These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7908#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1611 fasta sequence [AAACTGAAAACCCAAAAGCCCAAAACCCTAGCTCTGGTGCCCGGCTCGGCTACCCCGTCGCCACCGCCGTTCGTTTCCCAAATTCACACAAGCCATGGTGCTAGGCCTCTACGCCTTCGCCGACATCGCCGCCGACGGCGCCCCCCACCTCAACTCCGCCGCCGGGGAGGAGCTCGTCCGCGTCGAGCGCGCCGCTGCCGTCGCCCTCGGCTCCCGCGCGCCGGAGCCCCCCGGGACCCTGTTCATCACCACCAGGAGGGTGATTTGGGTCAGTGAGGTGGAGAAGGGCAAGGCCTACGCGGTGGATTTCCTCGCCGTCTCGCTCCACGCCGTCTCTCGCGATCCGGAGGCGTACTCCTCCCCCTGCATCTACACGCAGATTGAGACAGAAGATGGTTCTGATGAGGAGTCCGATGAATCAGACTCCGAAGTAAATGTGGAAACAGAGCTATCGAAAGTCACTGAGATGCGTATCATACCATCTGATCCTTGTCAGTGTATCCTTTTTACAGTANATTGTCTGATGTAGGAGCATTTATTGGGTTTCCTTGTATAAATCTACCTCTGATGCTTGCATACTAANATTTGATATGAGTGCAGGTTTACATGAAATAACTATCATTTCTAATGCTCTATGTTCATTTTTCATTAGCTCTTTATTTTTAATTTATTCTCATGACTGTAGCAACTAATAGTCATGATTAGATTTGTTTATTCTTGAAGAGTAGGTCTTCACTCTAGAGGGTACTACTTTAAGAATGTAATGTGTGCATTCTGTTCCTTCACAAGTAAAAATTTGCTTGTCTTATGTTATTCAGTTACAAATGGTTCTCTGTTGGGA-TTAATAGCTAATCAAGAATAAACTACCTTGCATAATTAGTATCATACTGCAGATCATCATGGCAGATATATTTTTTATTT-CAGCAGGTTGAAATGCTATTTATTTGAAGAATTGACTAATACTATTTCTTGAAGCATTTGTATCTTCTATTATATATTCACATTATATCTTGGATCCTTGACAGAAGTTTCAGTGGATGGACTCTTTGAAGCATTCTCACATTGTGCTGAATTGAACCCCGATCCTAATGCTGAGAGTGATGAAGAGAATGGCTGGGCTCATAGAGATGAAGGTGATGAAGATATGACTGGTGGAAGTGATGCTGAATGTGAGTTTTCAGATGTCAACCCGATAGGTCAAACTGATGAACATGATATTACTCATGCTGTAGTTGAGCTTCAGATCAATGACCAACGTTTTGAGGATGCAGAGGAAGCAGAACATGAGACGCATGGAAATGGACACTAATGCAGATTAACTCCTTTGGGCCACCTTGTAAACTTGCATCAATGGCAACGTATGGGAGAAAAAAGGTCTTGCTACTGGTCAAGAAAAATGTAAGCTGAAAGCATGCTGGAGGTCTTTGTATGCGTTGTCTTCTGTAAAATACATGTATGATCATGCAACTTCATATTCAGAGATATTTTGACAATGTGCTCATGGAAAACATCCATACTTTGTAAGTGTTCAAGCTTAATTGTCAGATTTTTTTTTGTTTACATCCTTGATCGACCAAAGATGTATGCTGATAGCTGAGCAACAAACATTTC] [+] EMBL CA756175 [AAACTGAAAACCCAAAAGCCCAAAACCCTAGCTCTGGTGCCCGGCTCGGCTACCCCGTCGCCACCGCCGTTCGTTTCCCAAATTCACACAAGCCATGGTGCTAGGCCTCTACGCCTTCGCCGACATCGCCGCCGACGGCGCCCCCCACCTCAACTCCGCCGCCGGGGAGGAGCTCGTCCGCGTCGAGCGCGCCGCTGCCGTCGCCCTCGGCTCCCGCGCGCCGGAGCCCCCCGGGACCCTGTTCATCACCACCAGGAGGGTGATTTGGGTCAGTGAGGTGGAGAAGGGCAAGGCCTACGCGGTGGATTTCCTCGCCGTCTCGCTCCACGCCGTCTCTCGCGATCCGGAGGCGTACTCCTCCCCCTGCATCTACACGCAGATTGAGACAGAAGATGGTTCTGATGAGGAGTCCGATGAATCAGACTCCGAAGTAAATGTGGAAACAGAGCTATCGAAAGTCACTGAGATGCGTATCATACCATCTGATCCTTGTCAGTGTATCCTTTTTACAGTANATTGTCTGATGTAGGAGCATTTATTGGGTTTCCTTGTATAAATCTACCTCTGATGCTTGCATACTAANATTTGATATGAGTGCAGGTTTAC ] [+] EMBL OS0175A [ CGCCGTTCGTTTCCCAAATTCACACAAGCCATGGTGCTAGGCCTCTACGCCTTCGCCGACATCGCCGCCGACG