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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7904#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 878 fasta sequence
[TTTTTTTTTAACCAAGGATCTGATTCTTTGTATAAATTTCCAGAGTAACTGGTACAGTGAATAAGTTGGCTCATTGGCTGAGTTCTGCTACAAAATACTTTCAGTATGCAGTTTGACTTGCAGCAGTAGTTTCAACCTCAGGTGAGATATTGTGTGAGAGAGGATACTGAATGGCTGGACTGTTTCTCCTGTGCAAAATCTTGGCTCTTAGTTGAGGTTCCTCTGTACAATGGCATCAGGACGCCAAGAAGAAAATAGAAAATTAAGTTACATATAAAGGCAAGAGGAGTATACATGCGGCGAACTACTACTTCGGAGGGCCTTCAATCTGTAGGGNACCAATATACAGTCTTGTCATTTGACAGATGTNAGTACGCCAATTGTAGTATGCTTCCGGGAGTTCTGCCTAANAGGAATGGACGATATCTGCTATTTACATTGAACAAAATTAGTAAGAGCTATTGGTCAAGACAAACTTCAGTGTCCTGAAAATAAATATAACGACTGAAGCAAAAGGTTCAAATGTGGATTCTGAACTCTCAAAGTGCCTGATTCACCTGAGATTCTATAAGCTGCTAACAGGTGAAGTGCTTCAGAACTACACCGAACAAAGATTATACACAGCAAGGCAGCAAGATAATAGACAGCAAGGCAGCAAGCCCCATGCCAGCAATTAGGAAAAAAATGTCACTAGCCAGTAGTGCTACCATCTGAGCTGGGATCAGAGTTTTTCTTTTCTTTTCTTTTGGCCACGTTGAGTTTACAAGCTCAGGAAACAACATTGTGAGCCATGTTGCTTTGACGTTTAAAGGGAGTGAATCTAGCAACTAGAATGCCAATAAACCAGTTCTTAATCTAATAGTAAGTGACTANAGCTG]
[-] EMBL AU056470 [TTTTTTTTTAACCAAGGATCTGATTCTTTGTATAAATTTCCAGAGTAACTGGTACAGTGAATAAGTTGGCTCATTGGCTGAGTTCTGCTACAAAATACTTTCAGTATGCAGTTTGACTTGCAGCAGTAGTTTCAACCTCAGGTGAGATATTGTGTGAGAGAGGATACTGAATGGCTGGACTGTTTCTCCTGTGCAAAATCTTGGCTCTTAGTTGAGGTTCCTCTGTACAATGGCATCAGGACGCCAAGAAGAAAATAGAAAATTAAGTTACATATAAAGGCAAGAGGAGTATACATGCGGCGAACTACTACTTCGGAGGGCCTTCAATCTGTAGGGNACCAATATACAGTCTTGTCATTTGACAGATGTNAGTACGCCAATTGTAGTATGCTTCCGGGAGTTCTGCCTAANAGG ]
[+] EMBL CB666747 [ AATTTCCAGAGTAACTGGTACAGTGAATAAGTTGGCTCATTGGCTGAGTTCTGCTACAAAATACTTTCAGTATGCAGTTTGACTTGCAGCAGTAGTTTCAACCTCAGGTGAGATATTGTGTGAGAGAGGATACTGAATGGCTGGACTGTTTCTCCTGTGCAAAATCTTGGCTCTTAGTTGAGGTTCCTCTGTACAATGGCATCAGGACGCCAAGAAGAAAATAGAAAATTAAGTTACATATAAAGGCAAGAGGAGTATACATGCGGCGAACTACTACTTCGGAGGTCCTTCAATCTGTAGGGTACCAATATACAGTCTTGTCATTTGACAGATGTTAGTACGCCAATTGTAGTATGCTTCCGGGAGTTCTGCCTAACAGGAATGGACGATATCTGCTATTTACATTGAACAAAATTAGTAAGAGCTATTGGTCAAGACAAACTTCAGTGTCCTGAAAATAAATATAACGACTGAAGCAAAAGGTTCAAATGTGGATTCTGAACTCTCAAAGTGCCTGATTCACCTGAGATTCTATAAGCTGCTAACAGGTGAAGTGCTTCAGAACTACACCGAACAAAGATTATACACAGCAAGGCAGCAAGATAATAGACAGCAAGGCAGCAAGCCCCATGCCAGCAATTAGGAAAAAAATGTCACTAGCCAGTAGTGCTACCATCTGAGCTGGGATCAGAGTTTTTCTTTTCTTTTCTTTTGGCCACGTTGAGTTTACAAGCTCAGGAAACAACATTGTGAGCCATGTTGCTTTGACGTTTAAAGGGAGTGAATCTAGCAACTAGAATGCCAATAAACCAGTTCTTAATCTAATAGTAAGTGACTANAGCTG]
