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Oryza sativa
cluster # 7948 cluster # 7948       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7948#0 length = 1308 sequences # 4  
consensus_7948#1 length = 263 sequences # 1  

consensusID : consensus_7948#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1308
fasta sequence
                              [CGCCGCCGCACCCGCCTCCACCATGGCGGCCGTCTCGAGGGGCCTCCTCGCGCGCCTCCGCCACCTCTCCATCGCGGGCCCACGCCTGCCCCCTTGCTGCCGCCCCTTCTCCGCCGAGCCCCTCGTCTCCCACCCCGACGACGACGACGCCGCCGCCGGGGGCGGCGGCGGCGGCGGCGAGGGATCGGGAGGGGGACGGATCATAGAGGCTCGGGCGGGGGTGATGGGCCCGGACTCGCGGCGGACCGGCGTGATCGGCGTCAAGTGCGGCATGTCGGCGATGTGGGACAAGTGGGGCGCCAAGGTGCCCATCACCGTCCTCTGGGTCGACGACAACGTCGTCTGCCAGGTCAAGACCGCCGAGAAGGAGGGGTTCTTCGCGCTTCAGCTTGGAGCAGGCCAAAAGAAGGAAAAACATCTAACAAAACCTGAAGTGGGCCACTTCAGAGCACAAGGAGTCCCTCTAAAGAGAAAACTAAGGGAGTTTCCTGTTACTGAAGATGCACTTATTCCTCTTGGAACAACAATCACAGTTCGCCATTTTGTGCCCGGACAATTTGTGGATGTTACTGGAATCACAAAGGGCAAAGGTTTTGCGGGTGGTATGAAAAGACATGGTTTTAGTGGGATGCCTGCATCACATGGTGCATCTCTATCACATCGGAGCATCGGTTCTACTGGTCAAAGAGATGCTCCTGGAAGGGTCTTCAAAAACAGAAAGATGCCTGGACGTATGGGTGGTGTACAGCGCACCGTGAAAAATGTATGGGTTTATCAAATAGACCCTGCCAGGAACTTATTGTATCTGAAAGGCCAGGTTCCTGGTCCTCAAGGCAGCTTTGTTTTTGTTAAGGACTCAATATACAAGAAACCCGACATAGCTAAGCTGCCTTTCCCAACATATTTCTCACAAGAAGGTGAGTCGGAGGAGCTCCTCGTCGCTGATCTTGGTGACATCGACCCATTCATGGTAGCGGATTAAGATTAGGGCCTACTTTGGAAGGGTCCTTTTGTTTTCTGTGCACTTCAGCTTGACCATCCGACAAAATTGTTAAATTTTGCATGGATATATGAGTAGTTGCTGGATTGCGAGTCATCCCATTACTGGCCCGCCTCTGATCAATGTTGTTCCATGTACACTACTTGGCAAATGTGCCAGGGCCCTAACTCGATTAGGGTTTTGAGCTGATTGTTTGACAAAATGGAACTTTTTTGTTCAATAATTTGTGTAATCTAAGCTTCAGATAGATATATAAAATGGGAAAGATTCACCGCAGAGATAGAAAAAAAAAAAANAAAAAAAAAAAA]

