These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_791#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 405 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAACAATTACGGGCCGCTTAACCCGGGCCCCCCAAAAAAAAAAAAAAAAAAAAAAACCTGCCCCAAGGAACCAAAGCCCTTAATTGCCCCCTGACTCCTCCCAACCCGGGGGGTTATACCCCAAAAAACTGATTAACTGCCCCCGCCTAACGTTGGCAAAACCAATGATGCCAACCAAGGCCTTAGGGGTTGCCTTTTTTGCCCCCCCAAACCCCTTGAACCCTTGGGGGGGATCGGGGCCTCCAAACATGGGCAGTTTCCACATGGGCCAATACCTACCGGCATAATATCCGGGGGATCTGGGATTTTCACGGGAAACAAATCCCACCTTGGTGAACTCCAAACAAGGGC] [+] EMBL CF299776 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAACAATTACGGGCCGCTTAACCCGGGCCCCCCAAAAAAAAAAAAAAAAAAAAAAACCTGCCCCAAGGAACCAAAGCCCTTAATTGCCCCCTGACTCCTCCCAACCCGGGGGGTTATACCCCAAAAAACTGATTAACTGCCCCCGCCTAACGTTGGCAAAACCAATGATGCCAACCAAGGCCTTAGGGGTTGCCTTTTTTGCCCCCCCAAACCCCTTGAACCCTTGGGGGGGATCGGGGCCTCCAAACATGGGCAGTTTCCACATGGGCCAATACCTACCGGCATAATATCCGGGGGATCTGGGATTTTCACGGGAAACAAATCCCACCTTGGTGAACTCCAAACAAGGGC] consensusID : consensus_791#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 337 fasta sequence [AGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAAGAAAACTCTTGCAACAACCGGAGGGCGGAACCCCAAAAAACAATTACCTGCCGCTTTACCCGGGCCCCCCAAAAAAAAAGAAAAAGAAAGAACCTGCCCCAAGGGACCAAAGCGCTTAATTGGCGCCTGAATTCTTGCAACCCGGGGGGTTATACCCCAAGAAACTGATTAACTGGCCCCGCCTAACGTTGGCAAAACCCATGATGCCAACCAAAGGCTTAGGGGTTGCCTTTTTTGGCTCCTCGAGCTCCTTGAACACTTGGGGGGGATTGGGGCCT] [+] EMBL CF299885 [AGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAAGAAAACTCTTGCAACAACCGGAGGGCGGAACCCCAAAAAACAATTACCTGCCGCTTTACCCGGGCCCCCCAAAAAAAAAGAAAAAGAAAGAACCTGCCCCAAGGGACCAAAGCGCTTAATTGGCGCCTGAATTCTTGCAACCCGGGGGGTTATACCCCAAGAAACTGATTAACTGGCCCCGCCTAACGTTGGCAAAACCCATGATGCCAACCAAAGGCTTAGGGGTTGCCTTTTTTGGCTCCTCGAGCTCCTTGAACACTTGGGGGGGATTGGGGCCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_791#0 -----TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT----- 50 consensus_791#1 AGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAAG 60 ************************************************** consensus_791#0 -----TTTTG---------------------------AACAATTACGGGCCGCTTAACCC 78 consensus_791#1 AAAACTCTTGCAACAACCGGAGGGCGGAACCCCAAAAAACAATTACCTGCCGCTTTACCC 120 * *** ********* ******* **** consensus_791#0 GGGCCCCCCAAAAAAAAAAAAAAAAAAAAAAACCTGCCCCAAGGAACCAAAGCCCTTAAT 138 consensus_791#1 GGGCCCCCCAAAAAAAAAGAAAAAGAAAGAA-CCTGCCCCAAGGGACCAAAGCGCTTAAT 179 ****************** ***** *** ** ************ ******** ****** consensus_791#0 TGCCCCCTGACTCCTCCCAACCCGGGGGGTTATACCCCAAAAAACTGATTAACTGCCCCC 198 consensus_791#1 TGGCGCCTGAATTCTTGCAACCCGGGGGGTTATACCCCAAGAAACTGATTAACTGGCCCC 239 ** * ***** * ** *********************** ************** **** consensus_791#0 GCCTAACGTTGGCAAAACCAATGATGCCAACCAAGGCCTTAGGGGTTGCCTTTTTTGCCC 258 consensus_791#1 GCCTAACGTTGGCAAAACCCATGATGCCAACCAAAGGCTTAGGGGTTGCCTTTTTTGGCT 299 ******************* ************** * ******************** * consensus_791#0 CCCCAAACCCCTTGAACCCTTGGGGGGGATCGGGGCCTCCAAACATGGGCAGTTTCCACA 318 consensus_791#1 CCTCGAGCTCCTTGAACACTTGGGGGGGATTGGGGCCT---------------------- 337 ** * * * ******** ************ ******* consensus_791#0 TGGGCCAATACCTACCGGCATAATATCCGGGGGATCTGGGATTTTCACGGGAAACAAATC 378 consensus_791#1 ------------------------------------------------------------ consensus_791#0 CCACCTTGGTGAACTCCAAACAAGGGC 405 consensus_791#1 --------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||