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Oryza sativa
cluster # 7889 cluster # 7889       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7889#0 length = 879 sequences # 3  
consensus_7889#1 length = 482 sequences # 2  

consensusID : consensus_7889#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 879
fasta sequence
                              [TAAGCGAAAAGATGAGACTCTTGAATTTGCCCCCTTAACGTACACTGGTTAGCAACTGCTCTTTCCGTCTCAATATAAATGTTATATCTACATTAGGTTATATTTATATTGAGATGGAAGGAGTACTACCTGAATCCAAACTCTGATTGATCTCTTCCGTTTTTGATAATACGCAATCGGAGCAGGAGAGAGGTTTTGGATTATGGATAGTACTGGAATGCGGTGATTAGGATGGAAGAAGCATTCTGGACGATACAGGATCGGACATCTGGGCACGATTACTCCTCCTGGAAGTAAAAACCAGCCGTCACGGCCGATAGTGACGCTCGTTGTCGTTGGCAGGTGCATTACATAGGCTGAAATGTTTGGTACCCCATTACATATTAGTCTTGATGATTCAATATACTTTTGCAGGTTGGCACCGTTTTTTACTTGACGCTCTTAGCATCTCCCTCGGAGAAACTTT--CCCGCCTCCCAGCGGCAAAGCCTCAA-CGCTCGAGCTGATTCATGTTGGCTGGAGTACTGTTTTGGTTGTCCCAATGGTTGGCGCTTCACTTATCGTGCAGCAATTTGGCAAAGCTCCAATTCTCTTTTTTCTTCAGGTGAGATCTAGCCATTCAAGCTTGAATTCTCCTTTTCCATCTCAACTATACAAGCTAATCTATCATGCACCTCCGAAAGTTTACTTGGCGTTTCATGTT-TGAACTTCTCTTGATACCATTCTCGGGGTATACCAGCTTCATCACGAGCTGGGTAGTTAAA-TGGACCCTTCAGCACCACATCATGCTCCTTTATTAAG-TCTCTAAAAGTTGCATCTGGGACACGACCCATCATTTGGCATACTTTTAGGAACCAATGCAGACCTACAGAGGCATGTGC]