[+] EMBL AK073778             [CGCCGCCGCACCCGCCTCCACCATGGCGGCCGTCTCGAGGGGCCTCCTCGCGCGCCTCCGCCACCTCTCCATCGCGGGCCCACGCCTGCCCCCTTGCTGCCGCCCCTTCTCCGCCGAGCCCCTCGTCTCCCACCCCGACGACGACGACGCCGCCGCCGGGGGCGGCGGCGGCGGCGGCGAGGGATCGGGAGGGGGACGGATCATAGAGGCTCGGGCGGGGGTGATGGGCCCGGACTCGCGGCGGACCGGCGTGATCGGCGTCAAGTGCGGCATGTCGGCGATGTGGGACAAGTGGGGCGCCAAGGTGCCCATCACCGTCCTCTGGGTCGACGACAACGTCGTCTGCCAGGTCAAGACCGCCGAGAAGGAGGGGTTCTTCGCGCTTCAGCTTGGAGCAGGCCAAAAGAAGGAAAAACATCTAACAAAACCTGAAGTGGGCCACTTCAGAGCACAAGGAGTCCCTCTAAAGAGAAAACTAAGGGAGTTTCCTGTTACTGAAGATGCACTTATTCCTCTTGGAACAACAATCACAGTTCGCCATTTTGTGCCCGGACAATTTGTGGATGTTACTGGAATCACAAAGGGCAAAGGTTTTGCGGGTGGTATGAAAAGACATGGTTTTAGTGGGATGCCTGCATCACATGGTGCATCTCTATCACATCGGAGCATCGGTTCTACTGGTCAAAGAGATGCTCCTGGAAGGGTCTTCAAAAACAGAAAGATGCCTGGACGTATGGGTGGTGTACAGCGCACCGTGAAAAATGTATGGGTTTATCAAATAGACCCTGCCAGGAACTTATTGTATCTGAAAGGCCAGGTTCCTGGTCCTCAAGGCAGCTTTGTTTTTGTTAAGGACTCAATATACAAGAAACCCGACATAGCTAAGCTGCCTTTCCCAACATATTTCTCACAAGAAGGTGAGTCGGAGGAGCTCCTCGTCGCTGATCTTGGTGACATCGACCCATTCATGGTAGCGGATTAAGATTAGGGCCTACTTTGGAAGGGTCCTTTTGTTTTCTGTGCACTTCAGCTTGACCATCCGACAAAATTGTTAAATTTTGCATGGATATATGAGTAGTTGCTGGATTGCGAGTCATCCCATTACTGGCCCGCCTCTGATCAATGTTGTTCCATGTACACTACTTGGCAAATGTGCCAGGGCCCTAACTCGATTAGGGTTTTGAGCTGATTGTTTGACAAAATGGAACTTTTTTGTTCAATAATTTGTGTAATCTAAGCTTCAGATAGATATATAAAATGGGAAA                                           ]
[+] EMBL AK101781             [      CGCACCCGCCTCCACCATGGCGGCCGTCTCGAGGGGCCTCCTCGCGCGCCTCCGCCACCTCTCCATCGCGGGCCCACGCCTGCCCCCTTGCTGCCGCCCCTTCTCCGCCGAGCCCCTCGTCTCCCACCCCGACGACGACGACGCCGCCGCCGGGGGCGGCGGCGGCGGCGGCGAGGGATCGGGAGGGGGACGGATCATAGAGGCTCGGGCGGGGGTGATGGGCCCGGACTCGCGGCGGACCGGCGTGATCGGCGTCAAGTGCGGCATGTCGGCGATGTGGGACAAGTGGGGCGCCAAGGTGCCCATCACCGTCCTCTGGGTCGACGACAACGTCGTCTGCCAGGTCAAGACCGCCGAGAAGGAGGGGTTCTTCGCGCTTCAGCTTGGAGCAGGCCAAAAGAAGGAAAAACATCTAACAAAACCTGAAGTGGGCCACTTCAGAGCACAAGGAGTCCCTCTAAAGAGAAAACTAAGGGAGTTTCCTGTTACTGAAGATGCACTTATTCCTCTTGGAACAACAATCACAGTTCGCCATTTTGTGCCCGGACAATTTGTGGATGTTACTGGAATCACAAAGGGCAAAGGTTTTGCGGGTGGTATGAAAAGACATGGTTTTAGTGGGATGCCTGCATCACATGGTGCATCTCTATCACATCGGAGCATCGGTTCTACTGGTCAAAGAGATGCTCCTGGAAGGGTCTTCAAAAACAGAAAGATGCCTGGACGTATGGGTGGTGTACAGCGCACCGTGAAAAATGTATGGGTTTATCAAATAGACCCTGCCAGGAACTTATTGTATCTGAAAGGCCAGGTTCCTGGTCCTCAAGGCAGCTTTGTTTTTGTTAAGGACTCAATATACAAGAAACCCGACATAGCTAAGCTGCCTTTCCCAACATATTTCTCACAAGAAGGTGAGTCGGAGGAGCTCCTCGTCGCTGATCTTGGTGACATCGACCCATTCATGGTAGCGGATTAAGATTAGGGCCTACTTTGGAAGGGTCCTTTTGTTTTCTGTGCACTTCAGCTTGACCATCCGACAAAATTGTTAAATTTTGCATGGATATATGAGTAGTTGCTGGATTGCGAGTCATCCCATTACTGGCCCGCCTCTGATCAATGTTGTTCCATGTACACTACTTGGCAAATGTGCCAGGGCCCTAACTCGATTAGGGTTTTGAGCTGATTGTTTGACAAAATGGAACTTTTTTGTTCAATAATTTGTGTAATCTAAGCTTCAGATAGATATATAAAATGGGAAAG                                          ]
[+] EMBL CA766052             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TGGTCAAAGAGATGCTCCTGGAAGGGTCTTCAAAAACAGAAAGATGCCTGGACGTATGGGTGGTGTACAGCGCACCGTGAAAAATGTATGGGTTTATCAAATAGACCCTGCCAGGAACTTATTGTATCTGAAAGGCCAGGTTCCTGGTCCTCAAGGCAGCTTTGTTTTTGTTAAGGACTCAATATACAAGAAACCCGACATAGCTAAGCTGCCTTTCCCAACATATTTCTCACAAGAAGGTGAGTCGGAGGAGCTCCTCGTCGCTGATCTTGGTGACATCGACCCATTCATGGTAGCGGATTAAGATTAGGGCCTACTTTGGAAGGGTCCTTTTGTTTTCTGTGCACTTCAGCTTGACCATCCGACAAAATTGTTAAATTTTGCATGGATATATGAGTAGTTGCTGGATTGCGAGTCATCCCATTACTGGCCCGCCTCTGATCAATGTTGTTCCATGTACACTACTTGGCAAATGTGCCAGGGCCCTAACTCGATTAGGGTTTTGAGCTGATTGTTTGACAAAATGGAACTTTTTTGTTCAATAATTTGTGTAATCTAAGCTTCAGATAGATATATAAAATGGGAAAGATTCACCGCAGAGATAG                         ]
[+] EMBL AU082474             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              AATTTTGCATGGATATATGAGTAGTTGCTGGATTGCGAGTCATCCCATTACTGGCCCGCCTCTGATCAATGTTGTTCCATGTACACTACTTGGCAAATGTGCCAGGGCCCTAACTCGATTAGGGTTTTGAGCTGATTGTTTGACAAAATGGAACTTTTTTGTTCAATAATTTGTGTAATCTAAGCTTCAGATAGATATATAAAATGGGAAAGATTCACCGCAAAAAAAAAAAAAAAAAAAANAAAAAAAAAAAA]


