|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7907#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1803 fasta sequence
[CAAGCAACTCTCGGTGGTGTGGTGTCCACTGTGCAGCTCCCGTGCAGGCGTTCCGCTTTGATGGAAACCGCCGCGGCCGTGGTGTGCCGAGGCGGCGGGCTGCGCGCGCCGGCGCGTCGCGGTGGCAGTGACAGCAGCACGACGCGCGCGGGTGGCGTTGCTGCCTCCCCGGCGCCCGCCACCACCGCGCGACGGAGGCCGCTGCTCGTCGCGTCGCTCGGGGAGCCCCTCATCACGGCGCAACCCTTGTCGTCGTCCCTGGGAGATGGCGCCGCGGTACACGAGACGCTGGCTCGCTCCGATTCGGTGATCCCGTCGCTGAAGCCGTCTCACTGCGTTGATCACTCGGTCCAGGTTGACGCCGACGAGGAGACCGGCTCCACCAAGACACTCCCACCTCCTGATGACGTTCCTACGAAGACAGTGCACGTCAAATTCGTGCTGCAAAAGCGGTGCGCGTTCGGGCAGCGCTTCCTCGTCGTCGGCGACGTCGCGGCGCTCGGTCTCTGGAATCCGGCGAAGGCGGCTGCTCTGGATTGGTCCGAAGACCACGTGTGGACAGTGAAGAAGGAATTGCCAGCAGAAAGATCGATCGAGTTCAAGTTCTTGCTGCAAGATCGATCGGGACATGTCGAATGGCAGCACGGTCGTAACAGAATACTGCATGTAGCTGACACCTCGAACACCTTGATTGTCTGCGAGGACTGGGACGAGGCGAAGAATCAGCAAGTATCAGAAGAGATTGGTGACGCAGATGGGATATTTTCAGGAAGCGATGGCGTCTTCCAGGAAGATGAGCTTCAACTGGGTGAAGAACAAGAGACCAACAAGGGTGTGACTGTAGGTGTGGATGATGCAAAATCGGCTTTAGTCACTTATATTTACAGGGAAATGATGGGAGCAAACGACGCGATCCAGCCACAGTTAGCATTGGACAAACACCACAAGATTCCAGATGAGCTTAGTGGGGAGGCAAACATGGCAGCACAAGATGGCAATCACACTGCTACTGCAGCCGCAGCTTCTGGTTTTGCTGGAAGCAACGGTGAGGATGCCATCTTGCACAAGGAGGGCGATCCAGTAGAGAATAATAGGCTGGGGCTGGCCAGCATTTTCTTCAATGACATGGCCTGGACCAGGAAAGCCCTGCAGCAGTTGCTCCGAAGCCTTGGTTTCCAAATCGGCACGAGAAAAACATGAAGTAAGCATCAGAGACGCT-GACCTGCAGTTTTGGCTGATCAC-ACGGTCTCGCGGTGCCTTCA-TTCAAAACTCGAAAGCTTCTACATGCTGCAAACCTACAAGGAACAAGTGTATTGAGAACTGCAACAAAAAACCCTTTACGTTGCTAAGGTCTGCAACACCAGCAGTACTTGTTAGCAGTGCAAAAAGAGCAGGAAAGCTGTTAGCAGTGCAAGTATGTTTAGGACCAGTAATGACTAAGCT-ACCAAAAAACTCAATTAGTGAAATGCATATTGTGGTTAAATTTATCTGTTCGATAAATTCTGTAGAATACATCTAGAATAAGAGCCAGGAAAAGCTGAAAGTCTGGAGATTTGGCATAACATGTGCTCCATAACCA-CACGTATAAGCTCAACCACATGTACTTTAAT-CCACCAGATTTACGTTCATTTCTC-ATCATTTCAGTTGTAATGCTAATATGCTCTTGTTCTGGTGATCTAGTAAAAATGATGTCCATGATTTGCAAAGCTTTCTTTAATTTACATNAGAAAGCTGGCAGCATTTAAAACATGTAAACGTGAAATATCAGCGTGGACATTCCACTTTAATTNAAAAAAAAAAAAA]
[+] EMBL AK107570 [CAAGCAACTCTCGGTGGTGTGGTGTCCACTGTGCAGCTCCCGTGCAGGCGTTCCGCTTTGATGGAAACCGCCGCGGCCGTGGTGTGCCGAGGCGGCGGGCTGCGCGCGCCGGCGCGTCGCGGTGGCAGTGACAGCAGCACGACGCGCGCGGGTGGCGTTGCTGCCTCCCCGGCGCCCGCCACCACCGCGCGACGGAGGCCGCTGCTCGTCGCGTCGCTCGGGGAGCCCCTCATCACGGCGCAACCCTTGTCGTCGTCCCTGGGAGATGGCGCCGCGGTACACGAGACGCTGGCTCGCTCCGATTCGGTGATCCCGTCGCTGAAGCCGTCTCACTGCGTTGATCACTCGGTCCAGGTTGACGCCGACGAGGAGACCGGCTCCACCAAGACACTCCCACCTCCTGATGACGTTCCTACGAAGACAGTGCACGTCAAATTCGTGCTGCAAAAGCGGTGCGCGTTCGGGCAGCGCTTCCTCGTCGTCGGCGACGTCGCGGCGCTCGGTCTCTGGAATCCGGCGAAGGCGGCTGCTCTGGATTGGTCCGAAGACCACGTGTGGACAGTGAAGAAGGAATTGCCAGCAGAAAGATCGATCGAGTTCAAGTTCTTGCTGCAAGATCGATCGGGACATGTCGAATGGCAGCACGGTCGTAACAGAATACTGCATGTAGCTGACACCTCGAACACCTTGATTGTCTGCGAGGACTGGGACGAGGCGAAGAATCAGCAAGTATCAGAAGAGATTGGTGACGCAGATGGGATATTTTCAGGAAGCGATGGCGTCTTCCAGGAAGATGAGCTTCAACTGGGTGAAGAACAAGAGACCAACAAGGGTGTGACTGTAGGTGTGGATGATGCAAAATCGGCTTTAGTCACTTATATTTACAGGGAAATGATGGGAGCAAACGACGCGATCCAGCCACAGTTAGCATTGGACAAACACCACAAGATTCCAGATGAGCTTAGTGGGGAGGCAAACATGGCAGCACAAGATGGCAATCACACTGCTACTGCAGCCGCAGCTTCTGGTTTTGCTGGAAGCAACGGTGAGGATGCCATCTTGCACAAGGAGGGCGATCCAGTAGAGAATAATAGGCTGGGGCTGGCCAGCATTTTCTTCAATGACATGGCCTGGACCAGGAAAGCCCTGCAGCAGTTGCTCCGAAGCCTTGGTTTCCAAATCGGCACGAGAAAAACATGAAGTAAGCATCAGAGACGCT GACCTGCAGTTTTGGCTGATCAC ACGGTCTCGCGGTGCCTTCA TTCAAAACTCGAAAGCTTCTACATGCTGCAAACCTACAAGGAACAAGTGTATTGAGAACTGCAACAAAAAACCCTTTACGTTGCTAAGGTCTGCAACACCAGCAGTACTTGTTAGCAGTGCAAAAAGAGCAGGAAAGCTGTTAGCAGTGCAAGTATGTTTAGGACCAGTAATGACTAAGCT ACCAAAAAAC ]
[-] EMBL CB651078 [ AAGTATCAGAAGAGATTGGTGACGCAGATGGGATATTTTCAGGAAGCGATGGCGTCTTCCAGGAAGATGAGCTTCAACTGGGTGAAGAACAAGAGACCAACAAGGGTGTGACTGTAGGTGTGGATGATGCAAAATCGGCTTTAGTCACTTATATTTACAGGGAAATGATGGGAGCAAACGACGCGATCCAGCCAC AGCATTGGACAAACACCACAAGATTCCAGATGAGCTTAGTGGGGAGGCAAACATGGCAGCACAAGATGGCAATCACACTGCTACTGCAGCCGCAGCTTCTGGTTTTGCTGGAAGCAACGGTGAGGATGCCATCTTGCACAAGGAGGGCGATCCAGTAGAGAATAATAGGCTGGGGCTGGCCAGCATTTTCTTCAATGACATGGCCTGGACCAGGAAAGCCCTGCAGCAGTTGCTCCGAAGCCTTGGTTTCCAAATCGGCACGAGAAAAACATGAAGTAAGCATCAGAGACGCT GACCTGCAGTTTTGGCTGATCAC ACGGTCTCGCGGTGCCTTCA TTCAAAACTCGAAAGCTTCTACATGCTGCAAACCTACAAGGAACAAGTGTATTGAGAACTGCAACAAAAAACCCTTTACGTTGCTAAGGTCTGCAACACCAGCAGTACTTGTTAGCAGTGCAAAAAGAGCAGGAAAGCTGTTAGCAGTGCAAGTATGTTTAGGACCAGTAATGACTAAGCT ACCAAAAAACTCAATTAGTGAAATGCATATTGTGGTTAAATT ]
[+] EMBL BQ907891 [ AGCATCAGAGACGCTGGACCTGCAGTTTTGGCTGATCACAACGGTCTCGCGGTGCCTTCAGTTCAAAACTCGAAAGCTTCTACATGCTGCAAACCTACAAGGAACAAGTGTATTGAGAACTGCAACNAAAAACCCTTTACGTTGCTAAGGTCTGCAACACCAGCAGTACTTGTTAGCAGTGC AAAAGAGCAGGAAAGCTGTTAGCAGTGCAAGTATGTTTAGGACCAGTAATGACTAAGCTGACC AAAAACTCAATTAGTGAAATGCATATTGTGGTTAAATTTATCTGTTCGATAAATTCTGTAGAATACATCTAGAATAAGAGCCAGGAAAAGCTGAAAGTCTGGAGATTTGGCATAACATGTGCTCCATAACCA CACGTATAAGCTCAACCACATGTACTTTAAT CCACCAGATTTACGTTCATTTCTC ATCATTTCAGTTGTAATGCTAATATGCTCTTGTTCTGGTGATCTAGTAAAAATGATGTCCATGATTTGCAAA ]