GCCCCCCACCTCAACTCCGCCGCCGGGGAGGAGCTCGTCCGCGTCGAG GCGCCGCTGCCGTCGCCCTCGGNTCCCGCGCGNCGGAGCCCCCCGGNNCCCTNTTCATCACCACCAGGAGGGTGATTTGGGTCAGTNAGGTGGAGAAGGGCAAGGCCTACGCGGTGGATTTCCTCGCCGTCTCGCTCCACGACGTCTCTCGNGATCCGGAGGCGTACTCCTNCCCCTGCATCTACACG ] [+] EMBL CB630837 [ GCCTCTACGCCTTCGCCGACATCGCCGCCGACGGCGCCCCCCACCTCAACTCCGCCGCCGGGGAGGAGCTCGTCCGCGTCGAGCGCGCCGCTGCCGTCGCCCTCGGCTCCCGCGCGCCGGAGCCCCCCGGGACCCTGTTCATCACCACCAGGAGGGTGATTTGGGTCAGTGAGGTGGAGAAGGGCAAGGCCTACGCGGTGGATTTCCTCGCCGTCTCGCTCCACGCCGTCTCTCGCGATCCGGAGGCGTACTCCTCCCCCTGCATCTACACGCAGATTGAGACAGAAGATGGTTCTGATGAGGAGTCCGATGAATCAGACTCCGAAGTAAATGTGGAAACAGAGCTATCGAAAGTCACTGAGATGCGTATCATACCATCTGATCCTTGTCAGTGTATCCTTTTTACACTAAATTGTCTGATGTAGGAGCATTTATTGGTTTTCCTTGTATAAATCTACCTCTGATGCTTGCATACTAAATTTTAATATGAGTGCAGGTTTACATGAAATAACTATCATTTCTAATGCTCTATGTTCATTTTTCATTAGCTCTTTATTTTTAATTTATTCTCATGACTGTAGCAACTAATAGTCATGATTAGATTTGTTTATTCTTGAAGAGTAGGTCTTCACTCTAGAGGGTACTACTTTAAGAATGTAATGTGTGCATTCTGTTCCTTCACAAGTAAAAATTTGCTTGTCTTATGTTATTCAGTTACAAATGGTTCTCTGTTGGGA TTAATAGCTAATCAAGAATAAACTACCTTGCATAATTAGTATCATACTGCAGATCATCATGGCAGATATATTTTTTATTT CAGCAGGTTGAAATGCTATTTATTTGA ] [-] EMBL CB630838 [ GCTTGTCTTATGTTATTCAGTTACAAATGGTTCTCTG TGGGATTTAATAGCTAATCAAGAATAAACTACCTTGCATAATTAGTATCATACTGCAGATCATCATGGCAGATATATTTTTTATTTCCAGCAGTTTGAAATGCTATTTATTTGAAGAATTGACTAATACTATTTCTTGAAGCATTTGTATCTTCTATTATATATTCACATTATATCTTGGATCCTTGACAGAAGTTTCAGTGGATGGACTCTTTGAAGCATTCTCACATTGTGCTGAATTGAACCCCGATCCTAATGCTGAGAGTGATGAAGAGAATGGCTGGGCTCATAGAGATGAAGGTGATGAAGATATGACTGGTGGAAGTGATGCTGAATGTGAGTTTTCAGATGTCAACCCGATAGGTCAAACTGATGAACATGATATTACTCATGCTGTAGTTGAGCTTCAGATCAATGACCAACGTTTTGAGGATGCAGAGGAAGCAGAACATGAGACGCATGGAAATGGACACTAATGCAGATTAACTCCTTTGGGCCACCTTGTAAACTTGCATCAATGGCAACGTATGGGAGAAAAAAGGTCTTGCTACTGGTCAAGAAAAATGTAAGCTGAAAGCATGCTGGAGGTCTTTGTATGCGTTGTCTTCTGTAAAATACATGTATGATCATGCAACTTCATATTCAGAGATATTTTGACAATGTGCTCATGGAAAACATCCATACTTTGTAAGTGTTCAAGCTTAATTGTCAGATTTTTTTTTGTTTACATCCTTGATCGACCAAAGATGTATGCTGATAGCTGAGCAACAAACATTTC] consensusID : consensus_7908#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1057 fasta sequence [CGTCGCCACCGCCGTTCGTTTCCCAAATTCACACAAGCCATGGTGCTAGGCCTCTACGCCTTCGCCGACATCGCCGCCGACGGCGCCCCCCACCTCAACTCCGCCGCCGGGGAGGAGCTCGTCCGCGTCGAGCGCGCCGCTGCCGTCGCCCTCGGCTCCCGCGCGCCGGAGCCCCCCGGGACCCTGTTCATCACCACCAGGAGGGTGATTTGGGTCAGTGAGGTGGAGAAGGGCAAGGCCTACGCGGTGGATTTCCTCGCCGTCTCGCTCCACGCCGTCTCTCGCGATCCGGAGGCGTACTCCTCCCCCTGCATCTACACGCAGATTGAGACAGAAGATGGTTCTGATGAGGAGTCCGATGAATCAGACTCCGAAGTAAATGTGGAAACAGAGCTATCGAAAGTCACTGAGATGCGTATCATACCATCTGATCCTTGTCAGTTGGATGGACTCTTTGAAGCATTCTCACATTGTGCTGAATTGAACCCCGATCCTAATGCTGAGAGTGATGAAGAGAATGGCTGGGCTCATAGAGATGAAGGTGATGAAGATATGACTGGTGGAAGTGATGCTGAATGTGAGTTTTCAGATGTCAACCCGATAGGTCAAACTGATGAACATGATATTACTCATGCTGTAGTTGAGCTTCAGATCAATGACCAACGTTTTGAGGATGCAGAGGAAGCAGAACATGAGACGCATGGAAATGGACACTAATGCAGATTAACTCCTTTGGGCCACCTTGTAAACTTGCATCAATGGCAACGTATGGGAGAAAAAAGGTCTTGCTACTGGTCAAGAAAAATGTAAGCTGAAAGCATGCTGGAGGTCTTTGTATGCGTTGTCTTCTGTAAAATACATGTATGATCATGCAACTTCATATTCAGAGATATTTTGACAATGTGCTCATGGAAAACATCCATACTTTGTAAGTGTTCAAGCTTAATTGTCAGATTTTTTTTTATTTACATCCTTGATCGACCAAAGATGTATGCTGATAGCTGAGCAACAAACATTTCCTTTTCTGTAGCATTTGCTACTGATGAATGGTCCTGTG] [+] EMBL AK121907 [CGTCGCCACCGCCGTTCGTTTCCCAAATTCACACAAGCCATGGTGCTAGGCCTCTACGCCTTCGCCGACATCGCCGCCGACGGCGCCCCCCACCTCAACTCCGCCGCCGGGGAGGAGCTCGTCCGCGTCGAGCGCGCCGCTGCCGTCGCCCTCGGCTCCCGCGCGCCGGAGCCCCCCGGGACCCTGTTCATCACCACCAGGAGGGTGATTTGGGTCAGTGAGGTGGAGAAGGGCAAGGCCTACGCGGTGGATTTCCTCGCCGTCTCGCTCCACGCCGTCTCTCGCGATCCGGAGGCGTACTCCTCCCCCTGCATCTACACGCAGATTGAGACAGAAGATGGTTCTGATGAGGAGTCCGATGAATCAGACTCCGAAGTAAATGTGGAAACAGAGCTATCGAAAGTCACTGAGATGCGTATCATACCATCTGATCCTTGTCAGTTGGATGGACTCTTTGAAGCATTCTCACATTGTGCTGAATTGAACCCCGATCCTAATGCTGAGAGTGATGAAGAGAATGGCTGGGCTCATAGAGATGAAGGTGATGAAGATATGACTGGTGGAAGTGATGCTGAATGTGAGTTTTCAGATGTCAACCCGATAGGTCAAACTGATGAACATGATATTACTCATGCTGTAGTTGAGCTTCAGATCAATGACCAACGTTTTGAGGATGCAGAGGAAGCAGAACATGAGACGCATGGAAATGGACACTAATGCAGATTAACTCCTTTGGGCCACCTTGTAAACTTGCATCAATGGCAACGTATGGGAGAAAAAAGGTCTTGCTACTGGTCAAGAAAAATGTAAGCTGAAAGCATGCTGGAGGTCTTTGTATGCGTTGTCTTCTGTAAAATACATGTATGATCATGCAACTTCATATTCAGAGATATTTTGACAATGTGCTCATGGAAAACATCCATACTTTGTAAGTGTTCAAGCTTAATTGTCAGATTTTTTTTTATTTACATCCTTGATCGACCAAAGATGTATGCTGATAGCTGAGCAACAAACATTTCCTTTTCTGTAGCATTTGCTACTGATGAATGGTCCTGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7908#0 AAACTGAAAACCCAAAAGCCCAAAACCCTAGCTCTGGTGCCCGGCTCGGCTACCCCGTCG 60 consensus_7908#1 -------------------------------------------------------CGTCG 5 ***** consensus_7908#0 CCACCGCCGTTCGTTTCCCAAATTCACACAAGCCATGGTGCTAGGCCTCTACGCCTTCGC 120 consensus_7908#1 CCACCGCCGTTCGTTTCCCAAATTCACACAAGCCATGGTGCTAGGCCTCTACGCCTTCGC 65 ************************************************************ consensus_7908#0 CGACATCGCCGCCGACGGCGCCCCCCACCTCAACTCCGCCGCCGGGGAGGAGCTCGTCCG 180 consensus_7908#1 CGACATCGCCGCCGACGGCGCCCCCCACCTCAACTCCGCCGCCGGGGAGGAGCTCGTCCG 125 ************************************************************ consensus_7908#0 CGTCGAGCGCGCCGCTGCCGTCGCCCTCGGCTCCCGCGCGCCGGAGCCCCCCGGGACCCT 