[+] EMBL CB659772             [TAAGCGAAAAGATGAGACTCTTGAATTTGCCCCCTTAACGTACACTGGTTAGCAACTGCTCTTTCCGTCTCAATATAAATGTTATATCTACATTAGGTTATATTTATATTGAGATGGAAGGAGTACTACCTGAATCCAAACTCTGATTGATCTCTTCCGTTTTTGATAATACGCAATCGGAGCAGGAGAGAGGTTTTGGATTATGGATAGTACTGGAATGCGGTGATTAGGATGGAAGAAGCATTCTGGACGATACAGGATCGGACATCTGGGCACGATTACTCCTCCTGGAAGTAAAAACCAGCCGTCACGGCCGATAGTGACGCTCGTTGTCGTTGGCAGGTGCATTACATAGGCTGAAATGTTTGGTACCCCATTACATATTAGTCTTGATGATTCAATATACTTTTGCAGGTTGGCACCGTTTTTTACTTGACGCTCTTAGCATCTCCCTCGGAGAAACTTT  CCCGCCTCCCAGCGGCAAAGCCTCAA CGCTCGAGCTGATTCATGTTGGCTGGAGTACTGTTTTGGTTGTCCCAATGGTTGGCGCTTCACTTATCGTGCAGCAATTTGGCAAAGCTCCAATTCTCTTTTTTCTTCAGGTGAGATCTAGCCATTCAAGCTTGAATTCTCCTTTTCCATCTCAACTATACAAGCTAATCTATCATGCACCTCCGAAAGTTTACTTGGCGTTTCATGTT TGAACTTCTCTTGATACCATTCTCGGGGTATACCAGCTTCATCACGAGCTGGGTAGTTAAA TGGACCCTTCAGCACCACATCATGCTCCTTTATTAAG TCTCTAAAAGTTGCATCTGGGACACGACCCATCATT                                            ]
[-] EMBL CB659773             [                                                                                                        TATATTGAGATGGAAGGAGTACTACCTGAATCCAAACTCTGATTGATCTCTTCCGTTTTTGATAATACGCAATCGGAGCAGGAGAGAGGTTTTGGATTATGGATAGTACTGGAATGCGGTGATTAGGATGGAAGAAGCATTCTGGACGATACAGGATCGGACATCTGGGCACGATTACTCCTCCTGGAAGTAAAAACCAGCCGTCACGGCCGATAGTGACGCTCGTTGTCGTTGGCAGGTGCATTACATAGGCTGAAATGTTTGGTACCCCATTACATATTAGTCTTGATGATTCAATATACTTTTGCAGGTTGGCACCGTTTTTTACTTGACGCTCTTAGCATCTCCCTCGGAGAAACTTT  CCCGCCTCCCAGCGGCAAAGCCTCAA CGCTCGAGCTGATTCATGTTGGCTGGAGTACTGTTTTGGTTGTCCCAATGGTTGGCGCTTCACTTATCGTGCAGCAATTTGGCAAAGCTCCAATTCTCTTTTTTCTTCAGGTGAGATCTAGCCATTCAAGCTTGAATTCTCCTTTTCCATCTCAACTATACAAGCTAATCTATCATGCACCTCCGAAAGTTTACTTGGCGTTTCATGTT TGAACTTCTCTTGATACCATTCTCGGGGTATACCAGCTTCATCACGAGCTGGGTAGTTAAA TGGACCCTTCAGCACCACATCATGCTCCTTTATTAAG TCTCTAAAAGTTGCATCTGGGACACGACCCATCATTTGGCATACTTTTAGGAACCAATGCAGACCTACAGAGGCATGTGC]
[-] EMBL BM418529             [                                                                                                                                                                                                                                                                                                  ttttTAAAAACCAGCCGTCATGGCCGATAGNGAGGCTCG TGTCGTTGGCAGGTGCATTACATAGGCTGAAATG TTGGTACCCCATTACATATTAGTCTTGATGATTCAATATACTTTTGCAGGTTGGCACCGTTTTTTACTTGACGCTCTTAGCATCTCCCTCGGAGAAACTTTCCCCCGCGTCCCAGCGGCAAAGCCTCAATCGCTCGAGCTGATTCATGTTGGCTGGAGTACTG TTTGGTTGTCCCAATGGTTGGCGCTTCACTTATCGTGCAGCAA TTGGCAAAGCTCCAATTCTCTCTTTTCTTCAGGTGAGATCTAGCCATTCAAGCTTGAATTCTCCTTTTCCATCTCAACTATACAAGCTAATCTATCATGCACCTCCGAAAGTTTACTTGGCGTTTCATGTTNAGAACTTCTCTTGATACCATTCTCGGGGTATACCAGCTTCATCACGAGCTGGGTAGTTAAACTGGACCCTTCAGCACCACATCATGCTCCTTTATTAAGCTCTCTAAAAGTTG                                                                   ]


>consensus_7889#0 TAAGCGAAAAGATGAGACTCTTGAATTTGCCCCCTTAACGTACACTGGTTAGCAACTGCT CTTTCCGTCTCAATATAAATGTTATATCTACATTAGGTTATATTTATATTGAGATGGAAG GAGTACTACCTGAATCCAAACTCTGATTGATCTCTTCCGTTTTTGATAATACGCAATCGG AGCAGGAGAGAGGTTTTGGATTATGGATAGTACTGGAATGCGGTGATTAGGATGGAAGAA GCATTCTGGACGATACAGGATCGGACATCTGGGCACGATTACTCCTCCTGGAAGTAAAAA CCAGCCGTCACGGCCGATAGTGACGCTCGTTGTCGTTGGCAGGTGCATTACATAGGCTGA AATGTTTGGTACCCCATTACATATTAGTCTTGATGATTCAATATACTTTTGCAGGTTGGC ACCGTTTTTTACTTGACGCTCTTAGCATCTCCCTCGGAGAAACTTTCCCGCCTCCCAGCG GCAAAGCCTCAACGCTCGAGCTGATTCATGTTGGCTGGAGTACTGTTTTGGTTGTCCCAA TGGTTGGCGCTTCACTTATCGTGCAGCAATTTGGCAAAGCTCCAATTCTCTTTTTTCTTC AGGTGAGATCTAGCCATTCAAGCTTGAATTCTCCTTTTCCATCTCAACTATACAAGCTAA TCTATCATGCACCTCCGAAAGTTTACTTGGCGTTTCATGTTTGAACTTCTCTTGATACCA TTCTCGGGGTATACCAGCTTCATCACGAGCTGGGTAGTTAAATGGACCCTTCAGCACCAC ATCATGCTCCTTTATTAAGTCTCTAAAAGTTGCATCTGGGACACGACCCATCATTTGGCA TACTTTTAGGAACCAATGCAGACCTACAGAGGCATGTGC



