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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7893#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 714 fasta sequence
[CATTCTCATCGGCAAGCAAAGAGCAAGAGAGAAGAGAGAGGAGATGGTGGATGTGAAGCACACGGCCGGCCACGCCGGCGCGAGGAGAGTCAAGCTGTTCCGGGTGCCGCGGCGGCCGGCCAGGGCGGCGGAGGAGGCGGGGGCGCCGCTGGTACCGGCTGGCGAGAGGAGGAAGAGGAAGATGGCGGTGGCGAGGCTCGGCGGCGGCGCCGGCGGGCGGAGGCGGCTGTTCGGTGCGTTCCGGCGGCTGCGGGTGCGGTGGCTGGCGGCGCTGTACCGCCGCTCGCTGCGGCGGCTGCGCGCGTACTACGCCAAGGCGGTCCAGGACCTCCTCGAGGGCGC-GGCGGCCA-TGAGCACGCTGCGCTCGCAGGCCGCCGCCGACTGCTCGTTCGGCACTGCGTTCGCGCCGGTGGTCGCCGTCGGCTACTGATGAGCGCGTGCATGTCTGCAGCACCGTTCTGGCCTGTGCATGAAGAACATGAAGCCATGGAGCAGTAGCACCCCTGTGTATAGACGTGGTTAACTGTCCATGATGAATTCCAGTGCTGATCTTTTTTCTCTCTTCATTTTATGGATCTCGAGTTCTCGACAATGATCAGTGTTCATCCTGTTCGTAATTAGCTAGCATGTAGTACAACTTTCCGGATCTGAAAAAAATAATTATATTATGTTAAAGAAGAGAGAAGATAGTAAGAGAAAAAAAATATATTCGCT]
[+] EMBL AK062611 [CATTCTCATCGGCAAGCAAAGAGCAAGAGAGAAGAGAGAGGAGATGGTGGATGTGAAGCACACGGCCGGCCACGCCGGCGCGAGGAGAGTCAAGCTGTTCCGGGTGCCGCGGCGGCCGGCCAGGGCGGCGGAGGAGGCGGGGGCGCCGCTGGTACCGGCTGGCGAGAGGAGGAAGAGGAAGATGGCGGTGGCGAGGCTCGGCGGCGGCGCCGGCGGGCGGAGGCGGCTGTTCGGTGCGTTCCGGCGGCTGCGGGTGCGGTGGCTGGCGGCGCTGTACCGCCGCTCGCTGCGGCGGCTGCGCGCGTACTACGCCAAGGCGGTCCAGGACCTCCTCGAGGGCGC GGCGGCCA TGAGCACGCTGCGCTCGCAGGCCGCCGCCGACTGCTCGTTCGGCACTGCGTTCGCGCCGGTGGTCGCCGTCGGCTACTGATGAGCGCGTGCATGTCTGCAGCACCGTTCTGGCCTGTGCATGAAGAACATGAAGCCATGGAGCAGTAGCACCCCTGTGTATAGACGTGGTTAACTGTCCATGATGAATTCCAGTGCTGATCTTTTTTCTCTCTTCATTTTATGGATCTCGAGTTCTCGACAATGATCAGTGTTCATCCTGTTCGTAATTAGCTAGCATGTAGTACAACTTTCCGGATCTGAAAAAAATAATTATATTATGTTAAAGAAGAGAGAAGATAGTAAGAGAAAAAAAATATATTCGCT]
[+] EMBL OS06473A [ GATGGTGGATGTGAAGCACACGGCCGGCCACGCCGCGGCGAGGAGAGTCAAGCTGTTCCGGGTGCCGCGGCGGCCGGCCAGGGCGGCGGAGGAGGCGGGGGCGCCGCTGGTACCGGCTGGCGAGAGGAGGAAGAGGAAGATGGCGGTGGCGAGGCTCGGCGGCGGCG CGGCGGGCGGAGGCGGCTGTTCGGTGCGTTCCGGCGGCTGCGGGTGCGGTGGCTGGCGGCGCTGTACCGCCGCTCGCTGCGGCGGCTGCGCGCGTACTACGCCAAGGCGGTCCAGGACCTTCTCGAGGGCGCGGGCGGCCATTGAGCACGCTGCGt ]
[+] EMBL AU070216 [ gccgcaGCCGCGGAGGAGGCGGGGGCGCCGCTGGTACCGGCTGGCGAGAGGAGGAAGAGGAAGATGGCGGTGGCGAGGCTCGGCGGCGGCG CNGCGGGCGGAGGCGGCTGTTCGGTGCGTTCCGGCGGCTGCGGGTGCGGTGGCTGGCGGCGCTGTACCGCCGCTCGCTGCGG GNCTGCGCGCGTACTACGCCAAGGCGGTCCAGGACCTCCTCGAGGGCGC NGCGGCCA TGAGCACGCTGCGCTCG ANTCCGCCGCCGACTGCTCGTTCGGCACTGCGTTCGCNCCGGTGGTCGCCGTCGG TACTGATGAGCGCGTGCATGTCTTCAANAACGTTCTGGCCTGTGCATGAAGANCATGAAGCCATGGAGCAGTANAACCCCTGTGTATAGACGTGG TAACTGTCCATGNTGAATTC ]