consensusID : consensus_7904#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 546 fasta sequence
[ATGGTTATAGTCTTATAGATAGCTCACGGTGCACATCTGAAGAACATGTACATGCGGGAGAAGCTAGTTTAACCAAGGATCTGATTCTTTGTATAAATTTCCAGAGTAACTGGTACAGTGAATAAGTTGGCTCATTGGCTGAGTTCTGCTACAAAATACTTTCAGTATGCAGTTTGACTTGCAGCAGTAGTTTCAACCTCAGGTGAGATATTGTGTGAGAGAGGATACTGAATGGCTGGACTGTTTCTCCTGTGCAAAATCTTGGCTCTTAATTGAGGTTCCTCTGTACAATGGCATCAGGACGCCAAGAAGAAAATAGAAAATTAAGTTACATATAAAGGCAAGAGGAGTATACATGCGGCGAACTACTACTTCGGAGGTCCTTCAATCTGTAGGGTACCAATATACAGTCTTGTCATTTGACAGATGTTAGTACGCCAATTGTAGTATGCTTCCGGGAGTTCTGCCTAACAGGAATGGACGATATCTTTGCCAACTTGAATTGTGTTGATGACAACAAAGATTCCATCCATTGCCAACTTTAGC]
[+] EMBL CB672101 [ATGGTTATAGTCTTATAGATAGCTCACGGTGCACATCTGAAGAACATGTACATGCGGGAGAAGCTAGTTTAACCAAGGATCTGATTCTTTGTATAAATTTCCAGAGTAACTGGTACAGTGAATAAGTTGGCTCATTGGCTGAGTTCTGCTACAAAATACTTTCAGTATGCAGTTTGACTTGCAGCAGTAGTTTCAACCTCAGGTGAGATATTGTGTGAGAGAGGATACTGAATGGCTGGACTGTTTCTCCTGTGCAAAATCTTGGCTCTTAATTGAGGTTCCTCTGTACAATGGCATCAGGACGCCAAGAAGAAAATAGAAAATTAAGTTACATATAAAGGCAAGAGGAGTATACATGCGGCGAACTACTACTTCGGAGGTCCTTCAATCTGTAGGGTACCAATATACAGTCTTGTCATTTGACAGATGTTAGTACGCCAATTGTAGTATGCTTCCGGGAGTTCTGCCTAACAGGAATGGACGATATCTTTGCCAACTTGAATTGTGTTGATGACAACAAAGATTCCATCCATTGCCAACTTTAG ]
[-] EMBL AU101922 [ tttttttTTTAACCAAGGATCTGATTCTTTGTATAAATTTCCAGAGTAACTGGTACAGTGAATAAGTTGGCTCATTGGCTGAGTTCTGCTACAAAATACTTTCAGTATGCAGTTTGACTTGCAGCAGTAGTTTCAACCTCAGGTGAGATATTGTGTGAGAGAGGATACTGAATGGCTGGACTGTTTCTCCTGTGCAAAATCTTGGCTCTTAGTTGAGGTTCCTCTGTACAATGGCATCAGGACGCCAAGAAGAAAATAGAAAATTAAGTTACATATAAAGGCAAGAGGAGTATACATGCGGCGAACTACTACTTCGGAGGTCCTTCAATCTGTAGGGTACCAATATACAGTCTTGTCATTTGACAGATGTTAGTACGCCAATTGTAGTATGCTTCCGGGAGTTCTGCCTAACAGGAATGGACGATATCTTTGCCAACTTGAATTGTGTTGATGACAACAAAGATTCCATCCATTGCCAACTTTAGC]
consensusID : consensus_7904#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 320 fasta sequence
[TTTTTTTTTTTTTTTTTTTTTTTTGAGCTGGGATCAAAGTTTTTCTTTTCTTTTCTTTTGGCCACGTTGAGTTTACAAGCTCAGGAAACAACATTGTGAGCCATGTTGCTTTGACGTTTAAAGGGAGTGAATCTAGCAACTAGAATGCCAATAAACCAGTTCTTAATCTAATAGTAAGTGACTAAAGCTGCAAATGATGTAGGACAGTCTTGACTTAACGTATAATAAAAAGTTATGAATTGTGACAAGTGACCATGCATACCTTTGCCAACTTGAATTGTGTTGATGACAACAAAGATTCCATCCATTGCCAACTTTAG]
