cluster # 794

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Oryza sativa
cluster # 794 cluster # 794 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_794#0 length = 779 sequences # 1

consensus_794#1 length = 697 sequences # 1

consensusID : consensus_794#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 779
fasta sequence

                              [TCTAATATTCAAAATATTTCTGAACAATACCACATGCATCCACAACATTGACTACAGAAGTAGTTAGATCTAGCAAAATACAATTACAATAATCCATATGTCAAATAAGATCATCCAGGGAAAAAATCCATATGTCAAATATAATTACATTTAAATCAACAAATATATCCAAAGGCAAAGGCTATGGTTGTGATTCAAGGCAGTAGCCTATTTAGATGTGAATCTTTTGACATTTTAATACATTCATGGCATTTACAGTAATTAATAAGCCATTGTTTGTTCAATGTAAGGCTTCAACTTGACATGGTATTTGATATCGCAGTGTCGCCATGTTGTCAGGTCCATTTTTCCTATAGTAGTGGAATCAGGCAATATGTTGAAGGGCACTACCAAGTGATAACAGTGGAGTTTTAAGAAAGGGACATAACAGAAGCAAAAGATCTTCAGGTGCATGATCTCCTTGAGATTCCATCCGAAACCAGTGAACCAGATCCATCATTTGAGGTTGTAGCTGTGTAAGCCGGCACTGATGTACCATTAGCATCCATACAAGGAGTTGGGATACCAGCAAGTTTAGACACAACACTGTGCAACCAATCAAGTTGTTTTTGTTGAGATTCAAGCTGGTTTTGTTGTACTGCAAGTTGGTTTTGCTGTACTGCAACAGTTTGTTTTGTAGAAGCCAACTCTTCTTCCATCTGTTGATAGGTCCTTGTTGAAGTTGATGTAGCTCTTCTATTAGGTTTTGGGCCATGACCTCTCCCTCTAATATACCCATA]

[+] EMBL CB632437             [TCTAATATTCAAAATATTTCTGAACAATACCACATGCATCCACAACATTGACTACAGAAGTAGTTAGATCTAGCAAAATACAATTACAATAATCCATATGTCAAATAAGATCATCCAGGGAAAAAATCCATATGTCAAATATAATTACATTTAAATCAACAAATATATCCAAAGGCAAAGGCTATGGTTGTGATTCAAGGCAGTAGCCTATTTAGATGTGAATCTTTTGACATTTTAATACATTCATGGCATTTACAGTAATTAATAAGCCATTGTTTGTTCAATGTAAGGCTTCAACTTGACATGGTATTTGATATCGCAGTGTCGCCATGTTGTCAGGTCCATTTTTCCTATAGTAGTGGAATCAGGCAATATGTTGAAGGGCACTACCAAGTGATAACAGTGGAGTTTTAAGAAAGGGACATAACAGAAGCAAAAGATCTTCAGGTGCATGATCTCCTTGAGATTCCATCCGAAACCAGTGAACCAGATCCATCATTTGAGGTTGTAGCTGTGTAAGCCGGCACTGATGTACCATTAGCATCCATACAAGGAGTTGGGATACCAGCAAGTTTAGACACAACACTGTGCAACCAATCAAGTTGTTTTTGTTGAGATTCAAGCTGGTTTTGTTGTACTGCAAGTTGGTTTTGCTGTACTGCAACAGTTTGTTTTGTAGAAGCCAACTCTTCTTCCATCTGTTGATAGGTCCTTGTTGAAGTTGATGTAGCTCTTCTATTAGGTTTTGGGCCATGACCTCTCCCTCTAATATACCCATA]




>consensus_794#0
TCTAATATTCAAAATATTTCTGAACAATACCACATGCATCCACAACATTGACTACAGAAG
TAGTTAGATCTAGCAAAATACAATTACAATAATCCATATGTCAAATAAGATCATCCAGGG
AAAAAATCCATATGTCAAATATAATTACATTTAAATCAACAAATATATCCAAAGGCAAAG
GCTATGGTTGTGATTCAAGGCAGTAGCCTATTTAGATGTGAATCTTTTGACATTTTAATA
CATTCATGGCATTTACAGTAATTAATAAGCCATTGTTTGTTCAATGTAAGGCTTCAACTT
GACATGGTATTTGATATCGCAGTGTCGCCATGTTGTCAGGTCCATTTTTCCTATAGTAGT
GGAATCAGGCAATATGTTGAAGGGCACTACCAAGTGATAACAGTGGAGTTTTAAGAAAGG
GACATAACAGAAGCAAAAGATCTTCAGGTGCATGATCTCCTTGAGATTCCATCCGAAACC
AGTGAACCAGATCCATCATTTGAGGTTGTAGCTGTGTAAGCCGGCACTGATGTACCATTA
GCATCCATACAAGGAGTTGGGATACCAGCAAGTTTAGACACAACACTGTGCAACCAATCA
AGTTGTTTTTGTTGAGATTCAAGCTGGTTTTGTTGTACTGCAAGTTGGTTTTGCTGTACT
GCAACAGTTTGTTTTGTAGAAGCCAACTCTTCTTCCATCTGTTGATAGGTCCTTGTTGAA
GTTGATGTAGCTCTTCTATTAGGTTTTGGGCCATGACCTCTCCCTCTAATATACCCATA

consensusID : consensus_794#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 697
fasta sequence

