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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7881#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 930 fasta sequence
[CAACCCACGAGGCCTGCGCCGTCGCCCGCNACCCCCCACCCCACACTCCCTGAATGCGCCGATCTCCTCGTCCCCGATCTGGTCGGCGTTGCCTCTCCTCCTCCGGACCTCCGGTGGCTGACGCCAGGATATCGGAACCTGCCGCCCTCGTCATCCTCCTCCCCGACCGCTGATTGGAGTTCCCGATCCGCCCCTCCCGCCGTTTGCCCTCTCGGGTCCTCCACCTTCCTCTTGGAAAAAAATGGGGGCTCACCCGGCCTAGCGTTCGTTTCATGGATGCGAACCGAGGTGCATCCGCCATGGCCCCGGAGTGGTGCCGGATATGGTGGCCACAGCGGCGGCTGCAGCCCGAGCCGCTTCCCGCGCCCCAAAGGTTCGTCCTGTTCGGATGGCTCTTCGCCCGCACGGACTCCGTTGATGTTGTGGTCGGGGCGGCTCTCCCGCAGGAGGAAATCTTGCGGTCCTTCCCCACCCCAGAAGCACTCCAGACTGTCATCCTTTCCTCAAATACAAGGATGCCAGCAAGGCTACAAGAATGTGCGGCATTCACCATTCTGGGGGATTGTATGCATCTTCCAAGAGAATNTGAAGTATGCTGTAGTAAACAACATCATCAGCCATTGGGGACTCAATCTGTTCAAAAAGGGCATTTTTATATGACCCAGAACAGTCCTGTTGTATCGAGTGGATCATTGGAAAGTGGAGCCCAAGACCAAAGCGGCTACAGTAGCAAATGGGAATATGATTGTAGCATCTTAGATGGTCTTCTGGATGCTTGCAAGAAGTCAGTAGTCAAAGAGCACAACAGGGTGCACTTGTGCTTTAAGTCTAGCAAGAGCTTGAAATGCAATCTGAATCAAGTCCCTGTGCTTCATTATTTGTGCCTTGATGACCAGAAGTTTGAGACTAGTCATTGCCACGTATGTCGTA]
[+] EMBL OSC104342 [CAACCCACGAGGCCTGCGCCGTCGCCCGCNACCCCCCACCCCACACTCCCTGAATGCGCCGATCTCCTCGTCCCCGATCTGGTCGGCGTTGCCTCTCCTCCTCCGGACCTCCGGTGGCTGACGCCAGGATATCGGAACCTGCCGNCCTCGTCATCCTCCTCCCCGACCGCTGATTGGAGTTCCCGATCCGACCCTNCCGCCGTTTGCCCTCTCGGGTCCTCCACCTTCCTCTTGGAAAAAAATGGGGGCTCACCCGGACTAGCGTTCGTTTCATGGATGCGAACCGAGGTGCATNCGCCATGG ]
[+] EMBL CB636241 [ GCGACCCCCC CCCCACACTCCCTGACTGCGCCGATCTCCTCGTCCCCGATCTGGTCGGCGTTGCCTCTCCTCCTCCGGACCTCCGGTGGCTGACGCCAGGATATCGGAACCTGCCGCCCTCGTCATCCTCCTCCCCGACCGCTGATTGGAGTTCCCGATCCGCCCCTCCCGCCGTTTGCCCTCTCGGGTCCTCCACCTTCCTCTTGGAAAAAAATGGGGGCTCACCCGGCCTAGCGTTCGTTTCATGGATGCGAACCGAGGTGCATCCGCCATGGCCCCGGAGTGGTGCCGGATATGGTGGCCACAGCGGCGGCTGCAGCCCGAGCCGCTTCCCGCGCCCCAAAGGTTCGTCCTGTTCGGATGGCTCTTCGCCCGCACGGACTCCGTTGATGTTGTGGTCGGGGCGGCTCTCCCGCAGGAGGAAATCTTGCGGTCCTTCCCCACCCCAGAAGCACTCCAGACTGTCATCCTTTCCTCAAATACAAGGATGCCAGCAAGGCTACAAGAATGTGCGGCATTCACCATTCTGGGGGATTGTATGCATCTTCCAAGAGAATNTGA ]
