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Oryza sativa
cluster # 7897 cluster # 7897       Sequences # 5       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7897#0 length = 840 sequences # 5  

consensusID : consensus_7897#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 840
fasta sequence
                              [GGAGCGTATAAAAGGAGGGCTGGTGATCGATCAGCTCAAGTGCTCAAACCCTCTCAAGTTTCATCATCACCCAACACAATCGCAAGCAGCTAGCAACAGGGCCAACCCGACGAACGTGAGATGGCGGCAG-CGT-AGAGGAGGCCTTCCCGATCGGGTTCACGAAGGGGATACGGTCCTACTGGCGAA--CGCA-AGTACCATAGCGTGGACAGCAGCGCGGCGGGCCGCGGCACGAGCAACCTGGTGCGGCTCGGGGGCGGAAGCGGCAGCGGCAGCGACGGCGGGGCGTGGGCCGTGCGGCTGGGAGGCATGTTCCGCACGCGCGTCAAGGCGGCGGCGCCCGCGGCGACGACGACCGCCGTGGCGAAGGTACCCGCGCGCGTGCTGGGGCGGGTACGGGACGCGTACGTGGACGCCATGGTCGGCGTGGCCAAGAAGCAGGCGGCCGCGGCGCTGTCGCAGCCGGGAGCCGGGACGACGGAGGCGCTGTGGCAGAAGCGCGTGCCGGTACGACGGTCGCGCGGGCAGAGCAAGAAGCAGCTGCGGCAGAAGGCGGACGAGCTCGGGCAGAGACTGGTCATGGAGATGTACAAGTCCGTCCTCGCGTCGAGGGACCTCTCCAGCATGCTCCAGGCATCAAGGGCGCAATAGCATGCAACACTACATCGTGCAAAAGTGATGCATCCGCGCAAGCTTAACGTGAACTAACGGCTGTATATAAGGAGATGTACATATGTTTGTTGCACAATATGCATGGCCAGACCGGCTAGAAGACACTTATTAGACGCTCATAACCCTTGGATTCCCTTTCATCCCTAGAA-AAGAAAATCCGTGTTCCCTTCT]

