These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7900#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1597 fasta sequence [AGAATTTTCCCTCCAACCTGCTAAAACCCTAGCACCCGCCGCCCCCGACGGCGCCGCTCGACGACGAGTCGCCGGCGTCGGTCGCCGACGAGAGCTAGGGCAAGTGCGGCGGTACAGGGTTTCAGAGGAGGAGGGGAGCATGGCGTCGAACAACGGCGCGGGGACCCTCAGGTCAACCTCCATCAACGGCGTCAAGCTCTACTCCATCACCGGCAACCGCTACGTCGCCCCATGGGTCCTCTCGAAGAAGAAGCGCGCCCTCCGCAAGGACGCAGAGTATCAGCGGAGGCTGGATTTGATCCATGACCTGAGGTTCGAGACCGCCACCACCAAGATCAAGGTGACACCGGATGAGCAGTATGTGATCGCCTCAGGTATTTACCCCCCACAAGTTAAAGTCTATGAATTGAAGGAGTTATCAATGAAGTTTGAGAGGCACATGATTTCAGAAATTGTAGATTTCCAGGTCCTTGGTGATGATTACTCAAAACTTGCATTTTTGTGTGCTGACCGTTCTGTATGCCTGCATGCAAAGTACGGTAGACACTATAGCTTGAGAATTCCAAGAATGGGAAGAGATATGGCATATGATTGCTGGTCTTGTGATTTGCTTTGCGCTGCTTCATCACCAGATGTGTATAGAATCAATTTAGAGCAGGGACGATTCCTTGCATCTCTTTCATCTCAATCTCCAGCAATAAATGTGGTTTCTCGGAGTAACATACATGGGCTCATTGCTTGTGGTGGTGAGGATGGTGTGGTTGAGTGCTTTGATATGAGGAGAAAATCTTCTGTTGGCAGAATTAACACAGCTGTCTCTCCTGAAGATTTTAATCAGGAGGTCACATCTCTGCAATTCGATGAAAACCAAGGATACCTTATGGCAGTAGGGAGCAGCACAGGAAAGGTAGCAATATATGATCTACGTATGTCTTCCCCTTTGCGAGTTAAGGATCATATGTATGGTAGCCCAATATTAAGTATTAAGTGGCACCAGACACTTAATTCTACTGAACCTAAGCTGATTACTGCTGACAAGCATATAGTGAGAGTTTGGGATCCTAATACAGGAAATAACATGACTAGCATTGAACCAGATGGTGGTACTATCAATGATGTTTGTGTTTTCCGGAACAGTGGTTTGATGTTATTAGCTTTGGACAATAGCCAGATCCCTGCCCACTTTATTCCTGCATTGGGCCCTGCTCCAAAGTGGTGCTCGCATCTTGATAATCTAACGGAAGAAATGGAAGAGAAGACAGAGAATATTGTATATGAAGATTTCAAGTTTTTAACAAAAGATGAGATGGATCGATATGATCTCTCTAAGTACATTGATCAGGGTCTTGTGAGAGCGCATATGCATGGATATGTGATGAAACTTCAGCTATATAAGAAGCTACTAGCTACTAGTGCTGTTGATCCTGAGAATATTCAAGAGAAGGTTAAGCAAAAGAAAATAGAAGAACAGAGAAAATCTCGCATAACGCAAGTTGTGAAAATACCAAAGGTTAACAGGCAAATTATGGATAATATACTTAAAGAGGAAGAGGAAATGGATGCTGATTTGGAGAATGATGAAAAATCAGGCATCAAG] [+] EMBL AK064390 [AGAATTTTCCCTCCAACCTGCTAAAACCCTAGCACCCGCCGCCCCCGACGGCGCCGCTCGACGACGAGTCGCCGGCGTCGGTCGCCGACGAGAGCTAGGGCAAGTGCGGCGGTACAGGGTTTCAGAGGAGGAGGGGAGCATGGCGTCGAACAACGGCGCGGGGACCCTCAGGTCAACCTCCATCAACGGCGTCAAGCTCTACTCCATCACTGGCAACCGCTACGTCGCCCCATGGGTCCTCTCGAAGAAGAAGCGCGCCCTCCGCAAGGACGCAGAGTATCAGCGGAGGCTGGATTTGATCCATGACCTGAGGTTCGAGACCGCCACCACCAAGATCAAGGTGACACCGGATGAGCAGTATGTGATCGCCTCAGGTATTTACCCCCCACAAGTTAAAGTCTATGAATTGAAGGAGTTATCAATGAAGTTTGAGAGGCACATGATTTCAGAAATTGTAGATTTCCAGGTCCTTGGTGATGATTACTCAAAACTTGCATTTTTGTGTGCTGACCGTTCTGTATGCCTGCATGCAAAGTACGGTAGACACTATAGCTTGAGAATTCCAAGAATGGGAAGAGATATGGCATATGATTGCTGGTCTTGTGATTTGCTTTGCGCTGCTTCATCACCAGATGTGTATAGAATCAATTTAGAGCAGGGACGATTCCTTGCATCTCTTTCATCTCAATCTCCAGCAATAAATGTGGTTTCTCGGAGTAACATACATGGGCTCATTGCTTGTGGTGGTGAGGATGGTGTGGTTGAGTGCTTTGATATGAGGAGAAAATCTTCTGTTGGCAGAATTAACACAGCTGTCTCTCCTGAAGATTTTAATCAGGAGGTCACATCTCTGCAATTCGATGAAAACCAAGGATACCTTATGGCAGTAGGGAGCAGCACAGGAAAGGTAGCAATATATGATCTACGTATGTCTTCCCCTTTGCGAGTTAAGGATCATATGTATGGTAGCCCAATATTAAGTATTAAGTGGCACCAGACACTTAATTCTACTGAACCTAAGCTGATTACTGCTGACAAGCATATAGTGAGAGTTTGGGATCCTAATACAGGAAATAACATGACTAGCATTGAACCAGATGGTGGTACTATCAATGATGTTTGTGTTTTCCGGAACAGTGGTTTGATGTTATTAGCTTTGGACAATAGCCAGATCCCTGCCCACTTTATTCCTGCATTGGGCCCTGCTCCAAAGTGGTGCTCGCATCTTGATAATCTAACGGAAGAAATGGAAGAGAAGACAGAGAATATTGTATATGAAGATTTCAAGTTTTTAACAAAAGATGAGATGGATCGATATGATCTCTCTAAGTACATTGATCAGGGTCTTGTGAGAGCGCATATGCATGGATATGTGATGAAACTTCAGCTATATAAGAAGCTACTAGCTACTAGTGCTGTTGATCCTGAGAATATTCAAGAG ] [+] EMBL AK121983 [ CCTCCAACCTGCTAAAACCCTAGCACCCGCCGCCCCCGACGGCGCCGCTCGACGACGAGTCGCCGGCGTCGGTCGCCGACGAGAGCTAGGGCAAGTGCGGCGGTACAGGGTTTCAGAGGAGGAGGGGAGCATGGCGTCGAACAACGGCGCGGGGACCCTCAGGTCAACCTCCATCAACGGCGTCAAGCTCTACTCCATCACCGGCAACCGCTACGTCGCCCCATGGGTCCTCTCGAAGAAGAAGCGCGCCCTCCGCAAGGACGCAGAGTATCAGCGGAGGCTGGATTTGATCCATGACCTGAGGTTCGAGACCGCCACCACCAAGATCAAGGTGACACCGGATGAGCAGTATGTGATCGCCTCAGGTATTTACCCCCCACAAGTTAAAGTCTATGAATTGAAGGAGTTATCAATGAAGTTTGAGAGGCACATGATTTCAGAAATTGTAGATTTCCAGGTCCTTGGTGATGATTACTCAAAACTTGCATTTTTGTGTGCTGACCGTTCTGTATGCCTGCATGCAAAGTACGGTAGACACTATAGCTTGAGAATTCCAAGAATGGGAAGAGATATGGCATATGATTGCTGGTCTTGTGATTTGCTTTGCGCTGCTTCATCACCAGATGTGTATAGAATCAATTTAGAGCAGGGACGATTCCTTGCATCTCTTTCATCTCAATCTCCAGCAATAAATGTGGTTTCTCGGAGTAACATACATGGGCTCATTGCTTGTGGTGGTGAGGATGGTGTGGTTGAGTGCTTTGATATGAGGAGAAAATCTTCTGTTGGCAGAATTAACACAGCTGTCTCTCCTGAAGATTTTAATCAGGAGGTCACATCTCTGCAATTCGATGAAAACCAAGGATACCTTATGGCAGTAGGGAGCAGCACAGGAAAGGTAGCAATATATGATCTACGTATGTCTTCCCCTTTGCGAGTTAAGGATCATATGTATGGTAGCCCAATATTAAGTATTAAGTGGCACCAGACACTTAATTCTACTGAACCTAAGCTGATTACTGCTGACAAGCATATAGTGAGAGTTTGGGATCCTAATACAGGAAATAACATGACTAGCATTGAACCAGATGGTGGTACTATCAATGATGTTTGTGTTTTCCGGAACAGTGGTTTGATGTTATTAGCTTTGGACAATAGCCAGATCCCTGCCCACTTTATTCCTGCATTGGGCCCTGCTCCAAAGTGGTGCTCGCATCTTGATAATCTAACGGAAGAAATGGAAGAGAAGACAGAGAATATTGTATATGAAGATTTCAAGTTTTTAACAAAAGATGAGATGGATCGATATGATCTCTCTAAGTACATTGATCAGGGTCTTGTGAGAGCGCATATGCATGGATATGTGATGAAACTTCAGCTATATAAGAAGCTACTAGCTACTAGTGCTGTTGATCCTGAGAATATTCAAGAG ] [+] EMBL CB672475 [ CCATCCCCTGAAACAAGCTCTACTCCATCACCGGCAACCGCTACGTCGCCCCATGGGTCCTCTCGAAGAAGAAGCGCGCCCTCCGCAAGGACGCAGAGTATCAGCGGAGGCTGGATTTGATCCATGACCTGAGGTTCGAGACCGCCACCACCAAGATCAAGGTGACACCGGATGAGCAGTATGTGATCGCCTCAGGTATTTACCCCCCACAAGTTAAAGTCTATGAATTGAAGGAGTTATCAATGAAGTTTGAGAGGCACATGATTTCAGAAATTGTAGATTTCCAGGTCCTTGGTGATGATTACTCAAAACTTGCATTTTTGTGTGCTGACCGTTCTGTATGCCTGCATGCAAAGTACGGTAGACACTATAGCTTGAGAATTCCAAGAATGGGAAGAGATATGGCATATGATTGCTGGTCTTGTGATTTGCTTTGCGCTGCTTCATCACCAGATGTGTATAGAATCAATTTAGAGCAGGGACGATTCCTTGCATCTCTTTCATCTCAATCTCCAGCAATAAATGTGGTTTCTCGGAGTAACATACATGGGCTCATTGCTTGTGGTGGTGAGGATGGTGTGGTTGAGTGCTTTGATATGAGGAGAAAATCTTCTGTTGGCAGAATTAACACAGCTGTCTCTCCTGAAGATTTTAATCAGGAGGTCACATCTCTGCAATTCGATGAAAACCAAGGATACCTTATGGCAGTAGGGAGCAGCACAGGAAAGGTAGCAATATATGATCTACGTATGTCTTCCCCTTTGCG ] [-] EMBL CB676260 [ AGGAGGTCACATCTCTGCAATTCGATGAAAACCAAGGATACCTTATGGCAGTAGGGAGCAGCACAGGAAAGGTAGCAATATATGATCTACGTATGTCTTCCCCTTTGCGAGTTAAGGATCATATGTATGGTAGCCCAATATTAAGTATTAAGTGGCACCAGACACTTAATTCTACTGAACCTAAGCTGATTACTGCTGACAAGCATATAGTGAGAGTTTGGGATCCTAATACAGGAAATAACATGACTAGCATTGAACCAGATGGTGGTACTATCAATGATGTTTGTGTTTTCCGGAACAGTGGTTTGATGTTATTAGCTTTGGACAATAGCCAGATCCCTGCCCACTTTATTCCTGCATTGGGCCCTGCTCCAAAGTGGTGCTCGCATCTTGATAATCTAACGGAAGAAATGGAAGAGAAGACAGAGAATATTGTATATGAAGATTTCAAGTTTTTAACAAAAGATGAGATGGATCGATATGATCTCTCTAAGTACATTGATCAGGGTCTTGTGAGAGCGCATATGCATGGATATGTGATGAAACTTCAGCTATATAAGAAGCTACTAGCTACTAGTGCTGTTGATCCTGAGAATATTCAAGAGAAGGTTAAGCAAAAGAAAATAGAAGAACAGAGAAAATCTCGCATAACGCAAGTTGTGAAAATACCAAAGGTTAACAGGCAAATTATGGATAATATACTTAAAGAGGAAGAGGAAATGGATGCTGATTTGGAGAATGATGAAAAATCAGGCATCAAG] consensusID : consensus_7900#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 750 fasta sequence [AATTTTCCCTCCAACCTGCTAAAACCCTAGCACCCGCCGCCCCCGACGGCGCCGCTCGACGACGAGTCGCCGGCGTCGGTCGCCGACGAGAGCTAGGGCAAGTGCGGCGGTACAGGGTTTCAGAGGAGGAGGGGAGCATGGCGTCGAACAACGGCGCGGGGACCCTCAGGTCAACCTCCATCAACGGCGTCAAGCTCTACTCCATCACCGGCAACCGCTACGTCGCCCCATGGGTCCTCTCGAAGAAGAAGCGCGCCCTCCGCAAGGACGCAGAGTATCAGCGGAGGCTGGATTTGATCCATGACCTGAGGTTCGAGACCGCCACCACCAAGATCAAGGTGACACCGGATGAGCAGTATGTGATCGCCTCAGGTATTTACCCCCCACAAGTTAAAGTCTATGAATTGAAGGAGTTATCAATGAAGTTTGAGAGGCACATGATTTCAGAAATTGTAGATTTCCAGGTCCTTGGTGATGATTACTCAAAACTTGCATTTTTGTGTGCTGACCGTTCTGTATGCCTGCATGCAAAGTACGGTAGACACTATAGCTTGAGAATTCCAAGAATGGGAAGAGATATGGCATATGATTGCTGGTCTTGTGATTTGCTTTGCGCTGCTTCATCACCAGATGTGTATAGAATCAATTTAGAGCAGCAATAAATGTGGTTTCTCGGAGTAACATACATGGGCTCATTGCTTGTGGTGGTGAGGATGGTGTGGTTGAGTGCTTTGATATGANGGAGAAATC] [+] EMBL CB676259 [AATTTTCCCTCCAACCTGCTAAAACCCTAGCACCCGCCGCCCCCGACGGCGCCGCTCGACGACGAGTCGCCGGCGTCGGTCGCCGACGAGAGCTAGGGCAAGTGCGGCGGTACAGGGTTTCAGAGGAGGAGGGGAGCATGGCGTCGAACAACGGCGCGGGGACCCTCAGGTCAACCTCCATCAACGGCGTCAAGCTCTACTCCATCACCGGCAACCGCTACGTCGCCCCATGGGTCCTCTCGAAGAAGAAGCGCGCCCTCCGCAAGGACGCAGAGTATCAGCGGAGGCTGGATTTGATCCATGACCTGAGGTTCGAGACCGCCACCACCAAGATCAAGGTGACACCGGATGAGCAGTATGTGATCGCCTCAGGTATTTACCCCCCACAAGTTAAAGTCTATGAATTGAAGGAGTTATCAATGAAGTTTGAGAGGCACATGATTTCAGAAATTGTAGATTTCCAGGTCCTTGGTGATGATTACTCAAAACTTGCATTTTTGTGTGCTGACCGTTCTGTATGCCTGCATGCAAAGTACGGTAGACACTATAGCTTGAGAATTCCAAGAATGGGAAGAGATATGGCATATGATTGCTGGTCTTGTGATTTGCTTTGCGCTGCTTCATCACCAGATGTGTATAGAATCAATTTAGAGCAGCAATAAATGTGGTTTCTCGGAGTAACATACATGGGCTCATTGCTTGTGGTGGTGAGGATGGTGTGGTTGAGTGCTTTGATATGANGGAGAAATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7900#0 AGAATTTTCCCTCCAACCTGCTAAAACCCTAGCACCCGCCGCCCCCGACGGCGCCGCTCG 60 consensus_7900#1 --AATTTTCCCTCCAACCTGCTAAAACCCTAGCACCCGCCGCCCCCGACGGCGCCGCTCG 58 ********************************************************** consensus_7900#0 ACGACGAGTCGCCGGCGTCGGTCGCCGACGAGAGCTAGGGCAAGTGCGGCGGTACAGGGT 120 consensus_7900#1 ACGACGAGTCGCCGGCGTCGGTCGCCGACGAGAGCTAGGGCAAGTGCGGCGGTACAGGGT 118 ************************************************************ consensus_7900#0 TTCAGAGGAGGAGGGGAGCATGGCGTCGAACAACGGCGCGGGGACCCTCAGGTCAACCTC 180 consensus_7900#1 TTCAGAGGAGGAGGGGAGCATGGCGTCGAACAACGGCGCGGGGACCCTCAGGTCAACCTC 178 ************************************************************ consensus_7900#0 CATCAACGGCGTCAAGCTCTACTCCATCACCGGCAACCGCTACGTCGCCCCATGGGTCCT 240 consensus_7900#1 