These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7887#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 3167 fasta sequence [GCTGTGGTTCTCTGACGAAAATGCCACTCACTTTCCCCACACGCGTTCGTCACTCCAAGCTCGATGTCTCTCCCCCGCCGCTTTGGATCAATCGTCAGCGACTCACCATTCGGCGACTCGGCCATTGACAGCGATAGTCGCACGGGTTCTTGCTTATTTGGATCCGTTCTTCCGGGGAGCGAGCTAACCGGGCGAGCGAGATGCAGCACCAGCAAGGATTTGATACACACAGGCTACACCAGGAAGTAAAATCGCGGTGGTTAAAGCCTAAAGAGGTTCTGCAGATATTGCAGAATCATGATCGGTTCATCATCACACATAAGACTCCTCATAAGCCACCGAGTGGTGCTTGGTTTCTTTTCAACCGTAGAGTTCTTCGGTACTTCAGAAATGATGGGTATGAATGGCGAAAAAAGAAGAATGGGAAGACTATTGCTGAAGCCCATGAGCGCCTTAAGGTTGATAATGTTGATGCACTGAATTGCTACTATGCACACGCAGACAAAAACTCTACATTTCAGAGGCGTATATATTGGATGCTTGATCCGGCTTATGATCACATAGTTTTTGTCCACTACAGAGATGTTCAAGAGGGCAGCATTTCAGTATCAGCACTGAATGATTCATCAACATCCAATCAGAATGGCAGTGGTAGCAGAGCTGAGGCTCAAAGTTCACCCGGATTGACTAGCGAGCTATTTGCCCCATGTCTTAATTCATGCAGTCCAGGATCTGCGGAAGAAGTTAGTTCCCAGATTATGGCCATAAACAACGAAACAAATAGCGTTAGTCAACCTGATTGGGTTCAACATTGTAATCAGGCAGCGCTGCGAAAACTTAAGGTGCAGCTGAGTCTGGAAGATAGGGAAGATCATGATGTCGATGCCAAAGATATTCCATCAAACAGTGAACCTATCACTGTGTATGGGATTCAGAATGAAGAACCAGGCACTTGTAGAAATCTTGCAGATGTTTTTAGTGGACTGGAGTTCAGCAAAGAAAATCATCCTGAAGAAACCGGACTCCCTTTTTCCAGCACTATTGATGTGCTGAAAAATTCAGACACTTGGTTGGAGGAGGATCAGATTGAAGCAATTCTGCATTCAGCATCTATGATAGTGACTGAAAACCAATGGTTCAATATTCGTGAGGTTTCCCCAGAATGGTCCTATTGTTCTGAAAGTACAAAGGTTATCATTGCAGGAGACTTCCTTCGTGATCCCTCTCATGGTTCATGGGCAATAGTATTTGGCGATGTTAAGGTACATGCAGAAATTGTTCAGCAAGGTGTCATTCGTTGCCATACTCCATGCCTTGATGCTAGAAAAGTGACAATGTACTTGATTGATGAAAATGAGAAAGCCTGCAGTGAAGCACGACAATTCGAATTCCATAATAAGCCTACCAAAAGTGTGGTTTGTGAGAACAGGAAACCCTGCAGAGAAGTACATGAATCTGAACTCCATCAGAGGCCTACTGAAAGCAACAATGAGCTATTGTTGCTTTTTAACTATGCTCAGTTGCTTTTCGATGGTCATGTTTCTGAGCAATTTTTAAAGTTTGGCTTGCCATTCCCAAATCTTGAATGCGGACTCCAAGTTAGCCCATCTGAAATTATGAAGGGGGCATCTGAGCGGCTGAACCGTGACACCGCAGTAAATTGTGTCATGGAAGTACTGCTTAACAACAAGTTTGAAGAGTGGCTGTTTTCTAAATATGAACAAAATAGTGAAGGGAATCATTTTCTCCCTAGGCAATACCATGGTGTTATACATATAATTGCTGCCTTGGGGTACAACTGGGCTTTGAAACTTCTGCTTAATTCAGGTGTACTTGTAAACTACCGTGATGCAAATGGATGGACTGCTTTACATTGGGCTGCACGATTTGGCAGGGAAGAGACGGTAGTGCTCCTTCTTGATGCAGGTGCCGCAGCTGGTGCACTGTCAGACCCAACAGCACAAGATCCTGCTGCCAAAACACCTGCTTCAGTAGCTTCTGCATATGGTTTCAAGGGCCTTTCTGCGTATCTTTCAGAAGCAGAACTAATAGCTCATCTTCATTCTCTCGAATCAAAAGAAAACGGGTCTTCTGGAGATCAAATATCAAGAGTTGTGGGCAGAATATCAGACACATCTGCCCATGCACAAAGTGGTAGCGATGATCAGCTTGCACTGAAGGAATCCCTAGGAGCTATGCGATATGCTGTTCAAGCTGCCGGGCGCATACAAACTGCCTTCCGTATTTTTTCCTTCAGGAAGAAACAACAAGCAGGTCTTCAGAATAGAGGTAACCACATTATATCCATTCGTGAGGTAGGTGCTGCTTCACACGGTATGCTTGAGAAAGCCGCGTTATCTATCCAGAAGAACTTCAGGTGCTGGAAGAAACGCAAAGAATTTCTGAAAATACGCAAAAATGTCATCAAGATACAGGCGCGTGTCAGAGCTCATCAACAACATAACAAGTACAAGGAGTTACTTCGAAGTGTGGGCATCCTTGAGAAGGTCATGCTTAGATGGTACCGAAAGGGTGTTGGTTTACGAGGATTCCACCCTGGGGCAATAGCAATGCCAATCGATGAAGAGGACGAAGATGACGTAGCCAAGGTTTTCCGGAAGCAAAGAGTGGAAACAGCTCTCAACAAAGCTGTTTCAAGGGTATCATCGATCATCGACAGTCCTGTCGCGAGACAGCAATACCGAAGGATGCTCAAAATGCACAAACAAAACAAGGATGATGATGAAAAAGTAGAAGTTTCTCCAGCATCTCATGTTTATGGCAGTGGCAGTCATCACATGTGTTGGCTAAGCCACAACAACAAAGCAATGCACTAGCTGGCCAGTATTGCCATGTCCGACCTTGTTAAATGATCTGACGAGCA-GTTGGCCTTATGAAGAACAGTAAATCCTTGGCGATTCACTGTGCAGCGAATCCTGAAAAACCAGAGGAATTTATCGATGATCCAGTACCATCACTGGTTCTTCTTGCCCTTGCTCTGAAAAAATGTGTTTTACCTTTTGTACATAAGAAAAATCATGTGCAAAGCTGACTCTTGGCCAATATTCAGAA--AAGGTGTACCCTCTTTGCATTTGTTACCCTTGTGTATATGGTAATGAATGTGTGGTGAATCTTTAAAGTGAAGCTTATTGCGAATGAGAGTACCC] [+] EMBL AK122110 [GCTGTGGTTCTCTGACGAAAATGCCACTCACTTTCCCCACACGCGTTCGTCACTCCAAGCTCGATGTCTCTCCCCCGCCGCTTTGGATCAATCGTCAGCGACTCACCATTCGGCGACTCGGCCATTGACAGCGATAGTCGCACGGGTTCTTGCTTATTTGGATCCGTTCTTCCGGGGAGCGAGCTAACCGGGCGAGCGAGATGCAGCACCAGCAAGGATTTGATACACACAGGCTACACCAGGAAGTAAAATCGCGGTGGTTAAAGCCTAAAGAGGTTCTGCAGATATTGCAGAATCATGATCGGTTCATCATCACACATAAGACTCCTCATAAGCCACCGAGTGGTGCTTGGTTTCTTTTCAACCGTAGAGTTCTTCGGTACTTCAGAAATGATGGGTATGAATGGCGAAAAAAGAAGAATGGGAAGACTATTGCTGAAGCCCATGAGCGCCTTAAGGTTGATAATGTTGATGCACTGAATTGCTACTATGCACACGCAGACAAAAACTCTACATTTCAGAGGCGTATATATTGGATGCTTGATCCGGCTTATGATCACATAGTTTTTGTCCACTACAGAGATGTTCAAGAGGGCAGCATTTCAGTATCAGCACTGAATGATTCATCAACATCCAATCAGAATGGCAGTGGTAGCAGAGCTGAGGCTCAAAGTTCACCCGGATTGACTAGCGAGCTATTTGCCCCATGTCTTAATTCATGCAGTCCAGGATCTGCGGAAGAAGTTAGTTCCCAGATTATGGCCATAAACAACGAAACAAATAGCGTTAGTCAACCTGATTGGGTTCAACATTGTAATCAGGCAGCGCTGCGAAAACTTAAGGTGCAGCTGAGTCTGGAAGATAGGGAAGATCATGATGTCGATGCCAAAGATATTCCATCAAACAGTGAACCTATCACTGTGTATGGGATTCAGAATGAAGAACCAGGCACTTGTAGAAATCTTGCAGATGTTTTTAGTGGACTGGAGTTCAGCAAAGAAAATCATCCTGAAGAAACCGGACTCCCTTTTTCCAGCACTATTGATGTGCTGAAAAATTCAGACACTTGGTTGGAGGAGGATCAGATTGAAGCAATTCTGCATTCAGCATCTATGATAGTGACTGAAAACCAATGGTTCAATATTCGTGAGGTTTCCCCAGAATGGTCCTATTGTTCTGAAAGTACAAAGGTTATCATTGCAGGAGACTTCCTTCGTGATCCCTCTCATGGTTCATGGGCAATAGTATTTGGCGATGTTAAGGTACATGCAGAAATTGTTCAGCAAGGTGTCATTCGTTGCCATACTCCATGCCTTGATGCTAGAAAAGTGACAATGTACTTGATTGATGAAAATGAGAAAGCCTGCAGTGAAGCACGACAATTCGAATTCCATAATAAGCCTACCAAAAGTGTGGTTTGTGAGAACAGGAAACCCTGCAGAGAAGTACATGAATCTGAACTCCATCAGAGGCCTACTGAAAGCAACAATGAGCTATTGTTGCTTTTTAACTATGCTCAGTTGCTTTTCGATGGTCATGTTTCTGAGCAATTTTTAAAGTTTGGCTTGCCATTCCCAAATCTTGAATGCGGACTCCAAGTTAGCCCATCTGAAATTATGAAGGGGGCATCTGAGCGGCTGAACCGTGACACCGCAGTAAATTGTGTCATGGAAGTACTGCTTAACAACAAGTTTGAAGAGTGGCTGTTTTCTAAATATGAACAAAATAGTGAAGGGAATCATTTTCTCCCTAGGCAATACCATGGTGTTATACATATAATTGCTGCCTTGGGGTACAACTGGGCTTTGAAACTTCTGCTTAATTCAGGTGTACTTGTAAACTACCGTGATGCAAATGGATGGACTGCTTTACATTGGGCTGCACGATTTGGCAGGGAAGAGACGGTAGTGCTCCTTCTTGATGCAGGTGCCGCAGCTGGTGCACTGTCAGACCCAACAGCACAAGATCCTGCTGCCAAAACACCTGCTTCAGTAGCTTCTGCATATGGTTTCAAGGGCCTTTCTGCGTATCTTTCAGAAGCAGAACTAATAGCTCATCTTCATTCTCTCGAATCAAAAGAAAACGGGTCTTCTGGAGATCAAATATCAAGAGTTGTGGGCAGAATATCAGACACATCTGCCCATGCACAAAGTGGTAGCGATGATCAGCTTGCACTGAAGGAATCCCTAGGAGCTATGCGATATGCTGTTCAAGCTGCCGGGCGCATACAAACTGCCTTCCGTATTTTTTCCTTCAGGAAGAAACAACAAGCAGGTCTTCAGAATAGAGGTAACCACATTATATCCATTCGTGAGGTAGGTGCTGCTTCACACGGTATGCTTGAGAAAGCCGCGTTATCTATCCAGAAGAACTTCAGGTGCTGGAAGAAACGCAAAGAATTTCTGAAAATACGCAAAAATGTCATCAAGATACAGGCGCGTGTCAGAGCTCATCAACAACATAACAAGTACAAGGAGTTACTTCGAAGTGTGGGCATCCTTGAGAAGGTCATGCTTAGATGGTACCGAAAGGGTGTTGGTTTACGAGGATTCCACCCTGGGGCAATAGCAATGCCAATCGATGAAGAGGACGAAGATGACGTAGCCAAGGTTTTCCGGAAGCAAAGAGTGGAAACAGCTCTCAACAAAGCTGTTTCAAGGGTATCATCGATCATCGACAGTCCTGTCGCGAGACAGCAATACCGAAGGATGCTCAAAATGCACAAACAAAACAAG ] [+] EMBL AK068932 [ TGCCACTCACTTTCCCCACACGCGTTCGTCACTCCAAGCTCGATGTCTCTCCCCCGCCGCTTTGGATCAATCGTCAGCGACTCACCATTCGGCGACTCGGCCATTGACAGCGATAGTCGCACGGGTTCTTGCTTATTTGGATCCGTTCTTCCGGGGAGCGAGCTAACCGGGCGAGCGAGATGCAGCACCAGCAAGGATTTGATACACACAGGCTACACCAGGAAGTAAAATCGCGGTGGTTAAAGCCTAAAGAGGTTCTGCAGATATTGCAGAATCATGATCGGTTCATCATCACACATAAGACTCCTCATAAGCCACCGAGTGGTGCTTGGTTTCTTTTCAACCGTAGAGTTCTTCGGTACTTCAGAAATGATGGGTATGAATGGCGAAAAAAGAAGAATGGGAAGACTATTGCTGAAGCCCATGAGCGCCTTAAGGTTGATAATGTTGATGCACTGAATTGCTACTATGCACACGCAGACAAAAACTCTACATTTCAGAGGCGTATATATTGGATGCTTGATCCGGCTTATGATCACATAGTTTTTGTCCACTACAGAGATGTTCAAGAGGGCAGCATTTCAGTATCAGCACTGAATGATTCATCAACATCCAATCAGAATGGCAGTGGTAGCAGAGCTGAGGCTCAAAGTTCACCCGGATTGACTAGCGAGCTATTTGCCCCATGTCTTAATTCATGCAGTCCAGGATCTGCGGAAGAAGTTAGTTCCCAGATTATGGCCATAAACAACGAAACAAATAGCGTTAGTCAACCTGATTGGGTTCAACATTGTAATCAGGCAGCGCTGCGAAAACTTAAGGTGCAGCTGAGTCTGGAAGATAGGGAAGATCATGATGTCGATGCCAAAGATATTCCATCAAACAGTGAACCTATCACTGTGTATGGGATTCAGAATGAAGAGCCAGGCACTTGTAGAAATCTTGCAGATGTTTTTAGTGGACTGGAGTTCAGCAAAGAAAATCATCCTGAAGAAACCGGACTCCCTTTTTCCAGCACTATTGATGTGCTGAAAAATTCAGACACTTGGTTGGAGGAGGATCAGATTGAAGCAATTCTGCATTCAGCATCTATGATAGTGACTGAAAACCAATGGTTCAATATTCGTGAGGTTTCCCCAGAATGGTCCTATTGTTCTGAAAGTACAAAGGTTATCATTGCAGGAGACTTCCTTCGTGATCCCTCTCATGGTTCATGGGCAATAGTATTTGGCGATGTTAAGGTACATGCAGAAATTGTTCAGCAAGGTGTCATTCGTTGCCATACTCCATGCCTTGATGCTAGAAAAGTGACAATGTACTTGATTGATGAAAATGAGAAAGCCTGCAGTGAAGCACGACAATTCGAATTCCATAATAAGCCTACCAAAAGTGTGGTTTGTGAGAACAGGAAACCCTGCAGAGAAGTACATGAATCTGAACTCCATCAGAGGCCTACTGAAAGCAACAATGAGCTATTGTTGCTTTTTAACTATGCTCAGTTGCTTTTCGATGGTCATGTTTCTGAGCAATTTTTAAAGTTTGGCTTGCCATTCCCAAATCTTGAATGCGGACTCCAAGTTAGCCCATCTGAAATTATGAAGGGGGCATCTGAGCGGCTGAACCGTGACACCGCAGTAAATTGTGTCATGGAAGTACTGCTTAACAACAAGTTTGAAGAGTGGCTGTTTTCTAAATATGAACAAAATAGTGAAGGGAATCATTTTCTCCCTAGGCAATACCATGGTGTTATACATACAATTGCTGCCTTGGGGTACAACTGGGCTTTGAAACTTCTGCTTAATTCAGGTGTACTTGTAAACTACCGTGATGCAAATGGATGGACTGCTTTACATTGGGCTGCACGATTTGGCAGGGAAGAGACGGTAGTGCTCCTTCTTGATGCAGGTGCCGCAGCTGGTGCACTGTCAGACCCAACAGCACAAGATCCTGCTGCCAAAACACCTGCTTCAGTAGCTTCTGCATATGGTTTCAAGGGCCTTTCTGCGTATCTTTCAGAAGCAGAACTAATAGCTCATCTTCATTCTCTCGAATCAAAAGAAAACGGGTCTTCTGGAGATCAAATATCAAGAGTTGTGGGCAGAATATCAGACACATCTGCCCATGCACAAAGTGGTAGCGATGATCAGCTTGCACTGAAGGAATCCCTAGGAGCTATGCGATATGCTGTTCAAGCTGCCGGGCGCATACAAACTGCCTTCCGTATTTTTTCCTTCAGGAAGAAACAACAAGCAGGTCTTCAGAATAGAGGTAACCACATTATATCCATTCGTGAGGTAGGTGCTGCTTCACACGGTATGCTTGAGAAAGCCGCGTTATCTATCCAGAAGAACTTCAGGTGCTGGAAGAAACGCAAAGAATTTCTGAAAATACGCAAAAATGTCATCAAGATACAGGCGCGTGTCAGAGCTCATCAACAACATAACAAGTACAAGGAGTTACTTCGAAGTGTGGGCATCCTTGAGAAGGTCATGCTTAGATGGTACCGAAAGGGTGTTGGTTTACGAGGATTCCACCCTGGGGCAATAGCAATGCCAATCGATGAAGAGGACGAAGATGACGTAGCCAAGGTTTTCCGGAAGCAAAGAGTGGAAACAGCTCTCAACAAAGCTGTTTCAAGGGTATCATCGATCATCGACAGTCCTGTCGCGAGACAGCAATACCGAAGGATGCTCAAAATGCACAAACAAAACAAGGATGATGATGAAAAAGTAGAAGTTTCTCCAGCATCTCATGTTTATGGCAGTGGCAGTCATCACATGTGTTGGCTAAGCCACAACAACAAAGCAATGCACTAGCTGGCCAGTATTGCCATGTCCGACCTTGTTAAATGATCTGACGAGCA GTTGGCCTTATGAAGAACAGTAAATCCTTGGCGATTCACTGTGCAGCGAATCCTGAAAAACCAGAGGAATTTATCGATGATCCAGTACCATCACTGGTTCTTCTTGCCCTTGCTCTGAAAAAATGTGTTTTACCTTTTGTACATAAGAAAAATCATGTGCAAAGCTGACTCTTGGCCAATATTCAGAA AAGGTGTACCCTCTTTGCATTTGTTACCCTTGTGTATATGGTAATGAATGTGTGGTGAATCTTTAAAGTGAAGCTTATTGCGAATGAGAGTACCC] [+] EMBL BM419270 [ ATGTGTTGGCTAAGCCACAACAAC AAGCAATGCACTAGCTGGCCAGTATTGCCATGTCCGACCTTGTTAAATGATCTGACGAGCACGTTGGCCTTATGAAGAACAGTAAATCCTTGGCGATTCACTGTGCAGCGAATCCTGAAAAACCAGAGGAATTTATCGATGATCCAGTACCATCACTGGTTCTTCTTGCCCTTGCTCTGAAAAAATGTGTTTTACCTTTTGTACATAAGAAAAATCATGTGCAAAGCTGACTCTTGGCCAATATTCAGAANCCNGGTGTACCCTCTTTGCATTTGTTAaaaaa ] consensusID : consensus_7887#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1584 fasta sequence [CAATTTTTAAAGTTTGGCTTGCCATTCCCAAATCTTGAATGCGGACTCCAAGTTAGCCCATCTGAAATTATGAAGGGGGCATCTGAGCGGCTGAACCGTGACACCGCAGTAAATTGTGTCATGGAAGTACTGCTTAACAACAAGTTTGAAGAGTGGCTGTTTTCTAAATATGAACAAAATAGTGAAGGGAATCATTTTCTCCCTAGGCAATACCATGGTGTTATACATACAATTGCTGCCTTGGGGTACAACTGGGCTTTGAAACTTCTGCTTAATTCAGGTGTACTTGTAAACTACCGTGATGCAAATGGATGGACTGCTTTACATTGGGCTGCACGATTTGGCAGGGAAGAGACGGTAGTGCTCCTTCTTGATGCAGGTGCCGCAGCTGGTGTACTGTCAGACCCAACAGCACAAGATCCTGCTGCCAAAACACCTGCTTCAGTAGCTTCTGCATATGGTTTCAAGGGCCTTTCTGCGTATCTTTCAGAAGCAGAACTAATAGCTCATCTTCATTCTCTCGAATCAAAAGAAAACGGGTCTTCTGGAGATCAAATATCAAGAGTTGTGGGCAGAATATCAGACACATCTGCCCATGCACAAAGTGGTAGCGATGATCAGCTTGCACTGAAGGAATCCCTAGGAGCTATGCGATATGCTGTTCAAGCTGCCGGGCGCATACAAACTGCCTTCCGTATTTTTTCCTTCAGGAAGAAACAACAAGCAGGTCTTCAGAATAGAGGTAACCACATTATATCCATTCGTGAGGTAGGTGCTGCTTCACACGGTATGCTTGAGAAAGCCGCGTTATCTATCCAGAAGAACTTCAGGTGCTGGAAGAAACGCAAAGAATTTCTGAAAATACGCAAAAATGTCATCAAGATACAGGCGCGTGTCAGAGCTCATCAACAACATAACAAGTACAAGGAGTTACTTCGAAGTGTGGGCATCCTTGAGAAGGTCATGCTTAGATGGTACCGAAAGGGTGTTGGTTTACGAGGATTCCACCCTGGGGCAATAGCAATGCCAATCGATGAAGAGGACGAAGATGACGTAGCCAAGGTTTTCCGGAAGCAAAGAGTGGAAACAGCTCTCAACAAAGCTGTTTCAAGGGTATCATCGATCATCGACAGTCCTGTCGCGAGACAGCAATACCGAAGGATGCTCAAAATGCACAAACAAAACAAGGATGATGATGAAAAGTAGGACTGAAATGTTCCTTTTTCCAATCACAGGATGATGATGAAAAAGTAGAAGTTTCTCCAGCATCTCATGTTTATGGCAGTGGCAGTCATCACATGTGTTGGCTAAGCCACAACAACAAAGCAATGCACTAGCTGGCCAGTATTGCCATGTCCGACCTTGTTAAATGATCTGACGAGCAGTTGGCCTTATGAAGAACAGTAAATCCTTGGCGATTCACTGTGCAGCGAATCCTGAAAAACCAGAGGAATTTATCGATGATCCAGTACCATCACTGGTTCTTCTTGCCCTTGCTCTGAAAAAATGTGTTTTACCTTTTGTACATAAGAAAAATCATGTGCAAAGCTGACTCTTGGCCAATATTCAGAAAAGGTGTACCCT] [+] EMBL AK059687 [CAATTTTTAAAGTTTGGCTTGCCATTCCCAAATCTTGAATGCGGACTCCAAGTTAGCCCATCTGAAATTATGAAGGGGGCATCTGAGCGGCTGAACCGTGACACCGCAGTAAATTGTGTCATGGAAGTACTGCTTAACAACAAGTTTGAAGAGTGGCTGTTTTCTAAATATGAACAAAATAGTGAAGGGAATCATTTTCTCCCTAGGCAATACCATGGTGTTATACATACAATTGCTGCCTTGGGGTACAACTGGGCTTTGAAACTTCTGCTTAATTCAGGTGTACTTGTAAACTACCGTGATGCAAATGGATGGACTGCTTTACATTGGGCTGCACGATTTGGCAGGGAAGAGACGGTAGTGCTCCTTCTTGATGCAGGTGCCGCAGCTGGTGTACTGTCAGACCCAACAGCACAAGATCCTGCTGCCAAAACACCTGCTTCAGTAGCTTCTGCATATGGTTTCAAGGGCCTTTCTGCGTATCTTTCAGAAGCAGAACTAATAGCTCATCTTCATTCTCTCGAATCAAAAGAAAACGGGTCTTCTGGAGATCAAATATCAAGAGTTGTGGGCAGAATATCAGACACATCTGCCCATGCACAAAGTGGTAGCGATGATCAGCTTGCACTGAAGGAATCCCTAGGAGCTATGCGATATGCTGTTCAAGCTGCCGGGCGCATACAAACTGCCTTCCGTATTTTTTCCTTCAGGAAGAAACAACAAGCAGGTCTTCAGAATAGAGGTAACCACATTATATCCATTCGTGAGGTAGGTGCTGCTTCACACGGTATGCTTGAGAAAGCCGCGTTATCTATCCAGAAGAACTTCAGGTGCTGGAAGAAACGCAAAGAATTTCTGAAAATACGCAAAAATGTCATCAAGATACAGGCGCGTGTCAGAGCTCATCAACAACATAACAAGTACAAGGAGTTACTTCGAAGTGTGGGCATCCTTGAGAAGGTCATGCTTAGATGGTACCGAAAGGGTGTTGGTTTACGAGGATTCCACCCTGGGGCAATAGCAATGCCAATCGATGAAGAGGACGAAGATGACGTAGCCAAGGTTTTCCGGAAGCAAAGAGTGGAAACAGCTCTCAACAAAGCTGTTTCAAGGGTATCATCGATCATCGACAGTCCTGTCGCGAGACAGCAATACCGAAGGATGCTCAAAATGCACAAACAAAACAAGGATGATGATGAAAAGTAGGACTGAAATGTTCCTTTTTCCAATCACAGGATGATGATGAAAAAGTAGAAGTTTCTCCAGCATCTCATGTTTATGGCAGTGGCAGTCATCACATGTGTTGGCTAAGCCACAACAACAAAGCAATGCACTAGCTGGCCAGTATTGCCATGTCCGACCTTGTTAAATGATCTGACGAGCAGTTGGCCTTATGAAGAACAGTAAATCCTTGGCGATTCACTGTGCAGCGAATCCTGAAAAACCAGAGGAATTTATCGATGATCCAGTACCATCACTGGTTCTTCTTGCCCTTGCTCTGAAAAAATGTGTTTTACCTTTTGTACATAAGAAAAATCATGTGCAAAGCTGACTCTTGGCCAATATTCAGAAAAGGTGTACCCT] consensusID : consensus_7887#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 602 fasta sequence [AGAGCCGAAGATGACATACCAGGGTTTCCGAAACCAAGAGGGAACACGCTCTCTACCGAACTGGTTTCAAAGGGTATTCATCGATCATCGACCAGTCCTTCGCGAGAACAGCTATTCCCGNAGGATGCCTCGAAATGCACAACAACCAAGGATGATGATGAAAAGTAGAAGACTGATAATGGTNCCGTGTGTCNCCATCACACGGATGGATGATGAAAAAGTAGAAGTTTCTCCAGCATCTCATGTTTATGNCAGTGCAGTCATCACATGTGTTGGCTAAGCCACAACCACAAGCNATGCACCTAGCTGGCCAGTATTGCCATGTCCGACCGTGTGTAAATGATCNGACGACCAGTTGGCCTTATGAAGAACAGTAAATCCTTGGGCGATTCACTGTGGCAGCGAATCCTGAAACCAGAGGATTTATCGATGATCCNGTACCATCACTGGTTCTTCTTCCCTTGCTCTGAAAAAATGTGTTTTACCTTNTGTACATAAGAAAATCATGTGCAAGCTGACTCTTGCCAATATTCAGAAAAGGGGTACCCTCGTGCATTTGTTACCCTTGTGTATATGTAATGAATGTGTGGTGAATCTTTAAA] [+] EMBL BI806015 [AGAGCCGAAGATGACATACCAGGGTTTCCGAAACCAAGAGGGAACACGCTCTCTACCGAACTGGTTTCAAAGGGTATTCATCGATCATCGACCAGTCCTTCGCGAGAACAGCTATTCCCGNAGGATGCCTCGAAATGCACAACAACCAAGGATGATGATGAAAAGTAGAAGACTGATAATGGTNCCGTGTGTCNCCATCACACGGATGGATGATGAAAAAGTAGAAGTTTCTCCAGCATCTCATGTTTATGNCAGTGCAGTCATCACATGTGTTGGCTAAGCCACAACCACAAGCNATGCACCTAGCTGGCCAGTATTGCCATGTCCGACCGTGTGTAAATGATCNGACGACCAGTTGGCCTTATGAAGAACAGTAAATCCTTGGGCGATTCACTGTGGCAGCGAATCCTGAAACCAGAGGATTTATCGATGATCCNGTACCATCACTGGTTCTTCTTCCCTTGCTCTGAAAAAATGTGTTTTACCTTNTGTACATAAGAAAATCATGTGCAAGCTGACTCTTGCCAATATTCAGAAAAGGGGTACCCTCGTGCATTTGTTACCCTTGTGTATATGTAATGAATGTGTGGTGAATCTTTAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7887#0 GCTGTGGTTCTCTGACGAAAATGCCACTCACTTTCCCCACACGCGTTCGTCACTCCAAGC 60 consensus_7887#1 ------------------------------------------------------------ consensus_7887#2 ------------------------------------------------------------ consensus_7887#0 TCGATGTCTCTCCCCCGCCGCTTTGGATCAATCGTCAGCGACTCACCATTCGGCGACTCG 120 consensus_7887#1 ------------------------------------------------------------ consensus_7887#2 ------------------------------------------------------------ consensus_7887#0 GCCATTGACAGCGATAGTCGCACGGGTTCTTGCTTATTTGGATCCGTTCTTCCGGGGAGC 180 consensus_7887#1 ------------------------------------------------------------ consensus_7887#2 ------------------------------------------------------------ consensus_7887#0 GAGCTAACCGGGCGAGCGAGATGCAGCACCAGCAAGGATTTGATACACACAGGCTACACC 240 consensus_7887#1 ------------------------------------------------------------ consensus_7887#2 ------------------------------------------------------------ consensus_7887#0 AGGAAGTAAAATCGCGGTGGTTAAAGCCTAAAGAGGTTCTGCAGATATTGCAGAATCATG 300 consensus_7887#1 ------------------------------------------------------------ consensus_7887#2 ------------------------------------------------------------ consensus_7887#0 ATCGGTTCATCATCACACATAAGACTCCTCATAAGCCACCGAGTGGTGCTTGGTTTCTTT 360 consensus_7887#1 ------------------------------------------------------------ consensus_7887#2 ------------------------------------------------------------ consensus_7887#0 TCAACCGTAGAGTTCTTCGGTACTTCAGAAATGATGGGTATGAATGGCGAAAAAAGAAGA 420 consensus_7887#1 ------------------------------------------------------------ consensus_7887#2 ------------------------------------------------------------ consensus_7887#0 ATGGGAAGACTATTGCTGAAGCCCATGAGCGCCTTAAGGTTGATAATGTTGATGCACTGA 480 consensus_7887#1 ------------------------------------------------------------ consensus_7887#2 ------------------------------------------------------------ consensus_7887#0 ATTGCTACTATGCACACGCAGACAAAAACTCTACATTTCAGAGGCGTATATATTGGATGC 540 consensus_7887#1 ------------------------------------------------------------ consensus_7887#2 ------------------------------------------------------------ consensus_7887#0 TTGATCCGGCTTATGATCACATAGTTTTTGTCCACTACAGAGATGTTCAAGAGGGCAGCA 600 consensus_7887#1 ------------------------------------------------------------ consensus_7887#2 ------------------------------------------------------------ consensus_7887#0 TTTCAGTATCAGCACTGAATGATTCATCAACATCCAATCAGAATGGCAGTGGTAGCAGAG 660 consensus_7887#1 ------------------------------------------------------------ consensus_7887#2 ------------------------------------------------------------ consensus_7887#0 CTGAGGCTCAAAGTTCACCCGGATTGACTAGCGAGCTATTTGCCCCATGTCTTAATTCAT 720 consensus_7887#1 ------------------------------------------------------------ consensus_7887#2 ------------------------------------------------------------ consensus_7887#0 GCAGTCCAGGATCTGCGGAAGAAGTTAGTTCCCAGATTATGGCCATAAACAACGAAACAA 780 consensus_7887#1 ------------------------------------------------------------ consensus_7887#2 ------------------------------------------------------------ consensus_7887#0 ATAGCGTTAGTCAACCTGATTGGGTTCAACATTGTAATCAGGCAGCGCTGCGAAAACTTA 