These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7920#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 844 fasta sequence [CTCGTGAGCTCGCCCCTGCGCCGCCTGCGCCGATCTCCATCCCGCGAGCGAGCAGGGGCGCCCGGCGCTGGCGCCGTCGTTCGTCCTGTTGCTTCCGCCCGCATCCTGGTGAGCATCCATCCGTTACCCTACGCGCACCCTCTTCCTCATCTCTCTCTGGTCTCTTCCCACGCACTTCTTCTCGAATTTGCGTTGAACCCTATAGATTCTGTTCTAGAAATTTGCCTTAATCTGAATAACTAGTAACAGTTTGTTTGTTCCCCCAAGTAGTTTGGGGCTTCAATTGAACCCCCTTGTCGGTCCCACGCTAGATCCGCTCCTGCTAGTGTCTGAATTGTTCATCTTGTTTTTAGTACAGAATTACCAGTTCTTACCCCATTTTTTGTGCTAATTTTCGCATCGGAACAGAAACCCTTTCGTTTGTCAAACTCTCTATTGTTGTTTTAATAGATGCCCCTAACTATCAAGGATAATAGTATCTGTGGAATAATGGGATTAATTATTTCTGGCACACCATTTACTCTCTCTCTGTCTCTCTCTAAATTTCACCTGGCATAGCAGCATGCCAGCATAATGCATTTTTTCACCTTTCTCTTGAATACTGTTTTCTCTTTACGGATTAAGGAAAACATTATTGTACAGACAGTGCTCGTTTCAGAATAAATGGGAGATAGGGAAAGACGAACTGTGTTTGTCACAGTAGGGACCACGTGTTTTGATGCTCTTGTCAAGGCAGTAGATTCCCCGCAAGTCAAAGAAGCTCTACTGGAAAAGGTTATACTGATCTAATAATCAAATGGGCCGAGGTACATATGTTCCCATCTAGGTCAATGAATTTTCTCTT] [+] EMBL CB663437 [CTCGTGAGCTCGCCCCTGCGCCGCCTGCGCCGATCTCCATCCCGCGAGCGAGCAGGGGCGCCCGGCGCTGGCGCCGTCGTTCGTCCTGTTGCTTCCGCCCGCATCCTGGTGAGCATCCATCCGTTACCCTACGCGCACCCTCTTCCTCATCTCTCTCTGGTCTCTTCCCACGCACTTCTTCTCGAATTTGCGTTGAACCCTATAGATTCTGTTCTAGAAATTTGCCTTAATCTGAATAACTAGTAACAGTTTGTTTGTTCCCCCAAGTAGTTTGGGGCTTCAATTGAACCCCCTTGTCGGTCCCACGCTAGATCCGCTCCTGCTAGTGTCTGAATTGTTCATCTTGTTTTTAGTACAGAATTACCAGTTCTTACCCCATTTTTTGTGCTAATTTTCGCATCGGAACAGAAACCCTTTCGTTTGTCAAACTCTCTATTGTTGTTTTAATAGATGCCCCTAACTATCAAGGATAATAGTATCTGTGGAATAATGGGATTAATTATTTCTGGCACACCATTTACTCTCTCTCTGTCTCTCTCTAAATTTCACCTGGCATAGCAGCATGCCAGCATAATGCATTTTTTCACCTTTCTCTTGAATACTGTTTTCTCTTTACGGATTAAGGAAAACATTATTGTACAGACAGTGCTCGTTTCAGAATAAATGGGAGATAGGGAAAGACGAACTGTGTTTGTCACAGTAGGGACCACGTGTTTTGATGCTCTTGTCAAGGCAGTAGATTCCCCGCAAGTCAAAGAAGCTCTACTGGAAAAGGTTATACTGATCTAATAATCAAATGGGCCGAGGTACATATGTTCCCATCTAGGTCAATGAATTTTCTCTT] consensusID : consensus_7920#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 797 fasta sequence [CTCCGCTTTTCAAACAATTCAAAGAGTTCTCTCGGATTACAATTGGTGAGTTGGAATCATACCAAAATGGTTGGGTATAGGCTTGCATGTGACATGCCACTATGAAACTTCACTTTTGTCAGCTACCTCTTCCATATGTGACTTCATTTTCTTACAACAGAAAAGGCGGGAATAAGAAAAAAAAAATCAGTCATCTGGGAAGCCAAAAAACTTGTTAATCAGCGATACAACTGGTTTGGCATCCCCTGGCACATAAGGGTTGAGAGTCTCTATGTCCATTTCCTGGATCGTCTCTCCTAGTGTTTGTGGGCTTGCACAGAAGAGGTGTTTCCTTGTAGCCAGTTCCTCTGCTAACTCACTCTGATGATTGTCCATCAAATCCTCATTTACAACAACAATTAGAGGTTTGCCATGTCGCAACGTCTCGAATATGCTTCCTGAACCTGCTAGAGCTCAATCTGGTTAATTGCAATCAGCATTGACAACTACTCCCTCAGTTTCATAATGTAAGAAGTAACAAAGATGCAAAATTGATGATATACTTGCTAAAATTCACAGTATTTATCCAGAGCACATATCAAGGCAGCACAGAATTTATGTAACATTTAATGAAATTTGACCATAACGGCAGGTAGAAATATTACAACTCTACCTAACAATAGCAAGTATGGTCAGCTTACTTAAATATTATGCTTCTTTGTACGCGTCAGATAAATATTGTGAAGCGAAGTAAAAATGGCATGTTTATTAGTTCAAATGAACTCAAATAGCAGTATGATCTAGAGGTGAAAAAACAT] [+] EMBL CB663438 [CTCCGCTTTTCAAACAATTCAAAGAGTTCTCTCGGATTACAATTGGTGAGTTGGAATCATACCAAAATGGTTGGGTATAGGCTTGCATGTGACATGCCACTATGAAACTTCACTTTTGTCAGCTACCTCTTCCATATGTGACTTCATTTTCTTACAACAGAAAAGGCGGGAATAAGAAAAAAAAAATCAGTCATCTGGGAAGCCAAAAAACTTGTTAATCAGCGATACAACTGGTTTGGCATCCCCTGGCACATAAGGGTTGAGAGTCTCTATGTCCATTTCCTGGATCGTCTCTCCTAGTGTTTGTGGGCTTGCACAGAAGAGGTGTTTCCTTGTAGCCAGTTCCTCTGCTAACTCACTCTGATGATTGTCCATCAAATCCTCATTTACAACAACAATTAGAGGTTTGCCATGTCGCAACGTCTCGAATATGCTTCCTGAACCTGCTAGAGCTCAATCTGGTTAATTGCAATCAGCATTGACAACTACTCCCTCAGTTTCATAATGTAAGAAGTAACAAAGATGCAAAATTGATGATATACTTGCTAAAATTCACAGTATTTATCCAGAGCACATATCAAGGCAGCACAGAATTTATGTAACATTTAATGAAATTTGACCATAACGGCAGGTAGAAATATTACAACTCTACCTAACAATAGCAAGTATGGTCAGCTTACTTAAATATTATGCTTCTTTGTACGCGTCAGATAAATATTGTGAAGCGAAGTAAAAATGGCATGTTTATTAGTTCAAATGAACTCAAATAGCAGTATGATCTAGAGGTGAAAAAACAT] consensusID : consensus_7920#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 717 fasta sequence [CTTCCGTCGTCTCCTCCTCGTGAGCTCGCCCCTGCGCCGCCTGCGCCGATCTCCATCCCGCGAGCGAGCAGGGGCGCCCGGCGCTGGCGCCGTCGTTCGTCCTGTTGCTTCCGCCCGCATCCTGAATAAATGGGAGATAGGGAAAGACGAACTGTGTTTGTCACAGTAGGGACCACGTGTTTTGATGCTCTTGTCAAGGCAGTAGATTCCCCGCAAGTCAAAGAAGCTCTACTGGAAAAAGGTTATACTGATCTAATAATTCAAATGGGCCGAGGTCTCAGGAGATGGAACTCTTCAAGTTGATTATTTCACTTTTTCGCCAAGCATTGCTGATTATATAAGGGATGCTTCCCTGGTCATCAGTCATGCAGGTTCAGGAAGCATATTCGAGACGTTGCGACATGGCAAACCTCTAATTGTTGTTGTAAATGAGGATTTGATGGACAATCATCAGAGTGAGTTAGCAGAGGAACTGGCTACAAGGAAACACCTCTTCTGTGCAAGCCCACAAACACTAGGAGAGACGATCCAGGAAATGGACATAGAGACTCTCAACCCTTATGTGCCAGGGGATGCCAAACCAGTTGTATCGCTGATTAACAAGTTTTTTGGCTTCCCAGATGACTGATTTTTTTTTTCTTATTCCCGCCTTTTCTGTTGTAAGAAAATGAA-GTCACATATGGAAGAGGTAGCTGACAAAAGTGAAGTTTCATAGCG] [+] EMBL AK121672 [CTTCCGTCGTCTCCTCCTCGTGAGCTCGCCCCTGCGCCGCCTGCGCCGATCTCCATCCCGCGAGCGAGCAGGGGCGCCCGGCGCTGGCGCCGTCGTTCGTCCTGTTGCTTCCGCCCGCATCCTGAATAAATGGGAGATAGGGAAAGACGAACTGTGTTTGTCACAGTAGGGACCACGTGTTTTGATGCTCTTGTCAAGGCAGTAGATTCCCCGCAAGTCAAAGAAGCTCTACTGGAAAAAGGTTATACTGATCTAATAATTCAAATGGGCCGAGGTCTCAGGAGATGGAACTCTTCAAGTTGATTATTTCACTTTTTCGCCAAGCATTGCTGATTATATAAGGGATGCTTCCCTGGTCATCAGTCATGCAGGTTCAGGAAGCATATTCGAGACGTTGCGACATGGCAAACCTCTAATTGTTGTTGTAAATGAGGATTTGATGGACAATCATCAGAGTGAGTTAGCAGAGGAACTGGCTACAAGGAAACACCTCTTCTGTGCAAGCCCACAAACACTAGGAGAGACGATCCAGGAAATGGACATAGAGACTCTCAACCCTTATGTGCCAGGGGATGCCAAACCAGTTGTATCGCTGATTAACAAGTTTTTTGGCTTCCCAGATGACTGATTTTTTTTTTCTTATTCCCGCCTTTTCTGTTGTAAGAAAATGAA GTCACATATGGAAGAGGTAGCTGACAAAAGTGAAGTTTCATA ] [+] EMBL CA757867 [ AGGAAACACCTCTTCTGTGCAAGCCCACAAACACTAGGAGAGACGATCCAGGAAATGGACATAGAGACTCTCAACCCTTATGTGCCAGGGGATGCCAAACCAGTTGTATCNCTGATTAACAAGTTNTNTGGCTTNCCAGATGACTGATTNTTTTTTNCTTATTCCCGCCTTTTCTGTTGNNAGAAAATGAANGT ACATATGGAAGAGGTAGCTGACAANAGNGAAGTNNNATAGCG] consensusID : consensus_7920#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 693 fasta sequence [GTTTCATATGCATTTCCCTCCGTTTTCAAACAATTCAAAGAGTTCTCTCGGATTACACTTGGGGAGTTGGAATCATACCAAAATGGTTGGGTATAGGCTTGCATGTGACATGCCACTATGAAACTTCACTTTTGTCAGCTACCTCTTCCATATGGGACTTCATTTTCTTACAACAAAAAAGGCGGGAATAAAAAAAAAAAAAATCTGTCCTCTGGGAAGCCAAAAAACTTGTTAATCAGCGATACAACTGGTTTGGCATCCCCTGGCACATAAGGGTTGAAAGTCTCTATGTCCATTTCCTGGATCGTCTCTCCTAGTGTTTGGGGGCTTGCACAAAAGAGGGGTTTCCTTGAAGCCAGTTCCTCTGCTAACTCACTCTGATGATTGCCCATCAAATCCTCATTTACAACAACAATTAAAGGTTTGCCATGTCCCAACGTCTCGAATATGCTTCCTGAACCTGCATGACTGATGACCAGGGAAGCATCCCTTATATAATCAGCAATGCTTGGCGAAAAAGTGAAATAATCAACTTGAAGAGTTCCATCTCCTGAGACCTGTATTCAAATATATCAAAGTTTCTGGCTGGTTTCACTTCACTTTCACAACCATCAACATGGTGCTTACAAATGTTTCAGGTAGAACAGAGGAATCTCTAGCAGAGTAAAGCAATTATTATCTGCTAATATAACA] [+] EMBL