[+] EMBL CB633315 [ CCTCGTCCCCGATCTGGTCGGCGTTGCCTCTCCTCCTCCGGACCTCCGGTGGCTGACGCCAGGATATCGGAACCTGCCGCCCTCGTCATCCTCCTCCCCGACCGCTGATTGGAGTTCCCGATCCGCCCCTCCCGCCGTTTGCCCTCTCGGGTCCTCCACCTTCCTCTTGGAAAAAAATGGGGGCTCACCCGGCCTAGCGTTCGTTTCATGGATGCGAACCGAGGTGCATCCGCCATGGCCCCGGAGTGGTGCCGGATATGGTGGCCACAGCGGCGGCTGCAGCCCGAGCCGCTTCCCGCGCCCCAAAGGTTCGTCCTGTTCGGATGGCTCTTCGCCCGCACGGACTCCGTTGATGTTGTGGTCGGGGCGGCTCTCCCGCAGGAGGAAATCTTGCGGTCCTTCCCCACCCCAGAAGCACTCCAGACTGTCATCCTTTCCTCAAATACAAGGATGCCAGCAAGGCTACAAGAATGTGCGGCATTCACCATTCTGGGGGATTGTATGCATCTTCCAAGAGAATTTGAAGTATGCTGTAGTAAACAACATCATCAGCCATTGGGGACTCAATCTGTTCAAAAAGGGCATTTTTATATGACCCAGAACAGTCCTGTTGTATCGAGTGGATCATTGGAAAGTGGAGCCCAAGACCAAAGCGGCTACAGTAGCAAATGGGAATATGATTGTAGCATCTTAGATGGTCTTCTGGATGCTTGCAAGAAGTCAGTAGTCAAAGAGCACAACAGGGTGCACTTGTGCTTTAAGTCTAGCAAGAGCTTGAAATGCAATCTGAATCAAGTCCCTGTGCTTCATTATTTGTGCCTTGATGACCAGAAGTTTGAGACTAGTCATTGCCACGTATGTCGTA]
consensusID : consensus_7881#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 880 fasta sequence
[CTCGTCCCCAAACGATCTCTTACTACTTCTTTTGTGCTGATTGGATTAGATTCAAAGAAACATTGGAGGTAGATCCATCATAAATAAGTTCATTAATCCTTGAAGGGGTTATCTACTGTCTAGTGCCCCTCTATGTGGCTGTTGCATCCCTTTTTATCTGACCCATCCAAACCTCATCTAATGGCTGACATAGAGAGTCAGCAAATTAACATCCACAGTTCGTGGGTTGTGGCAAAATGGCAACACCCTCTCCTGACCATACTGTCTCTCCTGGACTGTCATCCTTTCCTCAAATACAAGGATGCCAGCAAGGCTACAAGAATGTGCGGCATTCACCATTCTGGGGGATTGTATGCATCTTCCAAGAGAATTTGAAGTATGCTGTAGTAAACAACATCATCAGCCATTGGGGACTCAATCTGTTCAAAAAGGGCATTTTTATATGACCCAGAACAGTCCTGTTGTATCGAGTGGATCATTGGAAAGTGGAGCCCAAGACCAAAGCGGCTACAGTAGCAAATGGGAATATGATTGTAGCATCTTAGATGGTCTTCTGGATGCTTGCAAGAAGTCAGTAGTCAAAGAGCACAACAGGGTGCACTTGTGCTTTAAGTCTAGCAAGAGCTTGAAATGCAATCTGAATCAAGTCCCTGTGCTTCATTATTTGTGCCCTTGATGACCAGAAAGTTTGAGACTAGTCATTGGCACGTATGTCGTACTATATGATGGTCCAACTGCTTGNGGNAACCATTTTTTCCTGGGTGAGGATGCACCTTGCAGATCAAAGTCTTCCTTCAAAAGNCAAATGGATAAATAATCTANATGCAACGATTANAATTGATTTGGATCCAATATTTTGGGACTTAATTGGTCAAAGCTG]
[+] EMBL CA764504 [CTCGTCCCCAAACGATCTCTTACTACTTCTTTTGTGCTGATTGGATTAGATTCAAAGAAACATTGGAGGTAGATCCATCATAAATAAGTTCATTAATCCTTGAAGGGGTTATCTACTGTCTAGTGCCCCTCTATGTGGCTGTTGCATCCCTTTTTATCTGACCCATCCAAACCTCATCTAATGGCTGACATAGAGAGTCAGCAAATTAACATCCACAGTTCGTGGGTTGTGGCAAAATGGCAACACCCTCTCCTGACCATACTGTCTCTCCTGGACTGTCATCCTTTCCTCAAATACAAGGATGCCAGCAAGGCTACAAGAATGTGCGGCATTCACCATTCTGGGGGATTGTATGCATCTTCCAAGAGAATTTGAAGTATGCTGTAGTAAACAACATCATCAGCCATTGGGGACTCAATCTGTTCAAAAAGGGCATTTTTATATGACCCAGAACAGTCCTGTTGTATCGAGTGGATCATTGGAAAGTGGAGCCCAAGACCAAAGCGGCTACAGTAGCAAATGGGAATATGATTGTAGCATCTTAGATGGTCTTCTGGATGCTTGCAAGAAGTCAGTAGTCAAAGAGCACAACAGGGTGCACTTGTGCTTTAAGTCTAGCAAGAGCTTGAAATGCAATCTGAATCAAGTCCCTGTGCTTCATTATTTGTGCCCTTGATGACCAGAAAGTTTGAGACTAGTCATTGGCACGTATGTCGTACTATATGATGGTCCAACTGCTTGNGGNAACCATTTTTTCCTGGGTGAGGATGCACCTTGCAGATCAAAGTCTTCCTTCAAAAGNCAAATGGATAAATAATCTANATGCAACGATTANAATTGATTTGGATCCAATATTTTGGGACTTAATTGGTCAAAGCTG]
consensusID : consensus_7881#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 584 fasta sequence
[CTCCTTGACTGCGCCGATCTCCTCGTCCCCGATCTGGTCGGCGTTGCCTCTCCTCCTCCGGACCTCCGGTGGCTGACGCCAGGATATCGGAACCTGCCGCCCTCGTCATCCTCCTCCCCGACCGCTGATTGGAGTTCCCGATCCGCCCCTCCCGCCGTTTGCCCTCTCGGGTCCTCCACCTTCCTCTTGGAAAAAAATGGGGGCTCACCCGGCCTAGCGTTCGTTTCATGGATGCGAACCGAGGTGCATCCGCCATGGCCCCGGAGTGGTGCCCGGATATGGTGGCCACAGCGGCGGCTGCAGCCCGAGCCGCTTCCCGCGCCCCAAAGGTCCTCCTGTTCGGATGGCTCTTCGCCCGCACGGACTCCGTTTGATGTTGGGGTCGGGGCGGGTCCTCCCGGAGGAGGAAAATTCTGGGGTCCCTTCCCCACCCCAAAAGCACTCCCGAATGGTCATCTTTTCCTACAAAACCAGGATGCGCCGCAGGGTTCCCAAAAAGGGGGGGGTTTTCCCCTTTCTGGGGGGATGGGTTGGCTCTTCCCAGAGAAATTTGAAAATATGTTGGAAAAAAAAAACCCCCCCCC]
[+] EMBL CA755200 [CTCCTTGACTGCGCCGATCTCCTCGTCCCCGATCTGGTCGGCGTTGCCTCTCCTCCTCCGGACCTCCGGTGGCTGACGCCAGGATATCGGAACCTGCCGCCCTCGTCATCCTCCTCCCCGACCGCTGATTGGAGTTCCCGATCCGCCCCTCCCGCCGTTTGCCCTCTCGGGTCCTCCACCTTCCTCTTGGAAAAAAATGGGGGCTCACCCGGCCTAGCGTTCGTTTCATGGATGCGAACCGAGGTGCATCCGCCATGGCCCCGGAGTGGTGCCCGGATATGGTGGCCACAGCGGCGGCTGCAGCCCGAGCCGCTTCCCGCGCCCCAAAGGTCCTCCTGTTCGGATGGCTCTTCGCCCGCACGGACTCCGTTTGATGTTGGGGTCGGGGCGGGTCCTCCCGGAGGAGGAAAATTCTGGGGTCCCTTCCCCACCCCAAAAGCACTCCCGAATGGTCATCTTTTCCTACAAAACCAGGATGCGCCGCAGGGTTCCCAAAAAGGGGGGGGTTTTCCCCTTTCTGGGGGGATGGGTTGGCTCTTCCCAGAGAAATTTGAAAATATGTTGGAAAAAAAAAACCCCCCCCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7881#0 --------------------------------------------------CAACCCACGA 10
consensus_7881#2 ------------------------------------------------------------
consensus_7881#1 CTCGTCCCCAAACGATCTCTTACTACTTCTTTTGTGCTGATTGGATTAGATTCAAAGAAA 60
