These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7954#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1393 fasta sequence [TCGGCGGCGGCGAGCAATCCCACCGCCGGTTGCCGTCTCCACCTTCCGCGGCGGCCGCGCGTCGGCTGCGAGTTTCTCTGGAATCTCTGGAATCCCTCGTCTGACCGAGGAAGAGCGGCGGGGGTGACGAGATGTCGGGGTTCGGGGACGGGTACGTCGGCACGGCTCAGGACGCCGTGAAGATCCGGCGGCTGGAGAAGCAGCGGGAGGCGGAGCGCCGCAAGATCGAGGAGCTCAAGAACAAGTCCTCCGATGGCCAGCCCGGCCTGCTCCAGTTCGGCTCCAGCACCTCCGAGATTCTTGAGACTGCGTTTAAGAAGGAAACAGTCGGTTTAGTTACAAGGGAGCAGTATGTCGAGAAGAGGGTTAATATACGGACCAAAATTGAGGAAGAAGAGAAGGAGAAGCTTCAAAAGTTGCAACAAGAGGAAGAAGAATTGCAAATGCAAAAGCGGAAAAAGAGGAGAGTGAGGGGAGATCCACGGTTATCTTTCTGTGATGAGATTGAGAATGGAAGTGATGAGGATGAATTTGAGAATCAAGAACCTCAAAAGAAACATGGTCCTGTCAAACTTGGGAAGGACCCTACTGTTGAGACAAGTTTTCTTCCTGACAGGGAGAGAGAAGCAGAGGAACAAGCAGAGCGAGAGCGTTTGAAGAAACAATGGTCGCGTGAGCAGGAACTGATTAAAAATGAACCTCTGACAATTACTTACAGTTACTGGGATGGCACTGGGCATAGGAGAGTTATCCAGGTCCGTAAAGGTGACTCCATTGGAGAATTCCTAAGGGCTGTTCAGCAGCAGCTTGCCCCTGAGTTCCGTGAAGTGCGGACAACATCAGTTGAGAATCTTCTTTATGTGAAGGAAGATCTTATTATCCCTCATCAACATAGCTTCTATGAGTTGATTATCAACAAAGCAAGGGGCAAGAGTGGACCGCTTTTCCACTTTGATGTTCATGAGGATGTGCGGACCATTGCTGATGCAACAAAAGAAAAGGACGAGTCTCATGCGGGAAAAGTCGTAGAGAGACACTGGTATGAGAAAAACAAACATATATTTCCTGCATCAAGATGGGAGATCTATGATCCTACCAAGAAGTGGGAGCGTTACACGATCCATGGAGATTAAAAATCATAATAATATACAGCAGAAATTGAGAGCCTTGAACCTGCGCATGTTTCTACTTTGGATTTCTGCAACAGTTATTACAGTAATTGTA-CGGTTGTGCCAAAGATCATTAGTGTTTGGAAAGAATTCACACTCTAACTGTATGCTTTTTACCA-TTTTGTGGAACGCCAATTCCATGTAACTGAACTAATGTTCAAATCAACTAGCTGTGAATGTTTTCATACTCGTTTTGGATATCCGTTTGCGTGGGAGTATGGGAG] [+] EMBL CB653059 [TCGGCGGCGGCGAGCAATCCCACCGCCGGTTGCCGTCTCCACCTTCCGCGGCGGCCGCGCGTCGGCTGCGAGTTTCTCTGGAATCTCTGGAATCCCTCGTCTGACCGAGGAAGAGCGGCGGGGGTGACGAGATGTCGGGGTTCGGGGACGGGTACGTCGGCACGGCTCAGGACGCCGTGAAGATCCGGCGGCTGGAGAAGCAGCGGGAGGCGGAGCGCCGCAAGATCGAGGAGCTCAAGAACAAGTCCTCCGATGGCCAGCCCGGCCTGCTCCAGTTCGGCTCCAGCACCTCCGAGATTCTTGAGACTGCGTTTAAGAAGGAAACAGTCGGTTTAGTTACAAGGGAGCAGTATGTCGAGAAGAGGGTTAATATACGGACCAAAATTGAGGAAGAAGAGAAGGAGAAGCTTCAAAAGTTGCAACAAGAGGAAGAAGAATTGCAAATGCAAAAGCGGAAAAAGAGGAGAGTGAGGGGAGATCCACGGTTATCTTTCTGTGATGAGATTGAGAATGGAAGTGATGAGGATGAATTTGAGAATCAAGAACCTCAAAAGAAACATGGTCCTGTCAAACTTGGGAAGGACCCTACTGTTGAGACAAGTTTTCTTCCTGACAGGGAGAGAGAAGCAGAGGAACAAGCAGAGCGAGAGCGTTTGAAGAAACAATGGTCGCGTGAGCAGGAACTGATTAAAAATGAACCTCTGACAATTACTTACAGTTACTGGGATGGCACTGNGCATAGGAGAGT ] [+] EMBL AK071211 [ ATCCCACCGCCGGTTGCCGTCTCCACCTTCCGCGGCGGCCGCGCGTCGGCTGCGAGTTTCTCTGGAATCTCTGGAATCCCTCGTCTGACCGAGGAAGAGCGGCGGGGGTGACGAGATGTCGGGGTTCGGGGACGGGTACGTCGGCACGGCTCAGGACGCCGTGAAGATCCGGCGGCTGGAGAAGCAGCGGGAGGCGGAGCGCCGCAAGATCGAGGAGCTCAAGAACAAGTCCTCCGATGGCCAGCCCGGCCTGCTCCAGTTCGGCTCCAGCACCTCCGAGATTCTTGAGACTGCGTTTAAGAAGGAAACAGTCGGTTTAGTTACAAGGGAGCAGTATGTCGAGAAGAGGGTTAATATACGGACCAAAATTGAGGAAGAAGAGAAGGAGAAGCTTCAAAAGTTGCAACAAGAGGAAGAAGAATTGCAAATGCAAAAGCGGAAAAAGAGGAGAGTGAGGGGAGATCCACGGTTATCTTTCTGTGATGAGATTGAGAATGGAAGTGATGAGGATGAATTTGAGAATCAAGAACCTCAAAAGAAACATGGTCCTGTCAAACTTGGGAAGGACCCTACTGTTGAGACAAGTTTTCTTCCTGACAGGGAGAGAGAAGCAGAGGAACAAGCAGAGCGAGAGCGTTTGAAGAAACAATGGTCGCGTGAGCAGGAACTGATTAAAAATGAACCTCTGACAATTACTTACAGTTACTGGGATGGCACTGGGCATAGGAGAGTTATCCAGGTCCGTAAAGGTGACTCCATTGGAGAATTCCTAAGGGCTGTTCAGCAGCAGCTTGCCCCTGAGTTCCGTGAAGTGCGGACAACATCAGTTGAGAATCTTCTTTATGTGAAGGAAGATCTTATTATCCCTCATCAACATAGCTTCTATGAGTTGATTATCAACAAAGCAAGGGGCAAGAGTGGACCGCTTTTCCACTTTGATGTTCATGAGGATGTGCGGACCATTGCTGATGCAACAAAAGAAAAGGACGAGTCTCATGCGGGAAAAGTCGTAGAGAGACACTGGTATGAGAAAAACAAACATATATTTCCTGCATCAAGATGGGAGATCTATGATCCTACCAAGAAGTGGGAGCGTTACACGATCCATGGAGATTAAAAATCATAATAATATACAGCAGAAATTGAGAGCCTTGAACCTGCGCATGTTTCTACTTTGGATTTCTGCAACAGTTATTACAGTAATTGTA CGGTTGTGCCAAAGATCATTAGTGTTTGGAAAGAATTCACACTCTAACTGTATGCTTTTTACCA TTTTGTGGAACGCCAATTCCATGTAACTGAACTAATGTTCAAATCAACTAGCTGTGAATGTTTTCATACTCGTTTTGGATATCCGTTTGCGTGGGAGTATGGGAG] [+] EMBL CA763974 [ CGAGAGCGTTTGAAGAAACAATGGTCGCGTGAGCAGGTACTGATTAAAAATGAACCTCTGACAATTACTTACAGTTACTGGGATGGCACTGGGCATAGGAGAGTTATCCAGGTCCGTAAAGGTGACTCCATTGGAGAATTCCTAAGGGCTGTTCAGCAGCAGCTTGCCCCTGAGTTCCGTGAAGTGCGGACAACATCAGTTGAGAATCTTCTTTATGTGAAGGAAGATCTTATTATCCCTCATCAACATAGCTTCTATGAGTTGATTATCAACAAAGCAAGGGGCAAGAGTGGACCGCTTTTCCACTTTGATGTTCATGAGGATGTGCGGACCATTGCTGATGCAACAAAAGAAAAGGACGAGTCTCATGCGGGAAAAGTCGTAGAGAGACACTGGTATGAGAAAAACAAACATATATTTCCTGCATCAAGATGGGAGATCTATGATCCTACCAAGAAGTGGGAGCGTTACACGATCCATGGAGATTAAAAATCATAATAATATACAGCAGAAATTGAGAGCCTTGAACCTGCGCATGTTTCTACTTTGGATTTCTGCAACAGTTATTACAGTAATTGTACCGGNTGTGCCAAAGATCATTAGTGNTTGGAAAGAATTCACACTCTAACTGTATGCTTTTTACCATTTTTGTGGAACGNCAATTNCATGTAACTGAACTAACGGTCAAATCAACTAGCTGNGGATGGTTTCATAC ] consensusID : consensus_7954#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 607 fasta sequence [GGAGGAGAAGCTTCAAAAGTTGCAACAAGAGGAAGAAGAATTGCAAATGCAAAAGCGGAAAAAGAGGAGAGTGAGGGGAGATCCACGGTTATCTTTCTGTGATGAGATTGAGAATGGAAGTGATGAGGATGAATTTGATTTTTTTATGGTCCTCTTAACCTTTCTAGGGTCTTGTGATATCCTATTTTGTATTACCATGTTCTAACTTTTTTGTTAATGTTTGAACATCTCATGTGACGTCCCTTAAATGAATCAACTCGACAAACTAATTTAGTCAAAGCATCTAAGCAAAGATTGGGTCCTGGGCAGGGTTTCATTCAGAATGAACATTCTCTCTCTATTGTTTACGTTATGAATTGGCAGTTTAGTGCCATGGGGTTTGTGTTTGTACTGTCCTTTTTTTGTGTGTGTGTCCTGAATCTTGATTTGTTTAAGTTTGTGAAGTTACCTTACCTGTAAAGCAAGTATGGACATTATGCTTTAAATTGTTTTACAGAAGAACCTCANAAGAAACATGGTCCTGTCAAACTTGNGAAGGACCCTACTGTTGAGACAAGTTTTCTTCCTGACAGGTATTCTTTTAGTTTATGATTATCTTTCTGTGATG] [+] EMBL