840 consensus_7887#1 ------------------------------------------------------------ consensus_7887#2 ------------------------------------------------------------ consensus_7887#0 AGGTGCAGCTGAGTCTGGAAGATAGGGAAGATCATGATGTCGATGCCAAAGATATTCCAT 900 consensus_7887#1 ------------------------------------------------------------ consensus_7887#2 ------------------------------------------------------------ consensus_7887#0 CAAACAGTGAACCTATCACTGTGTATGGGATTCAGAATGAAGAACCAGGCACTTGTAGAA 960 consensus_7887#1 ------------------------------------------------------------ consensus_7887#2 ------------------------------------------------------------ consensus_7887#0 ATCTTGCAGATGTTTTTAGTGGACTGGAGTTCAGCAAAGAAAATCATCCTGAAGAAACCG 1020 consensus_7887#1 ------------------------------------------------------------ consensus_7887#2 ------------------------------------------------------------ consensus_7887#0 GACTCCCTTTTTCCAGCACTATTGATGTGCTGAAAAATTCAGACACTTGGTTGGAGGAGG 1080 consensus_7887#1 ------------------------------------------------------------ consensus_7887#2 ------------------------------------------------------------ consensus_7887#0 ATCAGATTGAAGCAATTCTGCATTCAGCATCTATGATAGTGACTGAAAACCAATGGTTCA 1140 consensus_7887#1 ------------------------------------------------------------ consensus_7887#2 ------------------------------------------------------------ consensus_7887#0 ATATTCGTGAGGTTTCCCCAGAATGGTCCTATTGTTCTGAAAGTACAAAGGTTATCATTG 1200 consensus_7887#1 ------------------------------------------------------------ consensus_7887#2 ------------------------------------------------------------ consensus_7887#0 CAGGAGACTTCCTTCGTGATCCCTCTCATGGTTCATGGGCAATAGTATTTGGCGATGTTA 1260 consensus_7887#1 ------------------------------------------------------------ consensus_7887#2 ------------------------------------------------------------ consensus_7887#0 AGGTACATGCAGAAATTGTTCAGCAAGGTGTCATTCGTTGCCATACTCCATGCCTTGATG 1320 consensus_7887#1 ------------------------------------------------------------ consensus_7887#2 ------------------------------------------------------------ consensus_7887#0 CTAGAAAAGTGACAATGTACTTGATTGATGAAAATGAGAAAGCCTGCAGTGAAGCACGAC 1380 consensus_7887#1 ------------------------------------------------------------ consensus_7887#2 ------------------------------------------------------------ consensus_7887#0 AATTCGAATTCCATAATAAGCCTACCAAAAGTGTGGTTTGTGAGAACAGGAAACCCTGCA 1440 consensus_7887#1 ------------------------------------------------------------ consensus_7887#2 ------------------------------------------------------------ consensus_7887#0 GAGAAGTACATGAATCTGAACTCCATCAGAGGCCTACTGAAAGCAACAATGAGCTATTGT 1500 consensus_7887#1 ------------------------------------------------------------ consensus_7887#2 ------------------------------------------------------------ consensus_7887#0 TGCTTTTTAACTATGCTCAGTTGCTTTTCGATGGTCATGTTTCTGAGCAATTTTTAAAGT 1560 consensus_7887#1 -----------------------------------------------CAATTTTTAAAGT 13 consensus_7887#2 ------------------------------------------------------------ consensus_7887#0 TTGGCTTGCCATTCCCAAATCTTGAATGCGGACTCCAAGTTAGCCCATCTGAAATTATGA 1620 consensus_7887#1 TTGGCTTGCCATTCCCAAATCTTGAATGCGGACTCCAAGTTAGCCCATCTGAAATTATGA 73 consensus_7887#2 ------------------------------------------------------------ consensus_7887#0 AGGGGGCATCTGAGCGGCTGAACCGTGACACCGCAGTAAATTGTGTCATGGAAGTACTGC 1680 consensus_7887#1 AGGGGGCATCTGAGCGGCTGAACCGTGACACCGCAGTAAATTGTGTCATGGAAGTACTGC 133 consensus_7887#2 ------------------------------------------------------------ consensus_7887#0 TTAACAACAAGTTTGAAGAGTGGCTGTTTTCTAAATATGAACAAAATAGTGAAGGGAATC 1740 consensus_7887#1 TTAACAACAAGTTTGAAGAGTGGCTGTTTTCTAAATATGAACAAAATAGTGAAGGGAATC 193 consensus_7887#2 ------------------------------------------------------------ consensus_7887#0 ATTTTCTCCCTAGGCAATACCATGGTGTTATACATATAATTGCTGCCTTGGGGTACAACT 1800 consensus_7887#1 ATTTTCTCCCTAGGCAATACCATGGTGTTATACATACAATTGCTGCCTTGGGGTACAACT 253 consensus_7887#2 ------------------------------------------------------------ consensus_7887#0 GGGCTTTGAAACTTCTGCTTAATTCAGGTGTACTTGTAAACTACCGTGATGCAAATGGAT 1860 consensus_7887#1 GGGCTTTGAAACTTCTGCTTAATTCAGGTGTACTTGTAAACTACCGTGATGCAAATGGAT 313 consensus_7887#2 ------------------------------------------------------------ consensus_7887#0 GGACTGCTTTACATTGGGCTGCACGATTTGGCAGGGAAGAGACGGTAGTGCTCCTTCTTG 1920 consensus_7887#1 GGACTGCTTTACATTGGGCTGCACGATTTGGCAGGGAAGAGACGGTAGTGCTCCTTCTTG 373 consensus_7887#2 ------------------------------------------------------------ consensus_7887#0 ATGCAGGTGCCGCAGCTGGTGCACTGTCAGACCCAACAGCACAAGATCCTGCTGCCAAAA 1980 consensus_7887#1 ATGCAGGTGCCGCAGCTGGTGTACTGTCAGACCCAACAGCACAAGATCCTGCTGCCAAAA 433 consensus_7887#2 ------------------------------------------------------------ consensus_7887#0 CACCTGCTTCAGTAGCTTCTGCATATGGTTTCAAGGGCCTTTCTGCGTATCTTTCAGAAG 2040 consensus_7887#1 CACCTGCTTCAGTAGCTTCTGCATATGGTTTCAAGGGCCTTTCTGCGTATCTTTCAGAAG 493 consensus_7887#2 ------------------------------------------------------------ consensus_7887#0 CAGAACTAATAGCTCATCTTCATTCTCTCGAATCAAAAGAAAACGGGTCTTCTGGAGATC 2100 consensus_7887#1 CAGAACTAATAGCTCATCTTCATTCTCTCGAATCAAAAGAAAACGGGTCTTCTGGAGATC 553 consensus_7887#2 ------------------------------------------------------------ consensus_7887#0 AAATATCAAGAGTTGTGGGCAGAATATCAGACACATCTGCCCATGCACAAAGTGGTAGCG 2160 consensus_7887#1 AAATATCAAGAGTTGTGGGCAGAATATCAGACACATCTGCCCATGCACAAAGTGGTAGCG 613 consensus_7887#2 ------------------------------------------------------------ consensus_7887#0 ATGATCAGCTTGCACTGAAGGAATCCCTAGGAGCTATGCGATATGCTGTTCAAGCTGCCG 2220 consensus_7887#1 ATGATCAGCTTGCACTGAAGGAATCCCTAGGAGCTATGCGATATGCTGTTCAAGCTGCCG 673 consensus_7887#2 ------------------------------------------------------------ consensus_7887#0 GGCGCATACAAACTGCCTTCCGTATTTTTTCCTTCAGGAAGAAACAACAAGCAGGTCTTC 2280 consensus_7887#1 GGCGCATACAAACTGCCTTCCGTATTTTTTCCTTCAGGAAGAAACAACAAGCAGGTCTTC 733 consensus_7887#2 ------------------------------------------------------------ consensus_7887#0 AGAATAGAGGTAACCACATTATATCCATTCGTGAGGTAGGTGCTGCTTCACACGGTATGC 2340 consensus_7887#1 AGAATAGAGGTAACCACATTATATCCATTCGTGAGGTAGGTGCTGCTTCACACGGTATGC 793 consensus_7887#2 ------------------------------------------------------------ consensus_7887#0 TTGAGAAAGCCGCGTTATCTATCCAGAAGAACTTCAGGTGCTGGAAGAAACGCAAAGAAT 2400 consensus_7887#1 TTGAGAAAGCCGCGTTATCTATCCAGAAGAACTTCAGGTGCTGGAAGAAACGCAAAGAAT 853 consensus_7887#2 ------------------------------------------------------------ consensus_7887#0 TTCTGAAAATACGCAAAAATGTCATCAAGATACAGGCGCGTGTCAGAGCTCATCAACAAC 2460 consensus_7887#1 TTCTGAAAATACGCAAAAATGTCATCAAGATACAGGCGCGTGTCAGAGCTCATCAACAAC 913 consensus_7887#2 ------------------------------------------------------------ consensus_7887#0 ATAACAAGTACAAGGAGTTACTTCGAAGTGTGGGCATCCTTGAGAAGGTCATGCTTAGAT 2520 consensus_7887#1 ATAACAAGTACAAGGAGTTACTTCGAAGTGTGGGCATCCTTGAGAAGGTCATGCTTAGAT 973 consensus_7887#2 ------------------------------------------------------------ consensus_7887#0 