consensus_7881#0 GGCCTGCGCCGTCGCCCGCNACCCCCCACCCCACACTCCCTGAATGCGCCG---ATCTCC 67
consensus_7881#2 -----------------------------------CTCCTTGACTGCGCCG---ATCTCC 22
consensus_7881#1 CATTGGAGGTAGATCCATCATAAATAAGTTCATTAATCCTTGAAGGGGTTATCTACTGTC 120
*** *** * * * *
consensus_7881#0 TCGTCCCCGATCTGGTCGGCGTTGCCTCTCCTCCT--CCGGACCTCCGGTGGCTGACGCC 125
consensus_7881#2 TCGTCCCCGATCTGGTCGGCGTTGCCTCTCCTCCT--CCGGACCTCCGGTGGCTGACGCC 80
consensus_7881#1 TAGTGCCCCTCTATGTGGCTGTTGCATCCCTTTTTATCTGACCCATCCAAACCTCATCTA 180
* ** *** ** * ***** ** * * * * * ** * ** *
consensus_7881#0 A-GGATATCGGAACCTGCCGCCC--TCGTCATCCTCCTCCCCGACCGCTGATTGGAGTTC 182
consensus_7881#2 A-GGATATCGGAACCTGCCGCCC--TCGTCATCCTCCTCCCCGACCGCTGATTGGAGTTC 137
consensus_7881#1 ATGGCTGACATAGAGAGTCAGCAAATTAACATCCACAGTTC-GTGGGTTGTGGCAAAATG 239
* ** * * * * * * * ***** * * * * ** * *
consensus_7881#0 CCGATCCGCCCCTCCCGCCGT-TTGCCCTCTCGGGTCCTCCACCTTCCTCTTGGAAAAAA 241
consensus_7881#2 CCGATCCGCCCCTCCCGCCGT-TTGCCCTCTCGGGTCCTCCACCTTCCTCTTGGAAAAAA 196
consensus_7881#1 GCAACACCCTCTCCTGACCATACTGTCTCTCCTGGACTGTCATCCTTTCCTC--AAATAC 297
* * * * * * ** * ** * * ** * ** * * ** *** *
consensus_7881#0 ATGGGGGCTCACCCGGCCTAGCGTTCGTTTCATGGATGCGAACCGAGGTGCATCCGC-CA 300
consensus_7881#2 ATGGGGGCTCACCCGGCCTAGCGTTCGTTTCATGGATGCGAACCGAGGTGCATCCGC-CA 255
consensus_7881#1 AAGGATGCCAGCAAGGCTACAAGAATGTGCGGCATTCACCATTCTGGGGGATTGTATGCA 357
* ** ** * *** * ** * * * ** * * **
consensus_7881#0 TGGCCCCGGAGTGGTGCC-GGATATGGTGGCCA-CAGCGGCGGCTGCAGCCCGAGCCGCT 358
consensus_7881#2 TGGCCCCGGAGTGGTGCCCGGATATGGTGGCCA-CAGCGGCGGCTGCAGCCCGAGCCGCT 314
consensus_7881#1 TCTTCCAAGAGAATTTGAAGTATGCTGTAGTAAACAACATCATCAGCCATTGGGGACTCA 417
* ** *** * * ** ** * * ** * * * ** * * * *
consensus_7881#0 TCCCGCGCCCCAAAGGTTCGTCCTGTTCGG---ATGGCTCTTCGCCCGCACGGACT---C 412
consensus_7881#2 TCCCGCGCCCCAAAGGTCC-TCCTGTTCGG---ATGGCTCTTCGCCCGCACGGACT---C 367
consensus_7881#1 ATCTGT-TCAAAAAGGGCATTTTTATATGACCCAGAACAGTCCTGTTGTATCGAGTGGAT 476
* * * ***** * * * * * * * * * * ** *
consensus_7881#0 CGTT-GATGTTGTGGTC-GGGGCGGCTC-TCCCGCAGGAGGAAA--TCTTGCGGTCCTTC 467
consensus_7881#2 CGTTTGATGTTGGGGTC-GGGGCGGGTCCTCCCGGAGGAGGAAAATTCTGGGGTCCCTTC 426
