These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7923#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 724 fasta sequence [TGAGGAGAGGAGAGGCGAGACGAGGGGGGAATCGAGGCGCGAGGGAGAGGGAGAGGGAGAGGGAGATGTCGATCCTGTGGGAGAAGAGCGCGGGGTGGCGGTGGCTGGTGCGGCGGACGCGCGACTCCAAGCCCTTCTTCTTCACCTTCGCGGCGCTGTGCGGCGTTGTCCCGGGCGTCGTCGGCTACGGCGTGATGCAGCTCACCAGCTCCCGCAACGACCAGCTCGAGGCCCACCTCCGCTCCACCGCCCGCCCCGAGACCGCGATGATGGGGCAAGTGAACCGGGAGAGACTGGCAGAGTTTCTTGGAGAGCTGCAAAGGAAAGAGGACACAAA-TGACAGATATGTTGCTTGCCCTCAAAGGGGAGACACTGACGAGGAAGCGGTATGAACGGATTCAGCCTGTCCAACAGGAAGGTACACCGGAGAGTCCGCCTGTCCAGGAGCCAGCTACAACGGAGAGTGTCAAGGCTAAATGATTCATGGTTATTGCTCCGAGAAAGATATGATCCCCTCAAAACCCCTGACCTACATGTGCTGTACCCTTGGAAGGTTAAAATCCACGTTCGTAAGCATCCTTATGCCTCTCGTTTTGGTTTACCTACCAGATTGGTTTCCCCGTTCCCTGATAGTTTAGTTTGCCGTCGATGTCCGGTAATTTTGGGTCTGTGTGCCCATGATCCNNTGTTCCCCTGTGGACCCTTTAAGGTTTTTTTGACCTCC] [+] EMBL OSC8541 [TGAGGAGAGGAGAGGCGAGACGAGGGGGGAATCGAGGCGCGAGGGAGAGGGAGAGGGAGAGGGAGATGTCGATCCTGTGGGAGAAGAGCGCGGGGTGGCGGTGGCTGGTGCGGCGGACGCGCGACTCCAAGCCNTTCTTCTTNACCTTCGCGGCGCTGTGCGGCGTTGTCCCGGGCGTCGTCGGCTACGGCGTGATG ] [+] EMBL OSR05261A [ AGGAGAGGCGAGACGAGGGGGGAATCGAGGCGCGAGGGAGAGGGAGAGGGAGAGGGAGATGTCGATCCTGTGGGAGAAGAGCGCGGGGTGGCGGTGGCTGGTGCGGCGGACGCGCGACTCCAAGCCCTTCTTCTTCACCTTCGCGGCGCTGTGCGGCGTTGTCCCGGGCGTCGTCGGCTACGGCGTGATGCAGCTCACCAGCTCCCGCAACGACCAGCTCGAGGCCCANCTCCGATCCACCGNCCGCCCCGAGACCNNGATGATGGGGCAAGTNAACCGGGAGAGACTGGCAGAGTTTCTTNGAGANCTGCAAAGGAAAGAGGNCACAAATTGNCAGATATGTTGCTNGCCCTCAAAG ] [+] EMBL AU096496 [ AGGGAGAGGGAGAGGGAGAGGGAGATGTCGATCCTGTGGGAGAAGAGCGCGGGGTGGCGGTGGCTGGTGCGGCGGACGCGCGACTCCAAGCCCTTCTTCTTCACCTTCGCGGCGCTGTGCGGCGTTGTCCCGGGCGTCGTCGGCTACGGCGTGATGCAGCTCACCAGCTCCCGCAACGACCAGCTCGAGGCCCACCTNCGCTCCACCGCCCGCCCCGAGACCGCGATGATGGGGCAAGTGAACCGGGAGAGACTGGCAGAGTTTCTTGGAGAGCTGCAAAGGAAAGAGGACACAAA TGACAGATATGTTGCTTGCCCTCAAAGGGGA ] [+] EMBL CA753578 [ CGCGGGGTGGCGGTGGCTGGTGCGGCGGACGCGCGACTCCAAGCCCTTCTTCTTCACCTTCGCGGCGCTGTGCGGCGTTGTCCCGGGCGTCGTCGGCTACGGCGTGATGCAGCTCACCAGCTCCCGCAACGACCAGCTCGAGGCCCACCTCCGCTCCACCGCCCGCCCCGAGACCGCGATGATGGGGCAAGTGAACCGGGAGAGACTGGCAGAGTTTCTTGGAGAGCTGCAAAGGAAAGAGGACACAAA TGACCGATATGTTGC TGCCCTCAAAGGGGAGACACTGACGAGGAAGCGGTATGAACGGATTCAGCCTGTCCAACAGGAAGGTACACCGGAGAGTCCGCCTGTCCAGGAGCCAGCTACAACGGAGAGTGTCAAGGCTAAATGATTCATGGTTATTGCTCCGAGAAAGATATGATCCCCTCAAAACCCCTGACCTACATGTGCTGTACCCTTGGAAGGTTAAAATCCACGTTCGTAAGCATCCTTATGCCTCTCGTTTTGGTTTACCTACCAGATTGGTTTCCCCGTTCCCTGATAGTTTAGTTTGCCGTCGATGTCCGGTAATTTTGGGTCTGTGTGCCCATGATCCNNTGTTCCCCTGTGGACCCTTTAAGGTTTTTTTGACCTCC] consensusID : consensus_7923#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 447 fasta sequence [CAGAGTTTCTTGGAGAGCTGCAAAGGAAAGAGGACACAAATGACAGATATGTTGCTGCCCTCAAAGGGGAGACACTGACGAGGAAGCGGTATGAACGGATTCAGCCTGTCAACAAGGAAGGTACACCGGAGAGTCCGCCTGTCAAGGAGCAAGCTACAACGGAGAGTGTCAAGGCTAAATGATTCATGGTTATTGCTCCGAGAAAGATATTATCCACTCAAAACACTGAACATAAATGTGCTGTACCTTTGGAAGGTTGAATTCAAAGTTCGTAAGCATCATTATGCATCTAGTTTTTGTTTAACTACAAGATGGGTTCACAGTACACTGATATTTTAGTTGCAGTTGATGTCCTGTAAATTTTGGTCTGTGTGCCCATGATCAATTTTTAGCATGTTGGACTCTTTTTAGTATATTTTGACATCACATCATAAAAAAAAAAAAAAA] [+] EMBL