[+] EMBL OSR15323A [ gccgcaGCCGCGGAGGAGGCGGGGGCGCCGCTGGTACCGGCTGGCGAGAGGAGGAAGAGGAAGATGGCGGTGGCGAGGCTCGGCGGCGGCGCC GCGGGCGGAGGCGGCTGTTCGGTGCGTTCCGGCGGCTGCGGGTGCGGTGGCTGGCGGCGCTGTACCGCCGCTCGCTNCGGCGNCTGCGCGCTTACTACGCCAAGGCGGTCCAGGACCTNCTCGAGGGCGC GGCGGCCA TGAGCACGCTGCGCTCGCAAGCCGCCGCCGACTGCTCGTTCGGNACTGCTTTCGCGCCGGTGGTCGCCGTCGGCTAC ]
consensusID : consensus_7893#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 605 fasta sequence
[TCTTCCTCTCTGCTCTCAACCGCCGCAGGCGCCACTTCGCCCAACGTTGTGGCGCTCACCCGCCGTCGCCGCTCCGCTCGCTGCGCTCGCCCGCCGCCTCTCCTCCTGCGGTACAGCGCCGCCAACCACCGCACCCGCAGCCACCGGAATGCACCGAACAGCCGCCTCCGCCCGCCGGCGCCGCCGCCGAGCCTCGCACGGTCACACGGCGGCGCGACGACGCAGCAGAAACTTGCGGAGGGAGGGAGCGGCGACGGGATGGGCACTGAGGGAGGGAGCGCGCGTGGTAACGGCAGCGCGAAGGTAGCAGCGGCGACTGCACTCGAGGGAGTGGCGTTGGCAGCGGCGGCTGCTGCTGCCCTCGGAGGAAACGGCGCGGCTCTGCTTCTGCTGCCCTAGGAGACCACCATCGACGTAGCTTGCTCGTCCAGCATCCAAGCCTGACATCCACCCCCACCTCTCTTTTGACTGCTGCTACCAGGAAAGACTTGCTTGTGTGTGTTGTCAGTTGTCACAAGGTGTTCGACAAACTTGATGTTGGATATGAATATCGGTTGGATTTGGCTATATCTGTGCTTTTGATTCATTGTATGTAAATATATGTG]
[+] EMBL AK066176 [TCTTCCTCTCTGCTCTCAACCGCCGCAGGCGCCACTTCGCCCAACGTTGTGGCGCTCACCCGCCGTCGCCGCTCCGCTCGCTGCGCTCGCCCGCCGCCTCTCCTCCTGCGGTACAGCGCCGCCAACCACCGCACCCGCAGCCACCGGAATGCACCGAACAGCCGCCTCCGCCCGCCGGCGCCGCCGCCGAGCCTCGCACGGTCACACGGCGGCGCGACGACGCAGCAGAAACTTGCGGAGGGAGGGAGCGGCGACGGGATGGGCACTGAGGGAGGGAGCGCGCGTGGTAACGGCAGCGCGAAGGTAGCAGCGGCGACTGCACTCGAGGGAGTGGCGTTGGCAGCGGCGGCTGCTGCTGCCCTCGGAGGAAACGGCGCGGCTCTGCTTCTGCTGCCCTAGGAGACCACCATCGACGTAGCTTGCTCGTCCAGCATCCAAGCCTGACATCCACCCCCACCTCTCTTTTGACTGCTGCTACCAGGAAAGACTTGCTTGTGTGTGTTGTCAGTTGTCACAAGGTGTTCGACAAACTTGATGTTGGATATGAATATCGGTTGGATTTGGCTATATCTGTGCTTTTGATTCATTGTATGTAAATATATGTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7893#0 CATTCTCATCGGCAAGCAAAGAGCAAGAGAGAAGAGAGAGGAGATGGTGGATGTGAAGCA 60
consensus_7893#1 ---------------------------------------------------------TCT 3
*
consensus_7893#0 CACGGCCGGCCACGCCGGCGCGAGGAGAGTCAAGCTGTTCCGGGTGCCGCGGCGGCCGGC 120
consensus_7893#1 TCCTCTCTGCT-CTCAACCGCCGCAGGCGCCA--CTTCGCCCAACGTTGTGGCGCTCACC 60