                              [TTTTTTTTTTTTTTTAGTTAGATCTAGCAAAATACAATTACAATAATCCATATGTCAAATAAGATCATCCAGGGAAAAAATCCATATGTCAAATATAATTACATTTAAATCAACAAATATATCCAAAGGCAAAGGCTATGGTTGTGATTCAAGGCAGTAGCCTATTTAGATGTGAATCTTTTGACATTTTAATACATTCATGGCATTTACAGTAATTAATAAGCCATTGTTTGTTCAATGTAAGGCTTCAACTTGACATGGTATTTGATATCGCAGTGTCGCCATGTTGTCAGGTCCATTTTTCCTATAGTAGTGGAATCAGGCAATATGTTGAAGGGCACTACCAAGTGATAACAGTGGAGTTTTAAGAAAGGGACATAACAGAAGCAAAAGATCTTCAGGTGCATGATCTCCTTGAGATTCCATCCGAAACCAGTGAACCAGATCCATCATTTGAGGTTGTAGCTGTGTAAGCCGGCACTGATGTACCATTAGCATCCATACAAGGAGTTGGGATACCAGCAAGTTTAGACACAACACTGTGCAACCAATCAAGTTGTTTTTGTTGAGATTCAAGCTGGTTTTGTTGTACTGCAAGTTGGGTTTGCTGGACTGCAACAGTTTGTTTTGTAGAAGCCAACTCTTCTTCCATCTGTTGATAGGTCCTTGGTGAAAGTGATGTAACTCTTTTATTAGT]

[+] EMBL CA759189             [TTTTTTTTTTTTTTTAGTTAGATCTAGCAAAATACAATTACAATAATCCATATGTCAAATAAGATCATCCAGGGAAAAAATCCATATGTCAAATATAATTACATTTAAATCAACAAATATATCCAAAGGCAAAGGCTATGGTTGTGATTCAAGGCAGTAGCCTATTTAGATGTGAATCTTTTGACATTTTAATACATTCATGGCATTTACAGTAATTAATAAGCCATTGTTTGTTCAATGTAAGGCTTCAACTTGACATGGTATTTGATATCGCAGTGTCGCCATGTTGTCAGGTCCATTTTTCCTATAGTAGTGGAATCAGGCAATATGTTGAAGGGCACTACCAAGTGATAACAGTGGAGTTTTAAGAAAGGGACATAACAGAAGCAAAAGATCTTCAGGTGCATGATCTCCTTGAGATTCCATCCGAAACCAGTGAACCAGATCCATCATTTGAGGTTGTAGCTGTGTAAGCCGGCACTGATGTACCATTAGCATCCATACAAGGAGTTGGGATACCAGCAAGTTTAGACACAACACTGTGCAACCAATCAAGTTGTTTTTGTTGAGATTCAAGCTGGTTTTGTTGTACTGCAAGTTGGGTTTGCTGGACTGCAACAGTTTGTTTTGTAGAAGCCAACTCTTCTTCCATCTGTTGATAGGTCCTTGGTGAAAGTGATGTAACTCTTTTATTAGT]




>consensus_794#1
TTTTTTTTTTTTTTTAGTTAGATCTAGCAAAATACAATTACAATAATCCATATGTCAAAT
AAGATCATCCAGGGAAAAAATCCATATGTCAAATATAATTACATTTAAATCAACAAATAT
ATCCAAAGGCAAAGGCTATGGTTGTGATTCAAGGCAGTAGCCTATTTAGATGTGAATCTT
TTGACATTTTAATACATTCATGGCATTTACAGTAATTAATAAGCCATTGTTTGTTCAATG
TAAGGCTTCAACTTGACATGGTATTTGATATCGCAGTGTCGCCATGTTGTCAGGTCCATT
TTTCCTATAGTAGTGGAATCAGGCAATATGTTGAAGGGCACTACCAAGTGATAACAGTGG
AGTTTTAAGAAAGGGACATAACAGAAGCAAAAGATCTTCAGGTGCATGATCTCCTTGAGA
TTCCATCCGAAACCAGTGAACCAGATCCATCATTTGAGGTTGTAGCTGTGTAAGCCGGCA
CTGATGTACCATTAGCATCCATACAAGGAGTTGGGATACCAGCAAGTTTAGACACAACAC
TGTGCAACCAATCAAGTTGTTTTTGTTGAGATTCAAGCTGGTTTTGTTGTACTGCAAGTT
GGGTTTGCTGGACTGCAACAGTTTGTTTTGTAGAAGCCAACTCTTCTTCCATCTGTTGAT
AGGTCCTTGGTGAAAGTGATGTAACTCTTTTATTAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_794#0      TCTAATATTCAAAATATTTCTGAACAATACCACATGCATCCACAACATTGACTACAGAAG 60
consensus_794#1      ----------------------------------------------TTTTTTTTTTTTTT 14
                                                                    **   *       