CATCAACGGCGTCAAGCTCTACTCCATCACCGGCAACCGCTACGTCGCCCCATGGGTCCT 238 ************************************************************ consensus_7900#0 CTCGAAGAAGAAGCGCGCCCTCCGCAAGGACGCAGAGTATCAGCGGAGGCTGGATTTGAT 300 consensus_7900#1 CTCGAAGAAGAAGCGCGCCCTCCGCAAGGACGCAGAGTATCAGCGGAGGCTGGATTTGAT 298 ************************************************************ consensus_7900#0 CCATGACCTGAGGTTCGAGACCGCCACCACCAAGATCAAGGTGACACCGGATGAGCAGTA 360 consensus_7900#1 CCATGACCTGAGGTTCGAGACCGCCACCACCAAGATCAAGGTGACACCGGATGAGCAGTA 358 ************************************************************ consensus_7900#0 TGTGATCGCCTCAGGTATTTACCCCCCACAAGTTAAAGTCTATGAATTGAAGGAGTTATC 420 consensus_7900#1 TGTGATCGCCTCAGGTATTTACCCCCCACAAGTTAAAGTCTATGAATTGAAGGAGTTATC 418 ************************************************************ consensus_7900#0 AATGAAGTTTGAGAGGCACATGATTTCAGAAATTGTAGATTTCCAGGTCCTTGGTGATGA 480 consensus_7900#1 AATGAAGTTTGAGAGGCACATGATTTCAGAAATTGTAGATTTCCAGGTCCTTGGTGATGA 478 ************************************************************ consensus_7900#0 TTACTCAAAACTTGCATTTTTGTGTGCTGACCGTTCTGTATGCCTGCATGCAAAGTACGG 540 consensus_7900#1 TTACTCAAAACTTGCATTTTTGTGTGCTGACCGTTCTGTATGCCTGCATGCAAAGTACGG 538 ************************************************************ consensus_7900#0 TAGACACTATAGCTTGAGAATTCCAAGAATGGGAAGAGATATGGCATATGATTGCTGGTC 600 consensus_7900#1 TAGACACTATAGCTTGAGAATTCCAAGAATGGGAAGAGATATGGCATATGATTGCTGGTC 598 ************************************************************ consensus_7900#0 TTGTGATTTGCTTTGCGCTGCTTCATCACCAGATGTGTATAGAATCAATTTAGAGCAGGG 660 consensus_7900#1 TTGTGATTTGCTTTGCGCTGCTTCATCACCAGATGTGTATAGAATCAATTTAGAGCAG-- 656 ********************************************************** consensus_7900#0 ACGATTCCTTGCATCTCTTTCATCTCAATCTCCAGCAATAAATGTGGTTTCTCGGAGTAA 720 consensus_7900#1 -----------------------------------CAATAAATGTGGTTTCTCGGAGTAA 681 ************************* consensus_7900#0 CATACATGGGCTCATTGCTTGTGGTGGTGAGGATGGTGTGGTTGAGTGCTTTGATATGAG 780 consensus_7900#1 CATACATGGGCTCATTGCTTGTGGTGGTGAGGATGGTGTGGTTGAGTGCTTTGATATGAN 741 *********************************************************** consensus_7900#0 GAGAAAATCTTCTGTTGGCAGAATTAACACAGCTGTCTCTCCTGAAGATTTTAATCAGGA 