CF307471 [GGAGGAGAAGCTTCAAAAGTTGCAACAAGAGGAAGAAGAATTGCAAATGCAAAAGCGGAAAAAGAGGAGAGTGAGGGGAGATCCACGGTTATCTTTCTGTGATGAGATTGAGAATGGAAGTGATGAGGATGAATTTGATTTTTTTATGGTCCTCTTAACCTTTCTAGGGTCTTGTGATATCCTATTTTGTATTACCATGTTCTAACTTTTTTGTTAATGTTTGAACATCTCATGTGACGTCCCTTAAATGAATCAACTCGACAAACTAATTTAGTCAAAGCATCTAAGCAAAGATTGGGTCCTGGGCAGGGTTTCATTCAGAATGAACATTCTCTCTCTATTGTTTACGTTATGAATTGGCAGTTTAGTGCCATGGGGTTTGTGTTTGTACTGTCCTTTTTTTGTGTGTGTGTCCTGAATCTTGATTTGTTTAAGTTTGTGAAGTTACCTTACCTGTAAAGCAAGTATGGACATTATGCTTTAAATTGTTTTACAGAAGAACCTCANAAGAAACATGGTCCTGTCAAACTTGNGAAGGACCCTACTGTTGAGACAAGTTTTCTTCCTGACAGGTATTCTTTTAGTTTATGATTATCTTTCTGTGATG] consensusID : consensus_7954#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 228 fasta sequence [AGAGCCTTGAACCTGCGCATGTTTCTACTTTGGATTTCTGCAACAGTTATTACAGTAATTGTACGGTTGTGCCAAAGATCATTAGTGTTTGGAAAGAATTCACACTCTAACTGTATGCTTTTTACCATTTTGTGGAACGCCAATTCCATGTAACTGAACTAATGTTCAAATCAACTAGCTGTGAATGTTTTCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU058068 [AGAGCCTTGAACCTGCGCATGTTTCTACTTTGGATTTCTGCAACAGTTATTACAGTAATTGTACGGTTGTGCCAAAGATCATTAGTGTTTGGAAAGAATTCACACTCTAACTGTATGCTTTTTACCATTTTGTGGAACGCCAATTCCATGTAACTGAACTAATGTTCAAATCAACTAGCTGTGAATGTTTTCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7954#0 TCGGCGGCGGCGAGCAATCCCACCGCCGGTTGCCGTCTCCACCTTCCGCGGCGGCCGCGC 60 consensus_7954#2 ------------------------------------------------------------ consensus_7954#1 ------------------------------------------------------------ consensus_7954#0 GTCGGCTGCGAGTTTCTCTGGAATCTCTGGAATCCCTCGTCTGACCGAGGAAGAGCGGCG 120 consensus_7954#2 ------------------------------------------------------------ consensus_7954#1 ------------------------------------------------------------ consensus_7954#0 GGGGTGACGAGATGTCGGGGTTCGGGGACGGGTACGTCGGCACGGCTCAGGACGCCGTGA 180 consensus_7954#2 ------------------------------------------------------------ consensus_7954#1 ------------------------------------------------------------ consensus_7954#0 AGATCCGGCGGCTGGAGAAGCAGCGGGAGGCGGAGCGCCGCAAGATCGAGGAGCTCAAGA 240 consensus_7954#2 ------------------------------------------------------------ consensus_7954#1 ------------------------------------------------------------ consensus_7954#0 