[+] EMBL AU032829 [ GGCATNACATGTGCTCCATAACCACCACGTATAAGCTCAACCACATGTNCTTTAATNCCACCAGATTTNCGTTNATNTCTCAATCATTTCAGTNGTAATGCTAATATGCTCTTGTTCTGGTGATCTAGTAAANATGATGTCCATGATTTGCAATGCTTTCTTTAATTTACATNAGAAAGCTGGCAGCATTTAAAACATGTAAACGTGAAATATCAGCGTGGACATTCCACTTTAATTNAAAAAAAAAAAAA]
consensusID : consensus_7907#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 446 fasta sequence
[AGGNATTGCCAGCAGAAAGATCGATCGAGTTCAAGTTCTTGCTGCAAGATCGATCGGGACATGTCGAATGGCAGCACGGTCGTAACAGAATACTGCATGTAGCTGACACCTCGAACACCTTGATTGTCTGCGAGGACTGGGACGAGGCGAAGAATCAGCAAGTATCAGAAGAGATTGGTGACGCAGATGGGATATTTTCAGGAAGCGATGGCGTCTTCCAGGAAGATGAGCTTCAACTGGGTGAAGNACAAGAGACCAACAAGGGTGTGACTGTAGGTGTGGATGATGCAAAATCGGCTTTAGTCACTTATATTTACAGGGAAATGATGGGAGCAAACGACGCGATCCAGCCACAGGTAAGTTGCCTGGTGACAGTATTGTTCTGTGTAAAAGGGCAGCAAACATTTATGTNCAACAATATACTACTCCCTCAGTATTTTAATGTA]
[+] EMBL OSS14993A [AGGNATTGCCAGCAGAAAGATCGATCGAGTTCAAGTTCTTGCTGCAAGATCGATCGGGACATGTCGAATGGCAGCACGGTCGTAACAGAATACTGCATGTAGCTGACACCTCGAACACCTTGATTGTCTGCGAGGACTGGGACGAGGCGAAGAATCAGCAAGTATCAGAAGAGATTGGTGACGCAGATGGGATATTTTCAGGAAGCGATGGCGTCTTCCAGGAAGATGAGCTTCAACTGGGTGAAGNACAAGAGACCAACAAGGGTGTGACTGTAGGTGTGGATGATGCAAAATCGGCTTTAGTCACTTATATTTACAGGGAAATGATGGGAGCAAACGACGCGATCCAGCCACAGGTAAGTTGCCTGGTGACAGTATTGTTCTGTGTAAAAGGGCAGCAAACATTTATGTNCAACAATATACTACTCCCTCAGTATTTTAATGTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7907#0 CAAGCAACTCTCGGTGGTGTGGTGTCCACTGTGCAGCTCCCGTGCAGGCGTTCCGCTTTG 60
consensus_7907#1 ------------------------------------------------------------
consensus_7907#0 ATGGAAACCGCCGCGGCCGTGGTGTGCCGAGGCGGCGGGCTGCGCGCGCCGGCGCGTCGC 120
consensus_7907#1 ------------------------------------------------------------
consensus_7907#0 GGTGGCAGTGACAGCAGCACGACGCGCGCGGGTGGCGTTGCTGCCTCCCCGGCGCCCGCC 180
consensus_7907#1 ------------------------------------------------------------
consensus_7907#0 ACCACCGCGCGACGGAGGCCGCTGCTCGTCGCGTCGCTCGGGGAGCCCCTCATCACGGCG 240
consensus_7907#1 ------------------------------------------------------------
consensus_7907#0 CAACCCTTGTCGTCGTCCCTGGGAGATGGCGCCGCGGTACACGAGACGCTGGCTCGCTCC 300
consensus_7907#1 ------------------------------------------------------------
