These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7881#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 930 fasta sequence [CAACCCACGAGGCCTGCGCCGTCGCCCGCNACCCCCCACCCCACACTCCCTGAATGCGCCGATCTCCTCGTCCCCGATCTGGTCGGCGTTGCCTCTCCTCCTCCGGACCTCCGGTGGCTGACGCCAGGATATCGGAACCTGCCGCCCTCGTCATCCTCCTCCCCGACCGCTGATTGGAGTTCCCGATCCGCCCCTCCCGCCGTTTGCCCTCTCGGGTCCTCCACCTTCCTCTTGGAAAAAAATGGGGGCTCACCCGGCCTAGCGTTCGTTTCATGGATGCGAACCGAGGTGCATCCGCCATGGCCCCGGAGTGGTGCCGGATATGGTGGCCACAGCGGCGGCTGCAGCCCGAGCCGCTTCCCGCGCCCCAAAGGTTCGTCCTGTTCGGATGGCTCTTCGCCCGCACGGACTCCGTTGATGTTGTGGTCGGGGCGGCTCTCCCGCAGGAGGAAATCTTGCGGTCCTTCCCCACCCCAGAAGCACTCCAGACTGTCATCCTTTCCTCAAATACAAGGATGCCAGCAAGGCTACAAGAATGTGCGGCATTCACCATTCTGGGGGATTGTATGCATCTTCCAAGAGAATNTGAAGTATGCTGTAGTAAACAACATCATCAGCCATTGGGGACTCAATCTGTTCAAAAAGGGCATTTTTATATGACCCAGAACAGTCCTGTTGTATCGAGTGGATCATTGGAAAGTGGAGCCCAAGACCAAAGCGGCTACAGTAGCAAATGGGAATATGATTGTAGCATCTTAGATGGTCTTCTGGATGCTTGCAAGAAGTCAGTAGTCAAAGAGCACAACAGGGTGCACTTGTGCTTTAAGTCTAGCAAGAGCTTGAAATGCAATCTGAATCAAGTCCCTGTGCTTCATTATTTGTGCCTTGATGACCAGAAGTTTGAGACTAGTCATTGCCACGTATGTCGTA] [+] EMBL OSC104342 [CAACCCACGAGGCCTGCGCCGTCGCCCGCNACCCCCCACCCCACACTCCCTGAATGCGCCGATCTCCTCGTCCCCGATCTGGTCGGCGTTGCCTCTCCTCCTCCGGACCTCCGGTGGCTGACGCCAGGATATCGGAACCTGCCGNCCTCGTCATCCTCCTCCCCGACCGCTGATTGGAGTTCCCGATCCGACCCTNCCGCCGTTTGCCCTCTCGGGTCCTCCACCTTCCTCTTGGAAAAAAATGGGGGCTCACCCGGACTAGCGTTCGTTTCATGGATGCGAACCGAGGTGCATNCGCCATGG ] [+] EMBL CB636241 [ GCGACCCCCC CCCCACACTCCCTGACTGCGCCGATCTCCTCGTCCCCGATCTGGTCGGCGTTGCCTCTCCTCCTCCGGACCTCCGGTGGCTGACGCCAGGATATCGGAACCTGCCGCCCTCGTCATCCTCCTCCCCGACCGCTGATTGGAGTTCCCGATCCGCCCCTCCCGCCGTTTGCCCTCTCGGGTCCTCCACCTTCCTCTTGGAAAAAAATGGGGGCTCACCCGGCCTAGCGTTCGTTTCATGGATGCGAACCGAGGTGCATCCGCCATGGCCCCGGAGTGGTGCCGGATATGGTGGCCACAGCGGCGGCTGCAGCCCGAGCCGCTTCCCGCGCCCCAAAGGTTCGTCCTGTTCGGATGGCTCTTCGCCCGCACGGACTCCGTTGATGTTGTGGTCGGGGCGGCTCTCCCGCAGGAGGAAATCTTGCGGTCCTTCCCCACCCCAGAAGCACTCCAGACTGTCATCCTTTCCTCAAATACAAGGATGCCAGCAAGGCTACAAGAATGTGCGGCATTCACCATTCTGGGGGATTGTATGCATCTTCCAAGAGAATNTGA ] [+] EMBL CB633315 [ CCTCGTCCCCGATCTGGTCGGCGTTGCCTCTCCTCCTCCGGACCTCCGGTGGCTGACGCCAGGATATCGGAACCTGCCGCCCTCGTCATCCTCCTCCCCGACCGCTGATTGGAGTTCCCGATCCGCCCCTCCCGCCGTTTGCCCTCTCGGGTCCTCCACCTTCCTCTTGGAAAAAAATGGGGGCTCACCCGGCCTAGCGTTCGTTTCATGGATGCGAACCGAGGTGCATCCGCCATGGCCCCGGAGTGGTGCCGGATATGGTGGCCACAGCGGCGGCTGCAGCCCGAGCCGCTTCCCGCGCCCCAAAGGTTCGTCCTGTTCGGATGGCTCTTCGCCCGCACGGACTCCGTTGATGTTGTGGTCGGGGCGGCTCTCCCGCAGGAGGAAATCTTGCGGTCCTTCCCCACCCCAGAAGCACTCCAGACTGTCATCCTTTCCTCAAATACAAGGATGCCAGCAAGGCTACAAGAATGTGCGGCATTCACCATTCTGGGGGATTGTATGCATCTTCCAAGAGAATTTGAAGTATGCTGTAGTAAACAACATCATCAGCCATTGGGGACTCAATCTGTTCAAAAAGGGCATTTTTATATGACCCAGAACAGTCCTGTTGTATCGAGTGGATCATTGGAAAGTGGAGCCCAAGACCAAAGCGGCTACAGTAGCAAATGGGAATATGATTGTAGCATCTTAGATGGTCTTCTGGATGCTTGCAAGAAGTCAGTAGTCAAAGAGCACAACAGGGTGCACTTGTGCTTTAAGTCTAGCAAGAGCTTGAAATGCAATCTGAATCAAGTCCCTGTGCTTCATTATTTGTGCCTTGATGACCAGAAGTTTGAGACTAGTCATTGCCACGTATGTCGTA] consensusID : consensus_7881#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 880 fasta sequence [CTCGTCCCCAAACGATCTCTTACTACTTCTTTTGTGCTGATTGGATTAGATTCAAAGAAACATTGGAGGTAGATCCATCATAAATAAGTTCATTAATCCTTGAAGGGGTTATCTACTGTCTAGTGCCCCTCTATGTGGCTGTTGCATCCCTTTTTATCTGACCCATCCAAACCTCATCTAATGGCTGACATAGAGAGTCAGCAAATTAACATCCACAGTTCGTGGGTTGTGGCAAAATGGCAACACCCTCTCCTGACCATACTGTCTCTCCTGGACTGTCATCCTTTCCTCAAATACAAGGATGCCAGCAAGGCTACAAGAATGTGCGGCATTCACCATTCTGGGGGATTGTATGCATCTTCCAAGAGAATTTGAAGTATGCTGTAGTAAACAACATCATCAGCCATTGGGGACTCAATCTGTTCAAAAAGGGCATTTTTATATGACCCAGAACAGTCCTGTTGTATCGAGTGGATCATTGGAAAGTGGAGCCCAAGACCAAAGCGGCTACAGTAGCAAATGGGAATATGATTGTAGCATCTTAGATGGTCTTCTGGATGCTTGCAAGAAGTCAGTAGTCAAAGAGCACAACAGGGTGCACTTGTGCTTTAAGTCTAGCAAGAGCTTGAAATGCAATCTGAATCAAGTCCCTGTGCTTCATTATTTGTGCCCTTGATGACCAGAAAGTTTGAGACTAGTCATTGGCACGTATGTCGTACTATATGATGGTCCAACTGCTTGNGGNAACCATTTTTTCCTGGGTGAGGATGCACCTTGCAGATCAAAGTCTTCCTTCAAAAGNCAAATGGATAAATAATCTANATGCAACGATTANAATTGATTTGGATCCAATATTTTGGGACTTAATTGGTCAAAGCTG] [+] EMBL CA764504 [CTCGTCCCCAAACGATCTCTTACTACTTCTTTTGTGCTGATTGGATTAGATTCAAAGAAACATTGGAGGTAGATCCATCATAAATAAGTTCATTAATCCTTGAAGGGGTTATCTACTGTCTAGTGCCCCTCTATGTGGCTGTTGCATCCCTTTTTATCTGACCCATCCAAACCTCATCTAATGGCTGACATAGAGAGTCAGCAAATTAACATCCACAGTTCGTGGGTTGTGGCAAAATGGCAACACCCTCTCCTGACCATACTGTCTCTCCTGGACTGTCATCCTTTCCTCAAATACAAGGATGCCAGCAAGGCTACAAGAATGTGCGGCATTCACCATTCTGGGGGATTGTATGCATCTTCCAAGAGAATTTGAAGTATGCTGTAGTAAACAACATCATCAGCCATTGGGGACTCAATCTGTTCAAAAAGGGCATTTTTATATGACCCAGAACAGTCCTGTTGTATCGAGTGGATCATTGGAAAGTGGAGCCCAAGACCAAAGCGGCTACAGTAGCAAATGGGAATATGATTGTAGCATCTTAGATGGTCTTCTGGATGCTTGCAAGAAGTCAGTAGTCAAAGAGCACAACAGGGTGCACTTGTGCTTTAAGTCTAGCAAGAGCTTGAAATGCAATCTGAATCAAGTCCCTGTGCTTCATTATTTGTGCCCTTGATGACCAGAAAGTTTGAGACTAGTCATTGGCACGTATGTCGTACTATATGATGGTCCAACTGCTTGNGGNAACCATTTTTTCCTGGGTGAGGATGCACCTTGCAGATCAAAGTCTTCCTTCAAAAGNCAAATGGATAAATAATCTANATGCAACGATTANAATTGATTTGGATCCAATATTTTGGGACTTAATTGGTCAAAGCTG] consensusID : consensus_7881#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 584 fasta sequence [CTCCTTGACTGCGCCGATCTCCTCGTCCCCGATCTGGTCGGCGTTGCCTCTCCTCCTCCGGACCTCCGGTGGCTGACGCCAGGATATCGGAACCTGCCGCCCTCGTCATCCTCCTCCCCGACCGCTGATTGGAGTTCCCGATCCGCCCCTCCCGCCGTTTGCCCTCTCGGGTCCTCCACCTTCCTCTTGGAAAAAAATGGGGGCTCACCCGGCCTAGCGTTCGTTTCATGGATGCGAACCGAGGTGCATCCGCCATGGCCCCGGAGTGGTGCCCGGATATGGTGGCCACAGCGGCGGCTGCAGCCCGAGCCGCTTCCCGCGCCCCAAAGGTCCTCCTGTTCGGATGGCTCTTCGCCCGCACGGACTCCGTTTGATGTTGGGGTCGGGGCGGGTCCTCCCGGAGGAGGAAAATTCTGGGGTCCCTTCCCCACCCCAAAAGCACTCCCGAATGGTCATCTTTTCCTACAAAACCAGGATGCGCCGCAGGGTTCCCAAAAAGGGGGGGGTTTTCCCCTTTCTGGGGGGATGGGTTGGCTCTTCCCAGAGAAATTTGAAAATATGTTGGAAAAAAAAAACCCCCCCCC] [+] EMBL CA755200 [CTCCTTGACTGCGCCGATCTCCTCGTCCCCGATCTGGTCGGCGTTGCCTCTCCTCCTCCGGACCTCCGGTGGCTGACGCCAGGATATCGGAACCTGCCGCCCTCGTCATCCTCCTCCCCGACCGCTGATTGGAGTTCCCGATCCGCCCCTCCCGCCGTTTGCCCTCTCGGGTCCTCCACCTTCCTCTTGGAAAAAAATGGGGGCTCACCCGGCCTAGCGTTCGTTTCATGGATGCGAACCGAGGTGCATCCGCCATGGCCCCGGAGTGGTGCCCGGATATGGTGGCCACAGCGGCGGCTGCAGCCCGAGCCGCTTCCCGCGCCCCAAAGGTCCTCCTGTTCGGATGGCTCTTCGCCCGCACGGACTCCGTTTGATGTTGGGGTCGGGGCGGGTCCTCCCGGAGGAGGAAAATTCTGGGGTCCCTTCCCCACCCCAAAAGCACTCCCGAATGGTCATCTTTTCCTACAAAACCAGGATGCGCCGCAGGGTTCCCAAAAAGGGGGGGGTTTTCCCCTTTCTGGGGGGATGGGTTGGCTCTTCCCAGAGAAATTTGAAAATATGTTGGAAAAAAAAAACCCCCCCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7881#0 --------------------------------------------------CAACCCACGA 10 consensus_7881#2 ------------------------------------------------------------ consensus_7881#1 CTCGTCCCCAAACGATCTCTTACTACTTCTTTTGTGCTGATTGGATTAGATTCAAAGAAA 60 consensus_7881#0 