240 consensus_7908#1 CGTCGAGCGCGCCGCTGCCGTCGCCCTCGGCTCCCGCGCGCCGGAGCCCCCCGGGACCCT 185 ************************************************************ consensus_7908#0 GTTCATCACCACCAGGAGGGTGATTTGGGTCAGTGAGGTGGAGAAGGGCAAGGCCTACGC 300 consensus_7908#1 GTTCATCACCACCAGGAGGGTGATTTGGGTCAGTGAGGTGGAGAAGGGCAAGGCCTACGC 245 ************************************************************ consensus_7908#0 GGTGGATTTCCTCGCCGTCTCGCTCCACGCCGTCTCTCGCGATCCGGAGGCGTACTCCTC 360 consensus_7908#1 GGTGGATTTCCTCGCCGTCTCGCTCCACGCCGTCTCTCGCGATCCGGAGGCGTACTCCTC 305 ************************************************************ consensus_7908#0 CCCCTGCATCTACACGCAGATTGAGACAGAAGATGGTTCTGATGAGGAGTCCGATGAATC 420 consensus_7908#1 CCCCTGCATCTACACGCAGATTGAGACAGAAGATGGTTCTGATGAGGAGTCCGATGAATC 365 ************************************************************ consensus_7908#0 AGACTCCGAAGTAAATGTGGAAACAGAGCTATCGAAAGTCACTGAGATGCGTATCATACC 480 consensus_7908#1 AGACTCCGAAGTAAATGTGGAAACAGAGCTATCGAAAGTCACTGAGATGCGTATCATACC 425 ************************************************************ consensus_7908#0 ATCTGATCCTTGTCAGTGTATCCTTTTTACAGTANATTGTCTGATGTAGGAGCATTTATT 540 consensus_7908#1 ATCTGATCCTTGTCAGT------------------------------------------- 442 ***************** consensus_7908#0 GGGTTTCCTTGTATAAATCTACCTCTGATGCTTGCATACTAANATTTGATATGAGTGCAG 600 consensus_7908#1 ------------------------------------------------------------ consensus_7908#0 GTTTACATGAAATAACTATCATTTCTAATGCTCTATGTTCATTTTTCATTAGCTCTTTAT 660 consensus_7908#1 ------------------------------------------------------------ consensus_7908#0 TTTTAATTTATTCTCATGACTGTAGCAACTAATAGTCATGATTAGATTTGTTTATTCTTG 720 consensus_7908#1 ------------------------------------------------------------ consensus_7908#0 AAGAGTAGGTCTTCACTCTAGAGGGTACTACTTTAAGAATGTAATGTGTGCATTCTGTTC 780 consensus_7908#1 ------------------------------------------------------------ consensus_7908#0 CTTCACAAGTAAAAATTTGCTTGTCTTATGTTATTCAGTTACAAATGGTTCTCTGTTGGG 840 consensus_7908#1 ------------------------------------------------------------ consensus_7908#0 ATTAATAGCTAATCAAGAATAAACTACCTTGCATAATTAGTATCATACTGCAGATCATCA 900 consensus_7908#1 ------------------------------------------------------------ consensus_7908#0 TGGCAGATATATTTTTTATTTCAGCAGGTTGAAATGCTATTTATTTGAAGAATTGACTAA 960 consensus_7908#1 ------------------------------------------------------------ consensus_7908#0 TACTATTTCTTGAAGCATTTGTATCTTCTATTATATATTCACATTATATCTTGGATCCTT 1020 consensus_7908#1 ------------------------------------------------------------ consensus_7908#0 GACAGAAGTTTCAGTGGATGGACTCTTTGAAGCATTCTCACATTGTGCTGAATTGAACCC 1080 consensus_7908#1 --------------TGGATGGACTCTTTGAAGCATTCTCACATTGTGCTGAATTGAACCC 488 ********************************************** consensus_7908#0 CGATCCTAATGCTGAGAGTGATGAAGAGAATGGCTGGGCTCATAGAGATGAAGGTGATGA 1140 consensus_7908#1 CGATCCTAATGCTGAGAGTGATGAAGAGAATGGCTGGGCTCATAGAGATGAAGGTGATGA 548 ************************************************************ consensus_7908#0 AGATATGACTGGTGGAAGTGATGCTGAATGTGAGTTTTCAGATGTCAACCCGATAGGTCA 1200 consensus_7908#1 AGATATGACTGGTGGAAGTGATGCTGAATGTGAGTTTTCAGATGTCAACCCGATAGGTCA 608 ************************************************************ consensus_7908#0 AACTGATGAACATGATATTACTCATGCTGTAGTTGAGCTTCAGATCAATGACCAACGTTT 1260 consensus_7908#1 AACTGATGAACATGATATTACTCATGCTGTAGTTGAGCTTCAGATCAATGACCAACGTTT 668 ************************************************************ consensus_7908#0 TGAGGATGCAGAGGAAGCAGAACATGAGACGCATGGAAATGGACACTAATGCAGATTAAC 1320 consensus_7908#1 TGAGGATGCAGAGGAAGCAGAACATGAGACGCATGGAAATGGACACTAATGCAGATTAAC 728 ************************************************************ consensus_7908#0 TCCTTTGGGCCACCTTGTAAACTTGCATCAATGGCAACGTATGGGAGAAAAAAGGTCTTG 1380 consensus_7908#1 TCCTTTGGGCCACCTTGTAAACTTGCATCAATGGCAACGTATGGGAGAAAAAAGGTCTTG 788 ************************************************************ consensus_7908#0 CTACTGGTCAAGAAAAATGTAAGCTGAAAGCATGCTGGAGGTCTTTGTATGCGTTGTCTT 1440 consensus_7908#1 CTACTGGTCAAGAAAAATGTAAGCTGAAAGCATGCTGGAGGTCTTTGTATGCGTTGTCTT 848 ************************************************************ consensus_7908#0 CTGTAAAATACATGTATGATCATGCAACTTCATATTCAGAGATATTTTGACAATGTGCTC 1500 consensus_7908#1 CTGTAAAATACATGTATGATCATGCAACTTCATATTCAGAGATATTTTGACAATGTGCTC 908 ************************************************************ consensus_7908#0 ATGGAAAACATCCATACTTTGTAAGTGTTCAAGCTTAATTGTCAGATTTTTTTTTGTTTA 1560 consensus_7908#1 ATGGAAAACATCCATACTTTGTAAGTGTTCAAGCTTAATTGTCAGATTTTTTTTTATTTA 968 ******************************************************* **** consensus_7908#0 CATCCTTGATCGACCAAAGATGTATGCTGATAGCTGAGCAACAAACATTTC--------- 1611 consensus_7908#1 CATCCTTGATCGACCAAAGATGTATGCTGATAGCTGAGCAACAAACATTTCCTTTTCTGT 1028 *************************************************** consensus_7908#0 ----------------------------- consensus_7908#1 AGCATTTGCTACTGATGAATGGTCCTGTG 1057 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||