consensus_7907#0 GATTCGGTGATCCCGTCGCTGAAGCCGTCTCACTGCGTTGATCACTCGGTCCAGGTTGAC 360
consensus_7907#1 ------------------------------------------------------------
consensus_7907#0 GCCGACGAGGAGACCGGCTCCACCAAGACACTCCCACCTCCTGATGACGTTCCTACGAAG 420
consensus_7907#1 ------------------------------------------------------------
consensus_7907#0 ACAGTGCACGTCAAATTCGTGCTGCAAAAGCGGTGCGCGTTCGGGCAGCGCTTCCTCGTC 480
consensus_7907#1 ------------------------------------------------------------
consensus_7907#0 GTCGGCGACGTCGCGGCGCTCGGTCTCTGGAATCCGGCGAAGGCGGCTGCTCTGGATTGG 540
consensus_7907#1 ------------------------------------------------------------
consensus_7907#0 TCCGAAGACCACGTGTGGACAGTGAAGAAGGAATTGCCAGCAGAAAGATCGATCGAGTTC 600
consensus_7907#1 ----------------------------AGGNATTGCCAGCAGAAAGATCGATCGAGTTC 32
*** ****************************
consensus_7907#0 AAGTTCTTGCTGCAAGATCGATCGGGACATGTCGAATGGCAGCACGGTCGTAACAGAATA 660
consensus_7907#1 AAGTTCTTGCTGCAAGATCGATCGGGACATGTCGAATGGCAGCACGGTCGTAACAGAATA 92
************************************************************
consensus_7907#0 CTGCATGTAGCTGACACCTCGAACACCTTGATTGTCTGCGAGGACTGGGACGAGGCGAAG 720
consensus_7907#1 CTGCATGTAGCTGACACCTCGAACACCTTGATTGTCTGCGAGGACTGGGACGAGGCGAAG 152
************************************************************
consensus_7907#0 AATCAGCAAGTATCAGAAGAGATTGGTGACGCAGATGGGATATTTTCAGGAAGCGATGGC 780
consensus_7907#1 AATCAGCAAGTATCAGAAGAGATTGGTGACGCAGATGGGATATTTTCAGGAAGCGATGGC 212
************************************************************
consensus_7907#0 GTCTTCCAGGAAGATGAGCTTCAACTGGGTGAAGAACAAGAGACCAACAAGGGTGTGACT 840
consensus_7907#1 GTCTTCCAGGAAGATGAGCTTCAACTGGGTGAAGNACAAGAGACCAACAAGGGTGTGACT 272
********************************** *************************
consensus_7907#0 GTAGGTGTGGATGATGCAAAATCGGCTTTAGTCACTTATATTTACAGGGAAATGATGGGA 900
consensus_7907#1 GTAGGTGTGGATGATGCAAAATCGGCTTTAGTCACTTATATTTACAGGGAAATGATGGGA 332
************************************************************
consensus_7907#0 GCAAACGACGCGATCCAGCCACAGTTAGCATTGGACAAACACCACAAGATTCCAGATGAG 960
consensus_7907#1 GCAAACGACGCGATCCAGCCACAGGTAA-GTTGCCTGGTGACAGTATTGTTCTGTGTAAA 391
************************ ** *** ** * *** * *
consensus_7907#0 CTTAGTGGGGAGGCAAACATGGCAGCACAAGATGGCAATCACACTGCTACTGCAGCCGCA 1020