CB670537 [GTTTCATATGCATTTCCCTCCGTTTTCAAACAATTCAAAGAGTTCTCTCGGATTACACTTGGGGAGTTGGAATCATACCAAAATGGTTGGGTATAGGCTTGCATGTGACATGCCACTATGAAACTTCACTTTTGTCAGCTACCTCTTCCATATGGGACTTCATTTTCTTACAACAAAAAAGGCGGGAATAAAAAAAAAAAAAATCTGTCCTCTGGGAAGCCAAAAAACTTGTTAATCAGCGATACAACTGGTTTGGCATCCCCTGGCACATAAGGGTTGAAAGTCTCTATGTCCATTTCCTGGATCGTCTCTCCTAGTGTTTGGGGGCTTGCACAAAAGAGGGGTTTCCTTGAAGCCAGTTCCTCTGCTAACTCACTCTGATGATTGCCCATCAAATCCTCATTTACAACAACAATTAAAGGTTTGCCATGTCCCAACGTCTCGAATATGCTTCCTGAACCTGCATGACTGATGACCAGGGAAGCATCCCTTATATAATCAGCAATGCTTGGCGAAAAAGTGAAATAATCAACTTGAAGAGTTCCATCTCCTGAGACCTGTATTCAAATATATCAAAGTTTCTGGCTGGTTTCACTTCACTTTCACAACCATCAACATGGTGCTTACAAATGTTTCAGGTAGAACAGAGGAATCTCTAGCAGAGTAAAGCAATTATTATCTGCTAATATAACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7920#1 -----------------CTCCGCTTTTCAAACAATTCAAAGAGTTCTCTCGGATTACAAT 43 consensus_7920#3 GTTTCATATGCATTTCCCTCCG-TTTTCAAACAATTCAAAGAGTTCTCTCGGATTACACT 59 consensus_7920#2 -------CTTCCGTCGTCTCCTCCTCGTGAGCTCGCCCCTGCGCCGCCTGCGC---CGAT 50 consensus_7920#0 -----------------------CTCGTGAGCTCGCCCCTGCGCCGCCTGCGC---CGAT 34 * * * * * * ** * * * consensus_7920#1 TGGTGAGTTGGAATCATACCAAAATGGTTGGGTATAG-GCTTGCATGTGACATGCCACTA 102 consensus_7920#3 TGGGGAGTTGGAATCATACCAAAATGGTTGGGTATAG-GCTTGCATGTGACATGCCACTA 118 consensus_7920#2 CTCCATCCCGCGAGCGAGCAGGGGCGCCCGGCGCTGGCGCCGTCGTTCGTCCTGTTGCT- 109 consensus_7920#0 CTCCATCCCGCGAGCGAGCAGGGGCGCCCGGCGCTGGCGCCGTCGTTCGTCCTGTTGCT- 93 * * * * * ** * * ** * * * * ** ** consensus_7920#1 TGAAACTTCACTTTT---GTCAGCTACCTCTTCC--ATATGTGACTTCATTTTCTTA--- 154 consensus_7920#3 TGAAACTTCACTTTT---GTCAGCTACCTCTTCC--ATATGGGACTTCATTTTCTTA--- 170 consensus_7920#2 TCCGCCCGCATCCTG---AATAAATGGGAGATAGGGAAAGACGAACTGTGTTTGTCA--- 163 consensus_7920#0 TCCGCCCGCATCCTGGTGAGCATCCATCCGTTACC-CTACGCGCACCCTCTTCCTCATCT 152 * * ** * * * * * ** * * consensus_7920#1 CAACAGAAAA------GGCGGGAATA-----AGAAAA------AAAAAA-TCAGTCATCT 196 consensus_7920#3 CAACAAAAAA------GGCGGGAATA-----AAAAAA------AAAAAAATCTGTCCTCT 213 consensus_7920#2 