[+] EMBL OSS13101A            [GGAGCGTATAAAAGGAGGGCTGGTGATCGATCAGCTCAAGTGCTCAAACCCTCTCAAGTTTCATCATCACCCAACACAATCGCAAGCAGCTAGCAACAGGGCCAACCCGACGAACGTGAGATGGCGGCAG CGT AGAGGAGGCCTTCCCGATCGGGTTCACGAAGGGGATACGGTCCTACTGGCGAA  NGCA AGTACCATAGCGTGGACAGCAGCGCGGCGGGCCG GGCACGAGCAACCTGGTGCGGCTCGGGGGCGNAAng                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL OSS13169A            [GGAGCGTATAAAAGGAGGGCTGGTGATCGATCAGCTCAAGTGCTCAAACCCTCTCAAGTTTCATCATCACCCAACACAATCGCAAGCAGCTAGCAACAGGGCCAACCCGACGAACGTGAGATGGCGGCAG CGTAAGAGGAGGCCTTCCCGATCGGTTTCACGAAGGGGATACGGTCCTACTGGCGAA  CGCANAGTACCATAGCGTGGACAGCAGCNCGNCGGGCCGGGGCACGAGCAACCTGGTNCGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AK106910             [                                              AACCCTCTCAAGTTTCATCATCACCCAACACAATCGCAAGCAGCTAGCAACAGGGCCAACCCGACGAACGTGAGATGGCGGCAGCCGT AGAGGAGGCCTTCCCGATCGGGTTCACGAAGGGGATACGGTCCTACTGGCGAAGCCGCA AGTACCATAGCGTGGACAGCAGCGCGGCGGGCCGCGGCACGAGCAACCTGGTGCGGCTCGGGGGCGGAAGCGGCAGCGGCAGCGACGGCGGGGCGTGGGCCGTGCGGCTGGGAGGCATGTTCCGCGCGCGCGTCAAGGCGGCGGCGCCCGCGGCGACGACGACCGCCGTGGCGAAGGTACCCGCGCGCGTGCTGGGGCGGGTACGGGACGCGTACGTGGACGCCATGGTCGGCGTGGCCAAGAAGCAGGCGGCCGCGGCGCTGTCGCAGCCGGGAGCCGGGACGACGGAGGCGCTGTGGCAGAAGCGCGTGCCGGTACGACGGTCGCGCGGGCAGAGCAAGAAGCAGCTGCGGCAGAAGGCGGACGAGCTCGGGCAGAGACTGGTCATGGAGATGTACAAGTCCGTCCTCGCGTCGAGGGACCTCTCCAGCATGCTCCAGGCATCAAGGGCGCAATAGCATGCAACACTACATCGTGCAAAAGTGATGCATCCGCGCAAGCTTAACGTGAACTAACGGCTGTATATAAGGAGATGTACATATGTTTGTTGCACAATATGCATGGCCAGACCGGCTAGAAGACACTTATTAGACGCTCATAACCCTTGGATTCCCTTTCATCCCTAGAA AAGAAAATCCGTGTTCCCTTCT]
[+] EMBL AU162599             [                                                           TTCATCATCACCCAACACAATCGCAAGCAGCTAGCAACAGGGCCAACCCGACGAACGTGAGATGGCGGCAGCCGT AGAGGAGGCCTTCCCGATCGGGTTCACGAAGGGGATACGGTCCTACTGGCGAAGCCGCA AGTACCATAGCGTGGACAGCAGCGCGGCGGGCCGCGGNACGAGCAACCTGGTGCGGCTCGGGGGCGGAAGCGGCAGCGGCAGCGACGGCGGGGCGTGGGCCGTGCGGCTGGGAGGNATGTTCCGCACGCGCGTCAAGGCGGCGGCGCCCGCGGCGACGACGACCGCCGTGGCGAAGGTACCCGCGCGCGTGCTGGGGCGGGTACGGGACGCGTACGTGGACGCCATGGTCGGCGTGGCCAAGAA                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CA755617             [                                                                                                                                                                                                                                 GCCGCGGCACGAGCAACCTGGTGCGGCTCGGGGGCGGAAGCGGCAGCGGCAGCGACGGCGGGGCGTGGGCCGTGCGGCTGGGAGGCATGTTCCGCACGCGCGTCAAGGCGGCGGCGCCCGCGGCGACGACGACCGCCGTGGCGAAGGTACCCGCGCGCGTGCTGGGGCGGGTACGGGACGCGTACGTGGACGCCATGGTCGGCGTGGCCAAGAAGCAGGCGGCCGCGGCGCTGTCGCAGCCGGGAGCCGGGACGACGGAGGCGCTGTGGCAGAAGCGCGTGCCGGTACGACGGTCGCGCGGGCAGAGCAAGAAGCAGCTGCGGCAGAAGGCGGACGAGCTCGGGCAGAGACTGGTCATGGAGATGTACAAGTCCGTCCTCGCGTCGAGGGACCTCTCCAGCATGCTCCAGGCATCAAGGGCGCAATAGCATGCAACACTACATCGTGCAAAAGTGATGCATCCGCGCAAGCTTAACGTGAACTAACGGCTGTATATAANGAGATGTACATATGTTTGTTGCACAATATGCATGGNCAGACCGGCTAGAAGA ACTTATTAGACGCTCATAACCCTTGGATTCCCTTTCATCCCTAGAANNAGAAATCCCGTG         ]


>consensus_7897#0 GGAGCGTATAAAAGGAGGGCTGGTGATCGATCAGCTCAAGTGCTCAAACCCTCTCAAGTT TCATCATCACCCAACACAATCGCAAGCAGCTAGCAACAGGGCCAACCCGACGAACGTGAG ATGGCGGCAGCGTAGAGGAGGCCTTCCCGATCGGGTTCACGAAGGGGATACGGTCCTACT GGCGAACGCAAGTACCATAGCGTGGACAGCAGCGCGGCGGGCCGCGGCACGAGCAACCTG GTGCGGCTCGGGGGCGGAAGCGGCAGCGGCAGCGACGGCGGGGCGTGGGCCGTGCGGCTG GGAGGCATGTTCCGCACGCGCGTCAAGGCGGCGGCGCCCGCGGCGACGACGACCGCCGTG GCGAAGGTACCCGCGCGCGTGCTGGGGCGGGTACGGGACGCGTACGTGGACGCCATGGTC GGCGTGGCCAAGAAGCAGGCGGCCGCGGCGCTGTCGCAGCCGGGAGCCGGGACGACGGAG GCGCTGTGGCAGAAGCGCGTGCCGGTACGACGGTCGCGCGGGCAGAGCAAGAAGCAGCTG CGGCAGAAGGCGGACGAGCTCGGGCAGAGACTGGTCATGGAGATGTACAAGTCCGTCCTC GCGTCGAGGGACCTCTCCAGCATGCTCCAGGCATCAAGGGCGCAATAGCATGCAACACTA CATCGTGCAAAAGTGATGCATCCGCGCAAGCTTAACGTGAACTAACGGCTGTATATAAGG AGATGTACATATGTTTGTTGCACAATATGCATGGCCAGACCGGCTAGAAGACACTTATTA GACGCTCATAACCCTTGGATTCCCTTTCATCCCTAGAAAAGAAAATCCGTGTTCCCTTCT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)