consensus_7907#1 ------AGGGCAGCAAACATTTATGTNCAA-----CAAT-ATACTACTCCCTCAGTA--- 436
*** ******** * *** **** * *** ** * ***
consensus_7907#0 GCTTCTGGTTTTGCTGGAAGCAACGGTGAGGATGCCATCTTGCACAAGGAGGGCGATCCA 1080
consensus_7907#1 --TTTTAATGTA------------------------------------------------ 446
** * * *
consensus_7907#0 GTAGAGAATAATAGGCTGGGGCTGGCCAGCATTTTCTTCAATGACATGGCCTGGACCAGG 1140
consensus_7907#1 ------------------------------------------------------------
consensus_7907#0 AAAGCCCTGCAGCAGTTGCTCCGAAGCCTTGGTTTCCAAATCGGCACGAGAAAAACATGA 1200
consensus_7907#1 ------------------------------------------------------------
consensus_7907#0 AGTAAGCATCAGAGACGCTGACCTGCAGTTTTGGCTGATCACACGGTCTCGCGGTGCCTT 1260
consensus_7907#1 ------------------------------------------------------------
consensus_7907#0 CATTCAAAACTCGAAAGCTTCTACATGCTGCAAACCTACAAGGAACAAGTGTATTGAGAA 1320
consensus_7907#1 ------------------------------------------------------------
consensus_7907#0 CTGCAACAAAAAACCCTTTACGTTGCTAAGGTCTGCAACACCAGCAGTACTTGTTAGCAG 1380
consensus_7907#1 ------------------------------------------------------------
consensus_7907#0 TGCAAAAAGAGCAGGAAAGCTGTTAGCAGTGCAAGTATGTTTAGGACCAGTAATGACTAA 1440
consensus_7907#1 ------------------------------------------------------------
consensus_7907#0 GCTACCAAAAAACTCAATTAGTGAAATGCATATTGTGGTTAAATTTATCTGTTCGATAAA 1500
consensus_7907#1 ------------------------------------------------------------
consensus_7907#0 TTCTGTAGAATACATCTAGAATAAGAGCCAGGAAAAGCTGAAAGTCTGGAGATTTGGCAT 1560
consensus_7907#1 ------------------------------------------------------------
consensus_7907#0 AACATGTGCTCCATAACCACACGTATAAGCTCAACCACATGTACTTTAATCCACCAGATT 1620
consensus_7907#1 ------------------------------------------------------------
consensus_7907#0 TACGTTCATTTCTCATCATTTCAGTTGTAATGCTAATATGCTCTTGTTCTGGTGATCTAG 1680
consensus_7907#1 ------------------------------------------------------------
consensus_7907#0 TAAAAATGATGTCCATGATTTGCAAAGCTTTCTTTAATTTACATNAGAAAGCTGGCAGCA 1740
consensus_7907#1 ------------------------------------------------------------
consensus_7907#0 TTTAAAACATGTAAACGTGAAATATCAGCGTGGACATTCCACTTTAATTNAAAAAAAAAA 1800
consensus_7907#1 ------------------------------------------------------------
consensus_7907#0 AAA 1803
consensus_7907#1 ---
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||