consensus_7881#1 CATTGGAAAGTGGAGCCCAAGACCAAAGCGGCTACAGTAGCAAA-TGGGAATATGATTGT 535
* ** ** ** * * * * * ** ** *** *
consensus_7881#0 CCCACCCCAGAAGCACTCCAGACTG-TCATCCTTTCCTCAAATACAAGGATGC-CAGCAA 525
consensus_7881#2 CCCACCCCAAAAGCACTCCCGAATGGTCATCTTTTCCTACAAAACCAGGATGCGCCGCAG 486
consensus_7881#1 AGCATCTTAGATGGTCTTCTGGATGCTTGCAAGAAGTCAGTAGTCAAAGA-GCACAACAG 594
** * * * * ** * * ** * * * * ** ** * **
consensus_7881#0 GGCTAC--AAGAATGTGCGGCATTCACCATTCTGGGGGAT----TGTAT---GCATCTTC 576
consensus_7881#2 GGTTCCCAAAAAGGGGGGGGTTTTCCCCTTTCTGGGGGGA----TGGGTT--GGCTCTTC 540
consensus_7881#1 GGTGCACTTGTGCTTTAAGTCTAGCAAGAGCTTGAAATGCAATCTGAATCAAGTCCCTGT 654
** * * ** ** * * **
consensus_7881#0 CAAGAGAATNTGAAGTATGCTGTAGTAAACAAC----ATCATCAGCCATTGGGGACTCAA 632
consensus_7881#2 CCAGAGAAATTTGAAAATATGTTGGAAAAAAAA----AACCCCCCCCC------------ 584
consensus_7881#1 GCTTCATTATTTGTGCCCTTGATGACCAGAAAGTTTGAGACTAGTCATTGGCACGTATGT 714
* * * ** * *
consensus_7881#0 TCTGTTCAAAAAGGGCATTTTTATATGACCCAGAACAGTCCTGTTGTATCGAGTGGATCA 692
consensus_7881#2 ------------------------------------------------------------
consensus_7881#1 CGTACTATATGATGGTCCAACTGCTTGNGGNAACCATTTTTTCCTGGGTGAGGATGCACC 774
consensus_7881#0 TTGGAAAGTGGAGCCCAAGACCAAAGCGGCTACAGTAGCAAATGGGAATATGATTGTAGC 752
consensus_7881#2 ------------------------------------------------------------
consensus_7881#1 TTGCAGATCAAAGTCTTCCTTCAAAAGNCAAATGGATAAATAATCTANATGCAACGATTA 834
consensus_7881#0 ATCTTAGATGGTCTTCTGGATGCTTGCAAGAAGTCAGTAGTCAAAGAGCACAACAGGGTG 812
consensus_7881#2 ------------------------------------------------------------
consensus_7881#1 NAATTGATTTGGATCCAATATTTTGGGACTTAATTGGTCAAAGCTG-------------- 880
consensus_7881#0 CACTTGTGCTTTAAGTCTAGCAAGAGCTTGAAATGCAATCTGAATCAAGTCCCTGTGCTT 872
consensus_7881#2 ------------------------------------------------------------
consensus_7881#1 ------------------------------------------------------------
consensus_7881#0 CATTATTTGTGCCTTGATGACCAGAAGTTTGAGACTAGTCATTGCCACGTATGTCGTA 930
consensus_7881#2 ----------------------------------------------------------
consensus_7881#1 ----------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||