AU095424 [CAGAGTTTCTTGGAGAGCTGCAAAGGAAAGAGGACACAAATGACAGATATGTTGCTGCCCTCAAAGGGGAGACACTGACGAGGAAGCGGTATGAACGGATTCAGCCTGTCAACAAGGAAGGTACACCGGAGAGTCCGCCTGTCAAGGAGCAAGCTACAACGGAGAGTGTCAAGGCTAAATGATTCATGGTTATTGCTCCGAGAAAGATATTATCCACTCAAAACACTGAACATAAATGTGCTGTACCTTTGGAAGGTTGAATTCAAAGTTCGTAAGCATCATTATGCATCTAGTTTTTGTTTAACTACAAGATGGGTTCACAGTACACTGATATTTTAGTTGCAGTTGATGTCCTGTAAATTTTGGTCTGTGTGCCCATGATCAATTTTTAGCATGTTGGACTCTTTTTAGTATATTTTGACATCACATCATAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7923#0 TGAGGAGAGGAGAGGCGAGACGAGGGGGGAATCGAGGCGCGAGGGAGAGGGAGAGGGAGA 60 consensus_7923#1 ------------------------------------------------------------ consensus_7923#0 GGGAGATGTCGATCCTGTGGGAGAAGAGCGCGGGGTGGCGGTGGCTGGTGCGGCGGACGC 120 consensus_7923#1 ------------------------------------------------------------ consensus_7923#0 GCGACTCCAAGCCCTTCTTCTTCACCTTCGCGGCGCTGTGCGGCGTTGTCCCGGGCGTCG 180 consensus_7923#1 ------------------------------------------------------------ consensus_7923#0 TCGGCTACGGCGTGATGCAGCTCACCAGCTCCCGCAACGACCAGCTCGAGGCCCACCTCC 240 consensus_7923#1 ------------------------------------------------------------ consensus_7923#0 GCTCCACCGCCCGCCCCGAGACCGCGATGATGGGGCAAGTGAACCGGGAGAGACTGGCAG 300 consensus_7923#1 ---------------------------------------------------------CAG 3 *** consensus_7923#0 AGTTTCTTGGAGAGCTGCAAAGGAAAGAGGACACAAATGACAGATATGTTGCTTGCCCTC 360 consensus_7923#1 AGTTTCTTGGAGAGCTGCAAAGGAAAGAGGACACAAATGACAGATATGTTGCT-GCCCTC 62 ***************************************************** ****** consensus_7923#0 AAAGGGGAGACACTGACGAGGAAGCGGTATGAACGGATTCAGCCTGTCCAACAGGAAGGT 420 consensus_7923#1 AAAGGGGAGACACTGACGAGGAAGCGGTATGAACGGATTCAGCCTGTCAACAAGGAAGGT 122 ************************************************ * ******** consensus_7923#0 ACACCGGAGAGTCCGCCTGTCCAGGAGCCAGCTACAACGGAGAGTGTCAAGGCTAAATGA 480 consensus_7923#1 ACACCGGAGAGTCCGCCTGTCAAGGAGCAAGCTACAACGGAGAGTGTCAAGGCTAAATGA 182 ********************* ****** ******************************* consensus_7923#0 TTCATGGTTATTGCTCCGAGAAAGATATGATCCCCTCAAAACCCCTGACCTACATGTGCT 540 consensus_7923#1 TTCATGGTTATTGCTCCGAGAAAGATATTATCCACTCAAAACACTGAACATAAATGTGCT 242 **************************** **** ******** * ** ** ******* consensus_7923#0 GTACCCTTGGAAGGTTAAAATCCACGTTCGTAAGCATCCTTATGCCTCTCGTTTTGGTTT 600 consensus_7923#1 GTACCTTTGGAAGGTTGAATTCAAAGTTCGTAAGCATCATTATGCATCTAGTTTTTGTTT 302 ***** ********** ** ** * ************* ****** *** ***** **** consensus_7923#0 ACCTACCAGATTGGTTTCCCCGTTCCCTGATAGTTTAGTTTGCCGTCGATGTCCGGTAAT 660 consensus_7923#1 AACTACAAGATGGGTT-CACAGTACACTGATATTTTAGTT-GCAGTTGATGTCCTGTAAA 360 * **** **** **** * * ** * ****** ******* ** ** ******* **** consensus_7923#0 TTTGGGTCTGTGTGCCCATGATCCNNTGTTCCCCTGT-GGACCCTTTAAGGTTT-TTTTG 718 consensus_7923#1 TTTTGGTCTGTGTGCCCATGATCAATTTTTAGCATGTTGGACTCTTTTTAGTATATTTTG 420 *** ******************* * ** * *** **** **** ** * ***** consensus_7923#0 ACCTCC--------------------- 724 consensus_7923#1 ACATCACATCATAAAAAAAAAAAAAAA 447 ** ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||