GGCCTGCGCCGTCGCCCGCNACCCCCCACCCCACACTCCCTGAATGCGCCG---ATCTCC 67 consensus_7881#2 -----------------------------------CTCCTTGACTGCGCCG---ATCTCC 22 consensus_7881#1 CATTGGAGGTAGATCCATCATAAATAAGTTCATTAATCCTTGAAGGGGTTATCTACTGTC 120 *** *** * * * * consensus_7881#0 TCGTCCCCGATCTGGTCGGCGTTGCCTCTCCTCCT--CCGGACCTCCGGTGGCTGACGCC 125 consensus_7881#2 TCGTCCCCGATCTGGTCGGCGTTGCCTCTCCTCCT--CCGGACCTCCGGTGGCTGACGCC 80 consensus_7881#1 TAGTGCCCCTCTATGTGGCTGTTGCATCCCTTTTTATCTGACCCATCCAAACCTCATCTA 180 * ** *** ** * ***** ** * * * * * ** * ** * consensus_7881#0 A-GGATATCGGAACCTGCCGCCC--TCGTCATCCTCCTCCCCGACCGCTGATTGGAGTTC 182 consensus_7881#2 A-GGATATCGGAACCTGCCGCCC--TCGTCATCCTCCTCCCCGACCGCTGATTGGAGTTC 137 consensus_7881#1 ATGGCTGACATAGAGAGTCAGCAAATTAACATCCACAGTTC-GTGGGTTGTGGCAAAATG 239 * ** * * * * * * * ***** * * * * ** * * consensus_7881#0 CCGATCCGCCCCTCCCGCCGT-TTGCCCTCTCGGGTCCTCCACCTTCCTCTTGGAAAAAA 241 consensus_7881#2 CCGATCCGCCCCTCCCGCCGT-TTGCCCTCTCGGGTCCTCCACCTTCCTCTTGGAAAAAA 196 consensus_7881#1 GCAACACCCTCTCCTGACCATACTGTCTCTCCTGGACTGTCATCCTTTCCTC--AAATAC 297 * * * * * * ** * ** * * ** * ** * * ** *** * consensus_7881#0 ATGGGGGCTCACCCGGCCTAGCGTTCGTTTCATGGATGCGAACCGAGGTGCATCCGC-CA 300 consensus_7881#2 ATGGGGGCTCACCCGGCCTAGCGTTCGTTTCATGGATGCGAACCGAGGTGCATCCGC-CA 255 consensus_7881#1 AAGGATGCCAGCAAGGCTACAAGAATGTGCGGCATTCACCATTCTGGGGGATTGTATGCA 357 * ** ** * *** * ** * * * ** * * ** consensus_7881#0 TGGCCCCGGAGTGGTGCC-GGATATGGTGGCCA-CAGCGGCGGCTGCAGCCCGAGCCGCT 358 consensus_7881#2 TGGCCCCGGAGTGGTGCCCGGATATGGTGGCCA-CAGCGGCGGCTGCAGCCCGAGCCGCT 314 consensus_7881#1 TCTTCCAAGAGAATTTGAAGTATGCTGTAGTAAACAACATCATCAGCCATTGGGGACTCA 417 * ** *** * * ** ** * * ** * * * ** * * * * consensus_7881#0 TCCCGCGCCCCAAAGGTTCGTCCTGTTCGG---ATGGCTCTTCGCCCGCACGGACT---C 412 consensus_7881#2 TCCCGCGCCCCAAAGGTCC-TCCTGTTCGG---ATGGCTCTTCGCCCGCACGGACT---C 367 consensus_7881#1 ATCTGT-TCAAAAAGGGCATTTTTATATGACCCAGAACAGTCCTGTTGTATCGAGTGGAT 476 * * * ***** * * * * * * * * * * ** * consensus_7881#0 CGTT-GATGTTGTGGTC-GGGGCGGCTC-TCCCGCAGGAGGAAA--TCTTGCGGTCCTTC 467 consensus_7881#2 CGTTTGATGTTGGGGTC-GGGGCGGGTCCTCCCGGAGGAGGAAAATTCTGGGGTCCCTTC 426 