Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 7950 cluster # 7950       Sequences # 5       consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7950#0 length = 1082 sequences # 5  
consensusID : consensus_7950#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1082
fasta sequence 
                              [ACGCTACTCCCATCCCCACTCTCGTCGCTCGTCGGTATACCAAACCGAAAAGCTAGTCAATCCGACCCCACCCGATCCGATGGCCGCCACATCGCCGGACTCCGGCGACCTCATCCTGGTCGAGCCGGCCAAGCCGGGGTCCCGGGTCGCCGTCGTCACCATCAACCGGCCCAAAGCGCTGAACGCGCTGACGCGGCCCATGATGGTCTCACTGGCCGCGGCGTTCCGGCGGCTGGACGCCGACGACGGGGTGGCGGCGGTGGTGCTCGCGGGGCGCGGCCGCGCGTTCTGCTCCGGCGTGGACCTGACCGCTGCGGAGGAGGTGTTCAAGGGCGACGTGAAGGATCCCGCCGCCGACCCCGTCGTCCAGATGGAGCGCTGTCGCAAGCCCATCGTCGGCGCCATCGCCGGATTCGCCGTCACCGCCGGATTTGAGATCGCCCTCGCCTGCGACATCCTAGTGGCCGGCCGCTCCGCTAAGTTCATCGACACCCACGCCAAGTTTGGGATATTCCCTTCTTGGGGTCTTTCACAGAAGCTTTCTCGTGTCATTGGACCAAATAGAGCACGGGAAGTGTCGTTAACTTGCATGCCTATCACAGCTGAAATGGCGGAGAA-GTGGGGTCTTGTTAACCACATTGTGGATGATACCCAGGTGCTGAGTAAGGCAATAGAGGTCTGTGAGGCCATTGCAAGGAACAATCGCAACTTGGTTGTGTTGTATAAATCTGTTATAAATGACGGGCTCCAGCTGGACTTGGAACATGCTCGAGCTCTTGAAAAGGAAAGAGCTCA-TGACTATTACAATGGTATGACAAAAGAGCAATTCGCAAGTATGCAGAAATTTATACAGGGCCGGAGTTCGAAGCCACCATCAAAGCTGTGATGATATATGTTCTGTACCACTGTATGTACCGAAAT-ATCAATGTACTGTATACATCCACT-GAAGTGTTCAATGACC-TGAAAGAAAAATAAACACTGCCAATGTTGCATACAAAGAAAGTACCATCTTCACATGTGTTATTGGAAGAGTATCGCAGCCTATGCTGCTGTTTTCCATTCTGATGTTGGGCGCCGCGAGC]