>consensus_7948#0 CGCCGCCGCACCCGCCTCCACCATGGCGGCCGTCTCGAGGGGCCTCCTCGCGCGCCTCCG CCACCTCTCCATCGCGGGCCCACGCCTGCCCCCTTGCTGCCGCCCCTTCTCCGCCGAGCC CCTCGTCTCCCACCCCGACGACGACGACGCCGCCGCCGGGGGCGGCGGCGGCGGCGGCGA GGGATCGGGAGGGGGACGGATCATAGAGGCTCGGGCGGGGGTGATGGGCCCGGACTCGCG GCGGACCGGCGTGATCGGCGTCAAGTGCGGCATGTCGGCGATGTGGGACAAGTGGGGCGC CAAGGTGCCCATCACCGTCCTCTGGGTCGACGACAACGTCGTCTGCCAGGTCAAGACCGC CGAGAAGGAGGGGTTCTTCGCGCTTCAGCTTGGAGCAGGCCAAAAGAAGGAAAAACATCT AACAAAACCTGAAGTGGGCCACTTCAGAGCACAAGGAGTCCCTCTAAAGAGAAAACTAAG GGAGTTTCCTGTTACTGAAGATGCACTTATTCCTCTTGGAACAACAATCACAGTTCGCCA TTTTGTGCCCGGACAATTTGTGGATGTTACTGGAATCACAAAGGGCAAAGGTTTTGCGGG TGGTATGAAAAGACATGGTTTTAGTGGGATGCCTGCATCACATGGTGCATCTCTATCACA TCGGAGCATCGGTTCTACTGGTCAAAGAGATGCTCCTGGAAGGGTCTTCAAAAACAGAAA GATGCCTGGACGTATGGGTGGTGTACAGCGCACCGTGAAAAATGTATGGGTTTATCAAAT AGACCCTGCCAGGAACTTATTGTATCTGAAAGGCCAGGTTCCTGGTCCTCAAGGCAGCTT TGTTTTTGTTAAGGACTCAATATACAAGAAACCCGACATAGCTAAGCTGCCTTTCCCAAC ATATTTCTCACAAGAAGGTGAGTCGGAGGAGCTCCTCGTCGCTGATCTTGGTGACATCGA CCCATTCATGGTAGCGGATTAAGATTAGGGCCTACTTTGGAAGGGTCCTTTTGTTTTCTG TGCACTTCAGCTTGACCATCCGACAAAATTGTTAAATTTTGCATGGATATATGAGTAGTT GCTGGATTGCGAGTCATCCCATTACTGGCCCGCCTCTGATCAATGTTGTTCCATGTACAC TACTTGGCAAATGTGCCAGGGCCCTAACTCGATTAGGGTTTTGAGCTGATTGTTTGACAA AATGGAACTTTTTTGTTCAATAATTTGTGTAATCTAAGCTTCAGATAGATATATAAAATG GGAAAGATTCACCGCAGAGATAGAAAAAAAAAAAANAAAAAAAAAAAA