GGTACCGAAAGGGTGTTGGTTTACGAGGATTCCACCCTGGGGCAATAGCAATGCCAATCG 2580 consensus_7887#1 GGTACCGAAAGGGTGTTGGTTTACGAGGATTCCACCCTGGGGCAATAGCAATGCCAATCG 1033 consensus_7887#2 ------------------------------------------------------------ consensus_7887#0 ATGAAGAGGACGAAGATGACGTAGCCAAGGTTTTCCGGAAGCAAAGAGTGGAAACAGCTC 2640 consensus_7887#1 ATGAAGAGGACGAAGATGACGTAGCCAAGGTTTTCCGGAAGCAAAGAGTGGAAACAGCTC 1093 consensus_7887#2 -----AGAGCCGAAGATGACATA-CCAGGGTTTCC--GAAACCAAGAGGGAACAC-GCTC 51 * ********** ** *** ***** * *** * ***** * * ** **** consensus_7887#0 TCAACAAAGCTGTTTC--AAGGGTAT-CATCGATCATCGACAGTCCTGTCGCGAGA-CAG 2696 consensus_7887#1 TCAACAAAGCTGTTTC--AAGGGTAT-CATCGATCATCGACAGTCCTGTCGCGAGA-CAG 1149 consensus_7887#2 TCTACCGAACTGGTTTCAAAGGGTATTCATCGATCATCGACCAGTCCTTCGCGAGAACAG 111 ** ** * *** ** ******** ************** * ******** *** consensus_7887#0 CAATACC-GAAGGATGC-TCAAAATGCACAAACAAAACAAGGATGATGATGAAAA----- 2749 consensus_7887#1 CAATACC-GAAGGATGC-TCAAAATGCACAAACAAAACAAGGATGATGATGAAAAGTAGG 1207 consensus_7887#2 CTATTCCCGNAGGATGCCTCGAAATGCACAAC--AACCAAGGATGATGATGAAAAGTAGA 169 * ** ** * ******* ** ********** ** ****************** consensus_7887#0 --------------------------------------------------AGTAGAAGTT 2759 consensus_7887#1 AC--------TGAAATGTTCCTTTTTCCAATCACAGGATGATGATGAAAAAGTAGAAGTT 1259 consensus_7887#2 AGACTGATAATGGTNCCGTGTGTCNCCATCACACGGATGGATGATGAAAAAGTAGAAGTT 229 ********** consensus_7887#0 TCTCCAGCATCTCATGTTTATGGCAGTGGCAGTCATCACATGTGTTGGCTAAGCCACAAC 2819 consensus_7887#1 TCTCCAGCATCTCATGTTTATGGCAGTGGCAGTCATCACATGTGTTGGCTAAGCCACAAC 1319 consensus_7887#2 TCTCCAGCATCTCATGTTTATGNCAGTG-CAGTCATCACATGTGTTGGCTAAGCCACAAC 288 ********************** ***** ******************************* consensus_7887#0 AACAAAGCAATGCAC-TAGCTGGCCAGTATTGCCATGTCCGACCTTGT-TAAATGATCTG 2877 consensus_7887#1 AACAAAGCAATGCAC-TAGCTGGCCAGTATTGCCATGTCCGACCTTGT-TAAATGATCTG 1377 consensus_7887#2 CACAA-GCNATGCACCTAGCTGGCCAGTATTGCCATGTCCGACCGTGTGTAAATGATCNG 347 **** ** ****** **************************** *** ********* * consensus_7887#0 ACGAGCAGTTGGCCTTATGAAGAACAGTAAATCCTTGG-CGATTCACTGTG-CAGCGAAT 2935 consensus_7887#1 ACGAGCAGTTGGCCTTATGAAGAACAGTAAATCCTTGG-CGATTCACTGTG-CAGCGAAT 1435 consensus_7887#2 ACGACCAGTTGGCCTTATGAAGAACAGTAAATCCTTGGGCGATTCACTGTGGCAGCGAAT 407 **** ********************************* ************ ******** consensus_7887#0 CCTGAAAAACCAGAGGAATTTATCGATGATCCAGTACCATCACTGGTTCTTCTTGCCCTT 2995 consensus_7887#1 CCTGAAAAACCAGAGGAATTTATCGATGATCCAGTACCATCACTGGTTCTTCTTGCCCTT 1495 consensus_7887#2 CCTGAA--ACCAGAGGA-TTTATCGATGATCCNGTACCATCACTGGTTCTTCTT-CCCTT 463 ****** ********* ************** ********************* ***** consensus_7887#0 GCTCTGAAAAAATGTGTTTTACCTTTTGTACATAAGAAAAATCATGTGCAAAGCTGACTC 3055 consensus_7887#1 GCTCTGAAAAAATGTGTTTTACCTTTTGTACATAAGAAAAATCATGTGCAAAGCTGACTC 1555 consensus_7887#2 GCTCTGAAAAAATGTGTTTTACCTTNTGTACATAAGAAAA-TCATGTGCAA-GCTGACTC 521 ************************* ************** ********** ******** consensus_7887#0 TTGGCCAATATTCAGAAAAGGTGTACCCTCTTTGCATTTGTTACCCTTGTGTATATGGTA 3115 consensus_7887#1 TTGGCCAATATTCAGAAAAGGTGTACCCT------------------------------- 1584 consensus_7887#2 TTG-CCAATATTCAGAAAAGGGGTACCCTCGT-GCATTTGTTACCCTTGTGTATATG-TA 578 *** ***************** ******* consensus_7887#0 ATGAATGTGTGGTGAATCTTTAAAGTGAAGCTTATTGCGAATGAGAGTACCC 3167 consensus_7887#1 ---------------------------------------------------- consensus_7887#2 ATGAATGTGTGGTGAATCTTTAAA---------------------------- 602 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||