CAGTAGGGAC------CACGTGTTTT-----GATGCTCTTGTCAAGGCAGTAGATTCCCC 212 consensus_7920#0 CTCTCTGGTCTCTTCCCACGCACTTCTTCTCGAATTTGCGTTGAACCCTATAGATTCTGT 212 * ** * ** * * consensus_7920#1 GGGAAGCCAAAAAACT-TGTTAATCAGC-GATACAA-CTGGTTTGGCATCCC-------- 245 consensus_7920#3 GGGAAGCCAAAAAACT-TGTTAATCAGC-GATACAA-CTGGTTTGGCATCCC-------- 262 consensus_7920#2 GCAAGTCAAAGAAGCTCTACTGGAAAAA-GGTTATA-CTGATCTAATAATTCAAATGGGC 270 consensus_7920#0 TCTAGAAATTTGCCTTAATCTGAATAACTAGTAACAGTTTGTTTGTTCCCCCAAGTAGTT 272 * * * * * * * * * * consensus_7920#1 CTGGCACATAAGGGTTGAGAGTCTCTATGTCCATTTCCTGGATCGTCTCTCCTA-----G 300 consensus_7920#3 CTGGCACATAAGGGTTGAAAGTCTCTATGTCCATTTCCTGGATCGTCTCTCCTA-----G 317 consensus_7920#2 CGAGGTCTCAGGAGATGGAACTCTTCAAGTTGATTATTTC-ACTTTTTCGCCAA-----G 324 consensus_7920#0 TGGGGCTTCAATTGAACCCCCTTGTCGGTCCCACGCTAGATCCGCTCCTGCTAGTGTCTG 332 * * * * * * * * consensus_7920#1 TGTTTGTGGGCTTGCACAGAAGAGGTGTTTCCTTGT--------AGCCAGTTCCTCTGCT 352 consensus_7920#3 TGTTTGGGGGCTTGCACAAAAGAGGGGTTTCCTTGA--------AGCCAGTTCCTCTGCT 369 consensus_7920#2 CATTGCTGA--TTATATAAGGGATGC-TTCCCTGGT--------CATCAGTCATGCAGGT 373 consensus_7920#0 AATTGTTCATCTTGTTTTTAGTACAGAATTACCAGTTCTTACCCCATTTTTTGTGCTAAT 392 ** ** * * * * * * * consensus_7920#1 ------AACTCACTCTGATGATTGTC-CAT--CAAATCCTCATTTACAACAACAATTAGA 403 consensus_7920#3 ------AACTCACTCTGATGATTGCC-CAT--CAAATCCTCATTTACAACAACAATTAAA 420 consensus_7920#2 TCAGGAAGCATATTCGAGACGTTGCGACATGGCAAACCTCTAATTGTTGTTGTAAATGAG 433 consensus_7920#0 TTTCGCATCGGAACAGAAACCCTTTCGTTTGTCAAACTCTCTATTGTTGTTTTAATAGAT 452 * * * * * **** ** ** consensus_7920#1 G-----GTTTGCCATGTCGCAACGTCTCGAATATGCTTCCTGAACCTGCTAGAGCTCAA- 457 consensus_7920#3 G-----GTTTGCCATGTCCCAACGTCTCGAATATGCTTCCTGAACCTGCATGACTGATG- 474 consensus_7920#2 G-----ATTTG--ATGGACAATCATCA-GAGTGAGTTAGCAGAG---GAACTGGCTACA- 481 consensus_7920#0 GCCCCTAACTATCAAGGATAATAGTATCTGTGGAATAATGGGATTAATTATTTCTGGCAC 512 * * * * * * ** consensus_7920#1 TCTGGTTAATTGCAATCAGCATTGACAACTACTCC-CTCAGTTTCATAATGTAAGAA-GT 515 consensus_7920#3 ACCAGGGAAGCATCCCTTATATAATCAGCAATGC---TTGGCGAAAAAGTG----AA-AT 