consensusID : consensus_7889#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 482
fasta sequence
                              [TTTTTTTTTTTGGAAGNAAAAACCAGCCGTCACGGNCGATAGTGACGCTCGTTGTCGTTGGCAGGTGCATTACATAGGCTGAAATGTTTGGNACCCCATNACATATTAGTCTTGATGATTCAATATACTTTTGCAGGTTGGCACCGTTTTTTACTTGACGCTCTTAGCATCTCCCTAGNANAAACTTTCCCGCCTCCCAGCGGNAAAGCCTCAACGCTCGAGCTGATTCATGTTGGCTGGAGTACTGTTTTGGTTGNNCCAATGGTTGGCGCTTNACTTATCGAGCAGCAATTTGGCAAAGCTCCAATTCTNTTTTTTCTTCAGCGTGAGATACTAGCCATTCAAGCTTGAATTCTCCTTTTCCATCTCAACTATACAAGCTAATCTCCGAAAGTTTACTTGGCGTTTCATGTTTGAACTTCTCTTGATACCATTCTCGGGGTATACCAGCTTCATCACGAGCTGGGTAGTTAAATGGACCC]

[-] EMBL AU174177             [TTTTTTTTTTTGGAAGNAAAAACCAGCCGTCACGGNCGATAGTGACGCTCGTTGTCGTTGGCAGGTGCATTACATAGGCTGAAATGTTTGGNACCCCATNACATATTAGTCTTGATGATTCAATATACTTTTGCAGGTTGGCACCGTTTTTTACTTGACGCTCTTAGCATCTCCCTAGNANAAACTTTCCCGCCTCCCAGCGGNAAAGCCTCAACGCTCGAGCTGATTCATGTTGGCTGGAGTACTGTTTTGGTTGNNCCAATGGTTGGCGCTTNACTTATCGAGCAGCAATTTGGCAAAGCTCCAATTCTN                                                                                                                                                                          ]
[-] EMBL CB681283             [                                                                     TTACATAGGCTGAAATGTTTGGTACCCCATTACATATTAGTCTTGATGATTCAATATACTTTTGCAGGTTGGCACCGTTTTTTACTTGACGCTCTTAGCATCTCCCTCGGAGAAACTTTCCCGCCTCCCAGCGGCAAAGCCTCAACGCTCGAGCTGATTCATGTTGGCTGGAGTACTGTTTTGGTTGTCCCAATGGTTGGCGCTTCACTTATCGTGCAGCAATTTGGCAAAGCTCCAATTCTCTTTTTTCTTCAGCGTGAGATACTAGCCATTCAAGCTTGAATTCTCCTTTTCCATCTCAACTATACAAGCTAATCTCCGAAAGTTTACTTGGCGTTTCATGTTTGAACTTCTCTTGATACCATTCTCGGGGTATACCAGCTTCATCACGAGCTGGGTAGTTAAATGGACCC]


>consensus_7889#1 TTTTTTTTTTTGGAAGNAAAAACCAGCCGTCACGGNCGATAGTGACGCTCGTTGTCGTTG GCAGGTGCATTACATAGGCTGAAATGTTTGGNACCCCATNACATATTAGTCTTGATGATT CAATATACTTTTGCAGGTTGGCACCGTTTTTTACTTGACGCTCTTAGCATCTCCCTAGNA NAAACTTTCCCGCCTCCCAGCGGNAAAGCCTCAACGCTCGAGCTGATTCATGTTGGCTGG AGTACTGTTTTGGTTGNNCCAATGGTTGGCGCTTNACTTATCGAGCAGCAATTTGGCAAA GCTCCAATTCTNTTTTTTCTTCAGCGTGAGATACTAGCCATTCAAGCTTGAATTCTCCTT TTCCATCTCAACTATACAAGCTAATCTCCGAAAGTTTACTTGGCGTTTCATGTTTGAACT TCTCTTGATACCATTCTCGGGGTATACCAGCTTCATCACGAGCTGGGTAGTTAAATGGAC CC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7889#0      TAAGCGAAAAGATGAGACTCTTGAATTTGCCCCCTTAACGTACACTGGTTAGCAACTGCT 60
consensus_7889#1      ------------------------------------------------------------
                                                                                  

