATCAGTTGTTTTTTGTGCTATAGTACTCTATTTCTGTTCTGTCGCAGTAAAACGTGAAGG] [+] EMBL AU162438 [ GGCGGCTGGCGGTGGCGGTGGCCCTGGCCTGCGNCCCCGTCGCCCGAGCAGCCTGATTAGTGATTCGATNTCATTCAAGAGNAATTACTTAATTNACTTATTTGAAGTTGCACTGTGAGCTTAGGATTGGGGAAGTAATAGCAGTATAGTGAACTGTACAATTCTCAGGCATTTCAGAATTTCAGAAAATTGCCAAATTGGCAGTGCCTGTTCGaaaaa ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7880#0 --------------------------------------------------GGAGAATCCG 10 consensus_7880#1 TCTCCGGCTATTTATGCAGCCGGAGAGTGACCGGGATGCGGACGCCGGCCGGAGAATCCG 60 ********** consensus_7880#0 CCTGCCATGGATTATTACTACCCCATGGAGGAGGAGGAGGAGGTGCACGAGCGCCCAAGA 70 consensus_7880#1 CCTGCCATGGATTATTACTACCCCATGGAGGAGGAGGAGGAGGTGCACGAGCGCCCAAGA 120 ************************************************************ consensus_7880#0 TTCCGGCGCCCGGTCCACCCGTGGCAGTGGCACCATTGGCAGAATCTCCTCGGCCTCCTC 130 consensus_7880#1 TTCCGGCGCCCGGTCCACCCGTGGCAGTGGCACCATTGGCAGAATCTCCTCGGCCTCCTC 180 ************************************************************ consensus_7880#0 TCGTCGTCGTCTCCGTCTCCGGCGACGGCGGCGGCGGCGCAGAGGTGCAGCCATGTCAGC 190 consensus_7880#1 TCGTCGTCGTCTCCGTCTCCGGCGACGGCGGCGGCGGCGCAGAGGTGCAGCCATGTCAGC 240 ************************************************************ consensus_7880#0 TGGGAGGAGACCGCCGCCGCGCACCTCTACTCCGCCAGCCTCCCCGGTAATCAATCAAAA 250 consensus_7880#1 TGGGAGGAGACCGCCGCCGCGCACCTCTACTCCGCCAGCCTCCCCGGT------------ 288 ************************************************ consensus_7880#0 ACATCATCTCATCGAATCTTTTGGTGCTTTGATTTCCTTGATTGATACGAAGAGAGGAAT 310 consensus_7880#1 ------------------------------------------------------------ consensus_7880#0 GGTGGGGTTAGGTGTGAGGAAGGAGGAGATCAGGGTGGAGGTGGAGGACGCGATGTACCT 370 consensus_7880#1 -------------GTGAGGAAGGAGGAGATCAGGGTGGAGGTGGAGGACGCGATGTACCT 335 *********************************************** consensus_7880#0 CGTCATCCGCACCGAGCTTGATGACGGTGGCGATGGCGACGGCGGAGGCGGCGGTGGCCG 430 consensus_7880#1 CGTCATCCGCACCGAGCTTGATGACGGTGGCGATGGCGACGGCGGAGGCGGCGGTGGCCG 395 ************************************************************ consensus_7880#0 GAGGAGCTTCGCGAGGAAGTTCCGGCTGCCGGCGATGGTGGACGCCGACGGCATCTCGGC 490 consensus_7880#1 GAGGAGCTTCGCGAGGAAGTTCCGGCTGCCGGCGATGGTGGACGCCGACGGCATCTCGGC 455 ************************************************************ consensus_7880#0 GGAGTACACCCACGGCGTGCTCAGGGTAACCGTCCCGAGGCTGCATACGCGGGCTCGCCC 550 consensus_7880#1 GGAGTACACC-ACGGCGTGCTCAGGGTAACCGTCCCGAGGCTGCATACGCGGGCTCGCCC 514 ********** ************************************************* consensus_7880#0 CGTCGTCAACCTCGCCGGCGGCGGCGGCGGTGGCGGTGGCCCGGCCTGCGACCCCGTCGC 610 consensus_7880#1 CGTCGTCAACCTCGCCGGCGGCGGCGGCGGTGGCGGTGGCCCGGCCTGCGACCCCGTCGC 574 ************************************************************ consensus_7880#0 CCGAGCAGCCTGATTAGTGATTCGATATCAATCAAGAAAATTACTTAATTACTTATTTAA 670 consensus_7880#1 CCGAGCAGCCTGATTAGTGATTCGATATCAATCAAGAAAATTACTTAATTACTTATTTAA 634 ************************************************************ consensus_7880#0 GTTGCACTGTGAGCTTAGGATTGGGGAAGTAATAGCAGTATAGTGAACTGTACAATTCTC 730 consensus_7880#1 GTTGCACTGTGAGCTTAGGATTGGGGAAGTAATAGCAGTATAGTGAACTGTACAATTCTC 694 ************************************************************ consensus_7880#0 AGGCATTTCAGAATTTCAGAAAATTGCCAAATTGGCAGTGCCTGTTCGTTATCTTGTAGT 790 consensus_7880#1 AGGCATTTCAGAATTTCAGAAAATTGCCAAATTGGCAGTGCCTGTTCGTTATCTTGTAGT 754 ************************************************************ consensus_7880#0 ATCAGTTGTTTTTTGTGCTATAGTACTCTATTTCTGTTCTGTCGCAGTAAAACGTGAAGG 850 consensus_7880#1 ATCAGTTGTTTTTTGTGCTATAGTACTCTATTTCTGTTCTGTCGCAGTAAAACGTGAAGG 814 ************************************************************ consensus_7880#0 ATT 853 consensus_7880#1 --- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||