[+] EMBL CF308271 [TTTTTTTTTTTTTTTTTTTTTTTTGAGCTGGGATCAAAGTTTTTCTTTTCTTTTCTTTTGGCCACGTTGAGTTTACAAGCTCAGGAAACAACATTGTGAGCCATGTTGCTTTGACGTTTAAAGGGAGTGAATCTAGCAACTAGAATGCCAATAAACCAGTTCTTAATCTAATAGTAAGTGACTAAAGCTGCAAATGATGTAGGACAGTCTTGACTTAACGTATAATAAAAAGTTATGAATTGTGACAAGTGACCATGCATACCTTTGCCAACTTGAATTGTGTTGATGACAACAAAGATTCCATCCATTGCCAACTTTAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7904#0 ------------------------------------------------------------
consensus_7904#1 ATGGTTATAGTCTTATAGATAGCTCACGGTGCACATCTGAAGAACATGTACATGCGGGAG 60
consensus_7904#2 ------------------------------------------------------------
consensus_7904#0 -TTTTTTTTTAACCAAGGATCTGATTCTTTGTATAAATTTCCAGAGTAACTGGTACAGTG 59
consensus_7904#1 AAGCTAGTTTAACCAAGGATCTGATTCTTTGTATAAATTTCCAGAGTAACTGGTACAGTG 120
consensus_7904#2 ------------------------------------------------------------
consensus_7904#0 AATAAGTTGGCTCATTGGCTGAGTTCTGCTACAAAATACTTTCAGTATGCAGTTTGACTT 119
consensus_7904#1 AATAAGTTGGCTCATTGGCTGAGTTCTGCTACAAAATACTTTCAGTATGCAGTTTGACTT 180
consensus_7904#2 ------------------------------------------------------------
consensus_7904#0 GCAGCAGTAGTTTCAACCTCAGGTGAGATATTGTGTGAGAGAGGATACTGAATGGCTGGA 179
consensus_7904#1 GCAGCAGTAGTTTCAACCTCAGGTGAGATATTGTGTGAGAGAGGATACTGAATGGCTGGA 240
consensus_7904#2 -----------------------------------------------TTTTTTTTTTTTT 13
* * *
consensus_7904#0 CTGTTTCTCCTGTGC-AAAATCTTGGCTCTTAGTTGAGGTTCCTCTG--TACAATGGCAT 236
consensus_7904#1 CTGTTTCTCCTGTGC-AAAATCTTGGCTCTTAATTGAGGTTCCTCTG--TACAATGGCAT 297
consensus_7904#2 TTTTTTTTTTTGAGCTGGGATCAAAGTTTTTCTTTTCTTTTCTTTTGGCCACGTTGAGTT 73
* *** * ** ** *** * * ** ** *** * ** ** ** *
consensus_7904#0 CAGGACGCCAAGAAGAAA-ATAGAAAATTAAGTTACATATAAAGGCAAGAGGAGTATACA 295
consensus_7904#1 CAGGACGCCAAGAAGAAA-ATAGAAAATTAAGTTACATATAAAGGCAAGAGGAGTATACA 356
consensus_7904#2 TACAAGCTCAGGAAACAACATTGTGAGCCATGTTGCTTTGACGTTTAAAGGGAGTGAATC 133
* * ** *** ** ** * * * *** * * * ** ***** *
consensus_7904#0 T-GCGGCGA-ACTACTACTTCGGAGGGCCTTCAATCTGTAGGGNACCAATATACAGTCTT 353
consensus_7904#1 T-GCGGCGA-ACTACTACTTCGGAGGTCCTTCAATCTGTAGGGTACCAATATACAGTCTT 414
consensus_7904#2 TAGCAACTAGAATGCCAATAAACCAGTTCTTAATCTAATAGTAAGTGACTAAAGCTGCAA 193
* ** * * * * * * * * *** * *** * ** * *