consensus_7881#1 CATTGGAAAGTGGAGCCCAAGACCAAAGCGGCTACAGTAGCAAA-TGGGAATATGATTGT 535 * ** ** ** * * * * * ** ** *** * consensus_7881#0 CCCACCCCAGAAGCACTCCAGACTG-TCATCCTTTCCTCAAATACAAGGATGC-CAGCAA 525 consensus_7881#2 CCCACCCCAAAAGCACTCCCGAATGGTCATCTTTTCCTACAAAACCAGGATGCGCCGCAG 486 consensus_7881#1 AGCATCTTAGATGGTCTTCTGGATGCTTGCAAGAAGTCAGTAGTCAAAGA-GCACAACAG 594 ** * * * * ** * * ** * * * * ** ** * ** consensus_7881#0 GGCTAC--AAGAATGTGCGGCATTCACCATTCTGGGGGAT----TGTAT---GCATCTTC 576 consensus_7881#2 GGTTCCCAAAAAGGGGGGGGTTTTCCCCTTTCTGGGGGGA----TGGGTT--GGCTCTTC 540 consensus_7881#1 GGTGCACTTGTGCTTTAAGTCTAGCAAGAGCTTGAAATGCAATCTGAATCAAGTCCCTGT 654 ** * * ** ** * * ** consensus_7881#0 CAAGAGAATNTGAAGTATGCTGTAGTAAACAAC----ATCATCAGCCATTGGGGACTCAA 632 consensus_7881#2 CCAGAGAAATTTGAAAATATGTTGGAAAAAAAA----AACCCCCCCCC------------ 584 consensus_7881#1 GCTTCATTATTTGTGCCCTTGATGACCAGAAAGTTTGAGACTAGTCATTGGCACGTATGT 714 * * * ** * * consensus_7881#0 TCTGTTCAAAAAGGGCATTTTTATATGACCCAGAACAGTCCTGTTGTATCGAGTGGATCA 692 consensus_7881#2 ------------------------------------------------------------ consensus_7881#1 CGTACTATATGATGGTCCAACTGCTTGNGGNAACCATTTTTTCCTGGGTGAGGATGCACC 774 consensus_7881#0 TTGGAAAGTGGAGCCCAAGACCAAAGCGGCTACAGTAGCAAATGGGAATATGATTGTAGC 752 consensus_7881#2 ------------------------------------------------------------ consensus_7881#1 TTGCAGATCAAAGTCTTCCTTCAAAAGNCAAATGGATAAATAATCTANATGCAACGATTA 834 consensus_7881#0 ATCTTAGATGGTCTTCTGGATGCTTGCAAGAAGTCAGTAGTCAAAGAGCACAACAGGGTG 812 consensus_7881#2 ------------------------------------------------------------ consensus_7881#1 NAATTGATTTGGATCCAATATTTTGGGACTTAATTGGTCAAAGCTG-------------- 880 consensus_7881#0 CACTTGTGCTTTAAGTCTAGCAAGAGCTTGAAATGCAATCTGAATCAAGTCCCTGTGCTT 872 consensus_7881#2 ------------------------------------------------------------ consensus_7881#1 ------------------------------------------------------------ consensus_7881#0 CATTATTTGTGCCTTGATGACCAGAAGTTTGAGACTAGTCATTGCCACGTATGTCGTA 930 consensus_7881#2 ---------------------------------------------------------- consensus_7881#1 ---------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||