consensus_7889#0      CTTTCCGTCTCAATATAAATGTTATATCTACATTAGGTTATATTTATATTGAGATGGAAG 120
consensus_7889#1      ------------------------------------------------------------
                                                                                  

consensus_7889#0      GAGTACTACCTGAATCCAAACTCTGATTGATCTCTTCCGTTTTTGATAATACGCAATCGG 180
consensus_7889#1      ------------------------------------------------------------
                                                                                  

consensus_7889#0      AGCAGGAGAGAGGTTTTGGATTATGGATAGTACTGGAATGCGGTGATTAGGATGGAAGAA 240
consensus_7889#1      ------------------------------------------------------------
                                                                                  

consensus_7889#0      GCATTCTGGACGATACAGGATCGGACATCTGGGCACGATTACTCCTCCTGGAAGTAAAAA 300
consensus_7889#1      --------------------------------------TTTTTTTTTTTGGAAGNAAAAA 22
                                                            **  *  *  ****** *****

consensus_7889#0      CCAGCCGTCACGGCCGATAGTGACGCTCGTTGTCGTTGGCAGGTGCATTACATAGGCTGA 360
consensus_7889#1      CCAGCCGTCACGGNCGATAGTGACGCTCGTTGTCGTTGGCAGGTGCATTACATAGGCTGA 82
                      ************* **********************************************

consensus_7889#0      AATGTTTGGTACCCCATTACATATTAGTCTTGATGATTCAATATACTTTTGCAGGTTGGC 420
consensus_7889#1      AATGTTTGGNACCCCATNACATATTAGTCTTGATGATTCAATATACTTTTGCAGGTTGGC 142
                      ********* ******* ******************************************

consensus_7889#0      ACCGTTTTTTACTTGACGCTCTTAGCATCTCCCTCGGAGAAACTTTCCCGCCTCCCAGCG 480
consensus_7889#1      ACCGTTTTTTACTTGACGCTCTTAGCATCTCCCTAGNANAAACTTTCCCGCCTCCCAGCG 202
                      ********************************** * * *********************

consensus_7889#0      GCAAAGCCTCAACGCTCGAGCTGATTCATGTTGGCTGGAGTACTGTTTTGGTTGTCCCAA 540
consensus_7889#1      GNAAAGCCTCAACGCTCGAGCTGATTCATGTTGGCTGGAGTACTGTTTTGGTTGNNCCAA 262
                      * ****************************************************  ****

consensus_7889#0      TGGTTGGCGCTTCACTTATCGTGCAGCAATTTGGCAAAGCTCCAATTCTCTTTTTTCTTC 600
consensus_7889#1      TGGTTGGCGCTTNACTTATCGAGCAGCAATTTGGCAAAGCTCCAATTCTNTTTTTTCTTC 322
                      ************ ******** *************************** **********

consensus_7889#0      AG-GTGAGAT-CTAGCCATTCAAGCTTGAATTCTCCTTTTCCATCTCAACTATACAAGCT 658
consensus_7889#1      AGCGTGAGATACTAGCCATTCAAGCTTGAATTCTCCTTTTCCATCTCAACTATACAAGCT 382
                      ** ******* *************************************************

consensus_7889#0      AATCTATCATGCACCTCCGAAAGTTTACTTGGCGTTTCATGTTTGAACTTCTCTTGATAC 718
consensus_7889#1      AAT-----------CTCCGAAAGTTTACTTGGCGTTTCATGTTTGAACTTCTCTTGATAC 431
                      ***           **********************************************

consensus_7889#0      CATTCTCGGGGTATACCAGCTTCATCACGAGCTGGGTAGTTAAATGGACCCTTCAGCACC 778
consensus_7889#1      CATTCTCGGGGTATACCAGCTTCATCACGAGCTGGGTAGTTAAATGGACCC--------- 482
                      ***************************************************         

consensus_7889#0      ACATCATGCTCCTTTATTAAGTCTCTAAAAGTTGCATCTGGGACACGACCCATCATTTGG 838
consensus_7889#1      ------------------------------------------------------------
                                                                                  

consensus_7889#0      CATACTTTTAGGAACCAATGCAGACCTACAGAGGCATGTGC 879
consensus_7889#1      -----------------------------------------
                                                               




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)