* * ** * * *** * * ** ** ** * * **** * *
consensus_7893#0 CAGGGCGGCGGAGGAGGCGGGGGCGCCGCTGGTACCGGCTGGCGAGAGGAGGAAGAGGAA 180
consensus_7893#1 CGCCGTCGCCGCTCCGCTCGCTGCGCT-CGCCCGCCGCCTCTCCTCCTGCGGTACAGC-- 117
* * ** * * * **** * *** ** * * ** * **
consensus_7893#0 GATGGCGGTGGCGAGGCTCGGCGGCGGCGCCGGCGGGCGGAGGCGGCTGTTCGGTGCGTT 240
consensus_7893#1 GCCGCCAACCACCGCACCCG-CAGCCACCGGAATGCACCGAACAGCCGCCTCCGCCCGCC 176
* * * * * ** * ** * * * ** * * ** * **
consensus_7893#0 CCGGCGGCTGCGGGTGCGGTGGCTGGCGGCGCTGTACCGCCGCT-CGCTGCGGCGGCT-G 298
consensus_7893#1 GGCGCCGCCGCCGA-GCCTCGCACGGTCACACGGCGGCGCGACGACGCAGCAGAAACTTG 235
** ** ** * ** * ** * * * *** * *** ** * ** *
consensus_7893#0 CGCGCGTACTACGCCAAGGCGGTCCAGGACCTCCTCGAGGGCGCGGCGGCCATGAGCACG 358
consensus_7893#1 CGGAGGGAGGGAGCGGCGACGGGATGGGCACTGAGGGAGGGAGCGCGCGTGGTAACGGCA 295
** * * ** * *** ** ** ***** *** * * * *
consensus_7893#0 CTGCGCTCGCAGGCCGCCGCCGACTGCTCGTTCGGCACTG-CGTTCGCGCCGGTGGTCGC 417
consensus_7893#1 GCGCGAAGGTAG--CAGCGGCGACTGCACTCGAGGGAGTGGCGTTGGCAGCGGCGGCTGC 353
*** * ** * ** ******* * ** * ** **** ** *** ** **
consensus_7893#0 CGTCGGCTACTGATGAGCGCGTGCATGTCTGCAGCACCGTTCTGGCCTGTGCATGAAGAA 477
consensus_7893#1 TGCTGCCCTCGGAGGAAACGGCGCGGCTCTGC-------TTCTG--CTGCCCTAGGAGAC 404
* * * * ** ** * ** ***** ***** *** * * ***
consensus_7893#0 CATGAAGCCATGGAGCAGTAGCACCCCTGTGTATAGACGTGGTTAAC-TGTCCATGATGA 536
consensus_7893#1 CACCAT-CGACGTAGCT-TGCTCGTCCAGCATCCAAGCCTGACATCCACCCCCACCTCTC 462
** * * * * *** * ** * * * * ** * ***
consensus_7893#0 ATTCCAGTGCTGATCTTTTTTCTCTCTTCATTTTATGGATCTCGAGTTCTCGACAATGAT 596
consensus_7893#1 TTTTGACTGCTGCTACCAGGAAAGACTTGCTTGTGTGTGTTGTCAGTTGTC-ACAA---- 517
** * ***** * *** ** * ** * **** ** ****
consensus_7893#0 CAGTGTTCATCCTGTTCGTAATTAGCTA-GCATGTAGTACAACTTT--CCGGATCTGAAA 653
consensus_7893#1 -GGTGTTCGACAAACTTGATGTTGGATATGAATATCGGTTGGATTTGGCTATATCTGTGC 576
****** * * * ** * ** * ** * * *** * *****
consensus_7893#0 AAAATAATTATATTATGTTAAAGAAGAGAGAAGATAGTAAGAGAAAAAAAATATATTCGC 713
consensus_7893#1 TTTTGATTCATTGTATGT-AAATATATGTG------------------------------ 605
* * ** ***** *** * * *
consensus_7893#0 T 714
consensus_7893#1 -
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||