consensus_794#0      TAGTTAGATCTAGCAAAATACAATTACAATAATCCATATGTCAAATAAGATCATCCAGGG 120
consensus_794#1      TAGTTAGATCTAGCAAAATACAATTACAATAATCCATATGTCAAATAAGATCATCCAGGG 74
                     ************************************************************

consensus_794#0      AAAAAATCCATATGTCAAATATAATTACATTTAAATCAACAAATATATCCAAAGGCAAAG 180
consensus_794#1      AAAAAATCCATATGTCAAATATAATTACATTTAAATCAACAAATATATCCAAAGGCAAAG 134
                     ************************************************************

consensus_794#0      GCTATGGTTGTGATTCAAGGCAGTAGCCTATTTAGATGTGAATCTTTTGACATTTTAATA 240
consensus_794#1      GCTATGGTTGTGATTCAAGGCAGTAGCCTATTTAGATGTGAATCTTTTGACATTTTAATA 194
                     ************************************************************

consensus_794#0      CATTCATGGCATTTACAGTAATTAATAAGCCATTGTTTGTTCAATGTAAGGCTTCAACTT 300
consensus_794#1      CATTCATGGCATTTACAGTAATTAATAAGCCATTGTTTGTTCAATGTAAGGCTTCAACTT 254
                     ************************************************************

consensus_794#0      GACATGGTATTTGATATCGCAGTGTCGCCATGTTGTCAGGTCCATTTTTCCTATAGTAGT 360
consensus_794#1      GACATGGTATTTGATATCGCAGTGTCGCCATGTTGTCAGGTCCATTTTTCCTATAGTAGT 314
                     ************************************************************

consensus_794#0      GGAATCAGGCAATATGTTGAAGGGCACTACCAAGTGATAACAGTGGAGTTTTAAGAAAGG 420
consensus_794#1      GGAATCAGGCAATATGTTGAAGGGCACTACCAAGTGATAACAGTGGAGTTTTAAGAAAGG 374
                     ************************************************************

consensus_794#0      GACATAACAGAAGCAAAAGATCTTCAGGTGCATGATCTCCTTGAGATTCCATCCGAAACC 480
consensus_794#1      GACATAACAGAAGCAAAAGATCTTCAGGTGCATGATCTCCTTGAGATTCCATCCGAAACC 434
                     ************************************************************

consensus_794#0      AGTGAACCAGATCCATCATTTGAGGTTGTAGCTGTGTAAGCCGGCACTGATGTACCATTA 540
consensus_794#1      AGTGAACCAGATCCATCATTTGAGGTTGTAGCTGTGTAAGCCGGCACTGATGTACCATTA 494
                     ************************************************************

consensus_794#0      GCATCCATACAAGGAGTTGGGATACCAGCAAGTTTAGACACAACACTGTGCAACCAATCA 600
consensus_794#1      GCATCCATACAAGGAGTTGGGATACCAGCAAGTTTAGACACAACACTGTGCAACCAATCA 554
                     ************************************************************

consensus_794#0      AGTTGTTTTTGTTGAGATTCAAGCTGGTTTTGTTGTACTGCAAGTTGGTTTTGCTGTACT 660
consensus_794#1      AGTTGTTTTTGTTGAGATTCAAGCTGGTTTTGTTGTACTGCAAGTTGGGTTTGCTGGACT 614
                     ************************************************ ******* ***

consensus_794#0      GCAACAGTTTGTTTTGTAGAAGCCAACTCTTCTTCCATCTGTTGATAGGTCCTTGTTGAA 720
consensus_794#1      GCAACAGTTTGTTTTGTAGAAGCCAACTCTTCTTCCATCTGTTGATAGGTCCTTGGTGAA 674
                     ******************************************************* ****

consensus_794#0      GTTGATGTAGCTCTTCTATTAGGTTTTGGGCCATGACCTCTCCCTCTAATATACCCATA 779
consensus_794#1      AGTGATGTAACTCTTTTATTAGT------------------------------------ 697
                       ******* ***** ******