526 consensus_7920#2 AGGAAACACCTCTTCTGTGCAAGCCCACAAACAC---TAGGAGAGACGATCC---AG-GA 534 consensus_7920#0 ACCATTTACTCTCTCTCTGTCTCTCTCTAAATTTCACCTGGCATAGCAGCATGCCAGCAT 572 * * * * consensus_7920#1 AACAAA---------------GATGCAAAAT-TGATG-ATATACTTGCTAAAATTCAC-- 556 consensus_7920#3 AATCAA---------------CTTGAAGAGT-TC-------CATCTCCTGAGACCTGT-- 561 consensus_7920#2 AATGGA---------------CATAGAGACTCTCAAC-CCTTATGTGCCAGGGGATGCCA 578 consensus_7920#0 AATGCATTTTTTCACCTTTCTCTTGAATACTGTTTTCTCTTTACGGATTAAGGAAAACAT 632 ** * * * * * * * consensus_7920#1 AGT-ATTTAT-CCA-----GAGCACATATCAAGGCAGCACAGAATTTATGTAACATTTAA 609 consensus_7920#3 ATTCAAATATATCA-----AAGTTTCTGGCT-GGTTTCACTTCACTTTCACAACCATCAA 615 consensus_7920#2 AACCAGTTGTATCGC---TGATTAACAAGTTTTTTGGCTTCCCAGATGACTGATTTTTTT 635 consensus_7920#0 TATTGTACAGACAGTGCTCGTTTCAGAATAAATGGGAGATAGGGAAAGACGAACTGTGTT 692 * * consensus_7920#1 TGAAAT-TTG----ACCATAACGGCAGGTA-------GAAATATTACAACTCTACCTAAC 657 consensus_7920#3 CATGGTGCTT----ACAAATGTTTCAGGTA-------GAACAGAGGAATCTCTAGCAGAG 664 consensus_7920#2 TTTCTTATTC----CCGCCTTTTCTGTTGT-------AAGAAAATGAAGTCACATATGGA 684 consensus_7920#0 TGTCACAGTAGGGACCACGTGTTTTGATGCTCTTGTCAAGGCAGTAGATTCCCCGCAAGT 752 * * * * consensus_7920#1 AATAGCAAGTATGGTCAGCTTACTTAAATATTATGCTTCTTTGTACGCGTCAGATAAATA 717 consensus_7920#3 TAAAGCAATTATTATCTGCTAATATAACA------------------------------- 693 consensus_7920#2 AGAGGTAGCTGACAAAAGTGAAGTTTCATAGCG--------------------------- 717 consensus_7920#0 CAAAGAAGCTCTACTGGAAAAGGTTATACTGATCTAATAATCAAATGGGCCGAGGTACAT 812 * * * * consensus_7920#1 TTGTGAAGCGAAGTAAAAATGGCATGTTTATTAGTTCAAATGAACTCAAATAGCAGTATG 777 consensus_7920#3 ------------------------------------------------------------ consensus_7920#2 ------------------------------------------------------------ consensus_7920#0 ATGTTCCCATCTAGGTCAATGAATTTTCTCTT---------------------------- 844 consensus_7920#1 ATCTAGAGGTGAAAAAACAT 797 consensus_7920#3 -------------------- consensus_7920#2 -------------------- consensus_7920#0 -------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||