consensusID : consensus_7948#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 263
fasta sequence
                              [CGCACCCGCCTCCACCATGGCGGCCGTCTCGAGGGGCCTCCTCGCGCGCCTCCGCCACCTCTCCATCGCGGGCCCACGCCTGCCCCCTTGCTGNCGCCCCTTCTCCGCCGAGCCCCTCGTNTCCCACCCCGACGACGACGAGNCNGCCGCCGGGGGGGGGNGCNGNGNANGNGTNATCGGAAGGGGGACGGTTCATAGAGGCTCGGGCGGGGGTAATGGGCCCGGACTCGCGGCGGACCGGCNTGATCGGNGTCAAGTNCGGA]

[+] EMBL AU069389             [CGCACCCGCCTCCACCATGGCGGCCGTCTCGAGGGGCCTCCTCGCGCGCCTCCGCCACCTCTCCATCGCGGGCCCACGCCTGCCCCCTTGCTGNCGCCCCTTCTCCGCCGAGCCCCTCGTNTCCCACCCCGACGACGACGAGNCNGCCGCCGGGGGGGGGNGCNGNGNANGNGTNATCGGAAGGGGGACGGTTCATAGAGGCTCGGGCGGGGGTAATGGGCCCGGACTCGCGGCGGACCGGCNTGATCGGNGTCAAGTNCGGA]


>consensus_7948#1 CGCACCCGCCTCCACCATGGCGGCCGTCTCGAGGGGCCTCCTCGCGCGCCTCCGCCACCT CTCCATCGCGGGCCCACGCCTGCCCCCTTGCTGNCGCCCCTTCTCCGCCGAGCCCCTCGT NTCCCACCCCGACGACGACGAGNCNGCCGCCGGGGGGGGGNGCNGNGNANGNGTNATCGG AAGGGGGACGGTTCATAGAGGCTCGGGCGGGGGTAATGGGCCCGGACTCGCGGCGGACCG GCNTGATCGGNGTCAAGTNCGGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7948#0      CGCCGCCGCACCCGCCTCCACCATGGCGGCCGTCTCGAGGGGCCTCCTCGCGCGCCTCCG 60
consensus_7948#1      ------CGCACCCGCCTCCACCATGGCGGCCGTCTCGAGGGGCCTCCTCGCGCGCCTCCG 54
                            ******************************************************

consensus_7948#0      CCACCTCTCCATCGCGGGCCCACGCCTGCCCCCTTGCTGCCGCCCCTTCTCCGCCGAGCC 120
consensus_7948#1      CCACCTCTCCATCGCGGGCCCACGCCTGCCCCCTTGCTGNCGCCCCTTCTCCGCCGAGCC 114
                      *************************************** ********************

consensus_7948#0      CCTCGTCTCCCACCCCGACGACGACGACGCCGCCGCCGGGGGCGGCGGCGGCGGCGGCGA 180
consensus_7948#1      CCTCGTNTCCCACCCCGACGACGACGAGNCNGCCGCCGGGGGGGGGNGCNGNG--NANGN 172
                      ****** ********************  * *********** **  ** * *     * 

consensus_7948#0      GGGATCGGGAGGGGGACGGATCATAGAGGCTCGGGCGGGGGTGATGGGCCCGGACTCGCG 240
consensus_7948#1      GTNATCGGAAGGGGGACGGTTCATAGAGGCTCGGGCGGGGGTAATGGGCCCGGACTCGCG 232
                      *  ***** ********** ********************** *****************