840 consensus_7900#1 GGAGAAATC--------------------------------------------------- 750 * ***** consensus_7900#0 GGTCACATCTCTGCAATTCGATGAAAACCAAGGATACCTTATGGCAGTAGGGAGCAGCAC 900 consensus_7900#1 ------------------------------------------------------------ consensus_7900#0 AGGAAAGGTAGCAATATATGATCTACGTATGTCTTCCCCTTTGCGAGTTAAGGATCATAT 960 consensus_7900#1 ------------------------------------------------------------ consensus_7900#0 GTATGGTAGCCCAATATTAAGTATTAAGTGGCACCAGACACTTAATTCTACTGAACCTAA 1020 consensus_7900#1 ------------------------------------------------------------ consensus_7900#0 GCTGATTACTGCTGACAAGCATATAGTGAGAGTTTGGGATCCTAATACAGGAAATAACAT 1080 consensus_7900#1 ------------------------------------------------------------ consensus_7900#0 GACTAGCATTGAACCAGATGGTGGTACTATCAATGATGTTTGTGTTTTCCGGAACAGTGG 1140 consensus_7900#1 ------------------------------------------------------------ consensus_7900#0 TTTGATGTTATTAGCTTTGGACAATAGCCAGATCCCTGCCCACTTTATTCCTGCATTGGG 1200 consensus_7900#1 ------------------------------------------------------------ consensus_7900#0 CCCTGCTCCAAAGTGGTGCTCGCATCTTGATAATCTAACGGAAGAAATGGAAGAGAAGAC 1260 consensus_7900#1 ------------------------------------------------------------ consensus_7900#0 AGAGAATATTGTATATGAAGATTTCAAGTTTTTAACAAAAGATGAGATGGATCGATATGA 1320 consensus_7900#1 ------------------------------------------------------------ consensus_7900#0 TCTCTCTAAGTACATTGATCAGGGTCTTGTGAGAGCGCATATGCATGGATATGTGATGAA 1380 consensus_7900#1 ------------------------------------------------------------ consensus_7900#0 ACTTCAGCTATATAAGAAGCTACTAGCTACTAGTGCTGTTGATCCTGAGAATATTCAAGA 1440 consensus_7900#1 ------------------------------------------------------------ consensus_7900#0 GAAGGTTAAGCAAAAGAAAATAGAAGAACAGAGAAAATCTCGCATAACGCAAGTTGTGAA 1500 consensus_7900#1 ------------------------------------------------------------ consensus_7900#0 AATACCAAAGGTTAACAGGCAAATTATGGATAATATACTTAAAGAGGAAGAGGAAATGGA 1560 consensus_7900#1 ------------------------------------------------------------ consensus_7900#0 TGCTGATTTGGAGAATGATGAAAAATCAGGCATCAAG 1597 consensus_7900#1 ------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||