consensus_7904#0 GTCATTTGACAGATGTNAGTACGCCAATTGTAGTATGCTTCCGGGAGTTCTGCCTAANAG 413
consensus_7904#1 GTCATTTGACAGATGTTAGTACGCCAATTGTAGTATGCTTCCGGGAGTTCTGCCTAACAG 474
consensus_7904#2 ATGATGTAGGACA-GTCTTGACTTAACGTATAATAAAAAGTTATGAATTGTGACAAGTGA 252
* ** * * * ** ** * * ** ** ** ** ** * *
consensus_7904#0 GAATGGACGATATCTG---CTATTTACATTGAACAAAATTAGTAAGAGCTATTGGTCAAG 470
consensus_7904#1 GAATGGACGATATCTTTGCCAACTTGAATTGTGTTGATGACAACAAAGATTCCATCCATT 534
consensus_7904#2 CCATGCA---TACCTTTGCCAACTTGAATTGTGTTGATGACAACAAAGATTCCATCCATT 309
*** * ** ** * * ** **** * * ** * **
consensus_7904#0 ACAAACTTCAGTGTCCTGAAAATAAATATAACGACTGAAGCAAAAGGTTCAAATGTGGAT 530
consensus_7904#1 GCCAACTTTAGC------------------------------------------------ 546
consensus_7904#2 GCCAACTTTAG------------------------------------------------- 320
* ***** **
consensus_7904#0 TCTGAACTCTCAAAGTGCCTGATTCACCTGAGATTCTATAAGCTGCTAACAGGTGAAGTG 590
consensus_7904#1 ------------------------------------------------------------
consensus_7904#2 ------------------------------------------------------------
consensus_7904#0 CTTCAGAACTACACCGAACAAAGATTATACACAGCAAGGCAGCAAGATAATAGACAGCAA 650
consensus_7904#1 ------------------------------------------------------------
consensus_7904#2 ------------------------------------------------------------
consensus_7904#0 GGCAGCAAGCCCCATGCCAGCAATTAGGAAAAAAATGTCACTAGCCAGTAGTGCTACCAT 710
consensus_7904#1 ------------------------------------------------------------
consensus_7904#2 ------------------------------------------------------------
consensus_7904#0 CTGAGCTGGGATCAGAGTTTTTCTTTTCTTTTCTTTTGGCCACGTTGAGTTTACAAGCTC 770
consensus_7904#1 ------------------------------------------------------------
consensus_7904#2 ------------------------------------------------------------
consensus_7904#0 AGGAAACAACATTGTGAGCCATGTTGCTTTGACGTTTAAAGGGAGTGAATCTAGCAACTA 830
consensus_7904#1 ------------------------------------------------------------
consensus_7904#2 ------------------------------------------------------------
consensus_7904#0 GAATGCCAATAAACCAGTTCTTAATCTAATAGTAAGTGACTANAGCTG 878
consensus_7904#1 ------------------------------------------------
consensus_7904#2 ------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||