consensus_7948#0      GCGGACCGGCGTGATCGGCGTCAAGTGCGGCATGTCGGCGATGTGGGACAAGTGGGGCGC 300
consensus_7948#1      GCGGACCGGCNTGATCGGNGTCAAGTNCGGA----------------------------- 263
                      ********** ******* ******* ***                              

consensus_7948#0      CAAGGTGCCCATCACCGTCCTCTGGGTCGACGACAACGTCGTCTGCCAGGTCAAGACCGC 360
consensus_7948#1      ------------------------------------------------------------
                                                                                  

consensus_7948#0      CGAGAAGGAGGGGTTCTTCGCGCTTCAGCTTGGAGCAGGCCAAAAGAAGGAAAAACATCT 420
consensus_7948#1      ------------------------------------------------------------
                                                                                  

consensus_7948#0      AACAAAACCTGAAGTGGGCCACTTCAGAGCACAAGGAGTCCCTCTAAAGAGAAAACTAAG 480
consensus_7948#1      ------------------------------------------------------------
                                                                                  

consensus_7948#0      GGAGTTTCCTGTTACTGAAGATGCACTTATTCCTCTTGGAACAACAATCACAGTTCGCCA 540
consensus_7948#1      ------------------------------------------------------------
                                                                                  

consensus_7948#0      TTTTGTGCCCGGACAATTTGTGGATGTTACTGGAATCACAAAGGGCAAAGGTTTTGCGGG 600
consensus_7948#1      ------------------------------------------------------------
                                                                                  

consensus_7948#0      TGGTATGAAAAGACATGGTTTTAGTGGGATGCCTGCATCACATGGTGCATCTCTATCACA 660
consensus_7948#1      ------------------------------------------------------------
                                                                                  

consensus_7948#0      TCGGAGCATCGGTTCTACTGGTCAAAGAGATGCTCCTGGAAGGGTCTTCAAAAACAGAAA 720
consensus_7948#1      ------------------------------------------------------------
                                                                                  

consensus_7948#0      GATGCCTGGACGTATGGGTGGTGTACAGCGCACCGTGAAAAATGTATGGGTTTATCAAAT 780
consensus_7948#1      ------------------------------------------------------------
                                                                                  

consensus_7948#0      AGACCCTGCCAGGAACTTATTGTATCTGAAAGGCCAGGTTCCTGGTCCTCAAGGCAGCTT 840
consensus_7948#1      ------------------------------------------------------------
                                                                                  

consensus_7948#0      TGTTTTTGTTAAGGACTCAATATACAAGAAACCCGACATAGCTAAGCTGCCTTTCCCAAC 900
consensus_7948#1      ------------------------------------------------------------
                                                                                  

consensus_7948#0      ATATTTCTCACAAGAAGGTGAGTCGGAGGAGCTCCTCGTCGCTGATCTTGGTGACATCGA 960
consensus_7948#1      ------------------------------------------------------------
                                                                                  

consensus_7948#0      CCCATTCATGGTAGCGGATTAAGATTAGGGCCTACTTTGGAAGGGTCCTTTTGTTTTCTG 1020
consensus_7948#1      ------------------------------------------------------------
                                                                                  

consensus_7948#0      TGCACTTCAGCTTGACCATCCGACAAAATTGTTAAATTTTGCATGGATATATGAGTAGTT 1080
consensus_7948#1      ------------------------------------------------------------
                                                                                  

consensus_7948#0      GCTGGATTGCGAGTCATCCCATTACTGGCCCGCCTCTGATCAATGTTGTTCCATGTACAC 1140
consensus_7948#1      ------------------------------------------------------------
                                                                                  

consensus_7948#0      TACTTGGCAAATGTGCCAGGGCCCTAACTCGATTAGGGTTTTGAGCTGATTGTTTGACAA 1200
consensus_7948#1      ------------------------------------------------------------
                                                                                  

consensus_7948#0      AATGGAACTTTTTTGTTCAATAATTTGTGTAATCTAAGCTTCAGATAGATATATAAAATG 1260
consensus_7948#1      ------------------------------------------------------------
                                                                                  

consensus_7948#0      GGAAAGATTCACCGCAGAGATAGAAAAAAAAAAAANAAAAAAAAAAAA 1308
consensus_7948#1      ------------------------------------------------
                                                                      




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)