[+] EMBL AK068241             [ACGCTACTCCCATCCCCACTCTCGTCGCTCGTCGGTATACCAAACCGAAAAGCTAGTCAATCCGACCCCACCCGATCCGATGGCCGCCACATCGCCGGACTCCGGCGACCTCATCCTGGTCGAGCCGGCCAAGCCGGGGTCCCGGGTCGCCGTCGTCACCATCAACCGGCCCAAAGCGCTGAACGCGCTGACGCGGCCCATGATGGTCTCACTGGCCGCGGCGTTCCGGCGGCTGGACGCCGACGACGGGGTGGCGGCGGTGGTGCTCGCGGGGCGCGGCCGCGCGTTCTGCTCCGGCGTGGACCTGACCGCTGCGGAGGAGGTGTTCAAGGGCGACGTGAAGGATCCCGCCGCCGACCCCGTCGTCCAGATGGAGCGCTGTCGCAAGCCCATCGTCGGCGCCATCGCCGGATTCGCCGTCACCGCCGGATTTGAGATCGCCCTCGCCTGCGACATCCTAGTGGCCGGCCGCTCCGCTAAGTTCATCGACACCCACGCCAAGTTTGGGATATTCCCTTCTTGGGGTCTTTCACAGAAGCTTTCTCGTGTCATTGGACCAAATAGAGCACGGGAAGTGTCGTTAACTTGCATGCCTATCACAGCTGAAATGGCGGAGAA GTGGGGTCTTGTTAACCACATTGTGGATGATACCCAGGTGCTGAGTAAGGCAATAGAGGTCTGTGAGGCCATTGCAAGGAACAATCGCAACTTGGTTGTGTTGTATAAATCTGTTATAAATGACGGGCTCCAGCTGGACTTGGAACATGCTCGAGCTCTTGAAAAGGAAAGAGCTCA TGACTATTACAATGGTATGACAAAAGAGCAATTCGCAAGTATGCAGAAATTTATACAGGGCCGGAGTTCGAAGCCACCATCAAAGCTGTGATGATATATGTTCTGTACCACTGTATGTACCGAAAT ATCAATGTACTGTATACATCCACT GAAGTGTTCAATGACC TGAAAGAAAAATAAACACTGCCAATGTTGCATACAAAGAAAGTACCATCTTCACAT                                                                 ]
[+] EMBL CA755477             [                                                                                                                                                                                                                                                                                                                                                                           CGTCCAGATGGAGCGCTGTCGCAAGCCCATCGTCGGCGCCATCGCCGGATTCGCCGTCACCGCCGGATTTGAGATCGCCCTCGCCTGCGACATCCTAGTGGCCGGCCGCTCCGCTAAGTTCATCGACACCCACGCCAAGTTTGGGATATTCCCTTCTTGGGGTCTTTCACAGAAGCTTTCTCGTGTCATTGGACCAAATAGAGCACGGGAAGTGTCGTTAACTTGCATGCCTATCACAGCTGAAATGGCGGAGAA GTGGGGTCTTGTTAACCACATTGTGGATGATACCCAGGTGCTGAGTAAGGCAATAGAGGTCTGTGAGGCCATTGCAAGGAACAATCGCAACTTGGTTGTGTTGTATAAATCTGTTATAAATGACGGGCTCCAGCTGGACTTGGAACATGCTCGAGCTCTTGAAAAGGAAAGAGCTCA TGACTATTACAATGGTATGACAAAAGAGCAATTCGCAAGTATGCAGAAATTTATACAGGGCCGGAGTTCGAAGCCACCATCANAGCTGTGATGATATATGTTCTGGACCACTGTATGTACCGAAATNATC ATGTACTGTATACATCCACTGGAAGGGTTCAATGACC cct                                                                                                                      ]
[-] EMBL BI306726             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TCGTTAACTTGCATGCCTATCACAGCTGAAATGGCGGAGAA GTGGGGTCTTGTTAACCACATTGTGGATGATACCCAGGTGCTGAGTAAGGCAATAGAGGTCTGTGAGGCCATTGCAAGGAACAATCGCAACTTGGTTGTGTTGTATAAATCTGTTATAAATGACGGGCTCCAGCTGGACTTGGAACATGCTCGAGCTCTTGAAAAGGAAAGAGCTCA TGACTATTACAATGGTATGACAAAAGAGCAATTCGCAAGTATGCAGAAATTTATACAGGGCCGGAGTTCGAAGCCACCATCAAAGCTGTGATGATATATGTTCTGTACCACTGTATGTACCGAAAT ATCAATGTACTGTATACATCCATT GAAGTGTTCAATGACC TGAAAGAAAAATAAACACTGCCAATGTTGCATACAAAGAAAGTACCATCTTCACATGTGTTATTGGAAGAGTATCGCAGCCTATGCTGCTGTTTTCCATTC                    ]
[-] EMBL CB967164             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TGCATGCCTATCACAGCTGAAATGGCGGAGAACGTGGGGTCTTGTTAACCACATTGTGGATGATACCCAGGTGCTGAGTAAGGCAATAGAGGTCTGTGAGGCCATTGCAAGGAACAATCGCAACTTGGTTGTGTTGTATAAATCTGTTATAAATGACGGGCTCCAGCTGGACTTGGAACATGCTCGAGCTCTTGAAAAGGAAAGAGCTCACTGACTATTACGATGGTATGACAAAAGAGCTATTCGCAAGTATGCAGCAATTTATACCGGGCCGGAGTTCGAACCCACCATCAAAGCTGTGATGATATATGTTCTGTACCCCTGTATGTACCGACAT ATCGATGTACTGTATACATCCATT GAAGTGTTCAATGACG TGGAAGCAACATCCACCCTGCCAATGTCGCATAC AAGTAAGTACCCTCTTCACATGTGTTATTGGAAGAGTATCGCAGCCTATGCTGCTGTTTTCCATTCTGATGTTGGGCGCCGCGAGC]
[-] EMBL CB966462             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              AATGACCGTGAAAGAAAAATAAACACTGCCAATGTTGCATACAAAGAAAGTACCATCTTCACATGTGTTATTGGAAGAGTATCGCAGCCTAgc                                    ]




>consensus_7950#0
ACGCTACTCCCATCCCCACTCTCGTCGCTCGTCGGTATACCAAACCGAAAAGCTAGTCAA
TCCGACCCCACCCGATCCGATGGCCGCCACATCGCCGGACTCCGGCGACCTCATCCTGGT
CGAGCCGGCCAAGCCGGGGTCCCGGGTCGCCGTCGTCACCATCAACCGGCCCAAAGCGCT
GAACGCGCTGACGCGGCCCATGATGGTCTCACTGGCCGCGGCGTTCCGGCGGCTGGACGC
CGACGACGGGGTGGCGGCGGTGGTGCTCGCGGGGCGCGGCCGCGCGTTCTGCTCCGGCGT
GGACCTGACCGCTGCGGAGGAGGTGTTCAAGGGCGACGTGAAGGATCCCGCCGCCGACCC
CGTCGTCCAGATGGAGCGCTGTCGCAAGCCCATCGTCGGCGCCATCGCCGGATTCGCCGT
CACCGCCGGATTTGAGATCGCCCTCGCCTGCGACATCCTAGTGGCCGGCCGCTCCGCTAA
GTTCATCGACACCCACGCCAAGTTTGGGATATTCCCTTCTTGGGGTCTTTCACAGAAGCT
TTCTCGTGTCATTGGACCAAATAGAGCACGGGAAGTGTCGTTAACTTGCATGCCTATCAC
AGCTGAAATGGCGGAGAAGTGGGGTCTTGTTAACCACATTGTGGATGATACCCAGGTGCT
GAGTAAGGCAATAGAGGTCTGTGAGGCCATTGCAAGGAACAATCGCAACTTGGTTGTGTT
GTATAAATCTGTTATAAATGACGGGCTCCAGCTGGACTTGGAACATGCTCGAGCTCTTGA
AAAGGAAAGAGCTCATGACTATTACAATGGTATGACAAAAGAGCAATTCGCAAGTATGCA
GAAATTTATACAGGGCCGGAGTTCGAAGCCACCATCAAAGCTGTGATGATATATGTTCTG
TACCACTGTATGTACCGAAATATCAATGTACTGTATACATCCACTGAAGTGTTCAATGAC
CTGAAAGAAAAATAAACACTGCCAATGTTGCATACAAAGAAAGTACCATCTTCACATGTG
TTATTGGAAGAGTATCGCAGCCTATGCTGCTGTTTTCCATTCTGATGTTGGGCGCCGCGA
GC

clustalw multiple alignements is not computed in this case
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)