ACAAGTCCTCCGATGGCCAGCCCGGCCTGCTCCAGTTCGGCTCCAGCACCTCCGAGATTC 300 consensus_7954#2 ------------------------------------------------------------ consensus_7954#1 ------------------------------------------------------------ consensus_7954#0 TTGAGACTGCGTTTAAGAAGGAAACAGTCGGTTTAGTTACAAGGGAGCAGTATGTCGAGA 360 consensus_7954#2 ------------------------------------------------------------ consensus_7954#1 ------------------------------------------------------------ consensus_7954#0 AGAGGGTTAATATACGGACCAAAATTGAGGAAGAAGAGAAGGAGAAGCTTCAAAAGTTGC 420 consensus_7954#2 ------------------------------------------------------------ consensus_7954#1 ------------------------------------------------------------ consensus_7954#0 AACAAGAGGAAGAAGAATTGCAAATGCAAAAGCGGAAAAAGAGGAGAGTGAGGGGAGATC 480 consensus_7954#2 ------------------------------------------------------------ consensus_7954#1 ------------------------------------------------------------ consensus_7954#0 CACGGTTATCTTTCTGTGATGAGATTGAGAATGGAAGTGATGAGGATGAATTTGAGAATC 540 consensus_7954#2 ------------------------------------------------------------ consensus_7954#1 ------------------------------------------------------------ consensus_7954#0 AAGAACCTCAAAAGAAACATGGTCCTGTCAAACTTGGGAAGGACCCTACTGTTGAGACAA 600 consensus_7954#2 ------------------------------------------------------------ consensus_7954#1 ------------------------------------------------------------ consensus_7954#0 GTTTTCTTCCTGACAGGGAGAGAGAAGCAGAGGAACAAGCAGAGCGAGAGCGTTTGAAGA 660 consensus_7954#2 ------------------------------------------------------------ consensus_7954#1 ------------------------------------------------------------ consensus_7954#0 AACAATGGTCGCGTGAGCAGGAACTGATTAAAAATGAACCTCTGACAATTACTTACAGTT 720 consensus_7954#2 ------------------------------------------------------------ consensus_7954#1 ------------------------------------------------------------ consensus_7954#0 ACTGGGATGGCACTGGGCATAGGAGAGTTATCCAGGTCCGTAAAGGTGACTCCATTGGAG 780 consensus_7954#2 ------------------------------------------------------------ consensus_7954#1 -------------------------------------------GGAGGAGAAGCTTCAAA 17 consensus_7954#0 AATTCCTAAGGGCTGTTCAGCAGCAGCTTGCCCCTGAGTTCCGTGAAGTGCGGACAACAT 840 consensus_7954#2 ------------------------------------------------------------ consensus_7954#1 AGTTGCAACAAGAGGAAGAAGAATTGCAAATGCAAAAGCGGAAAAAGAGGAGAGTGAGGG 77 consensus_7954#0 CAG-TTGAGAATCTTCTTTATGTGAAGGAAGATCTTATTATCCCTCATCAACATAGCTTC 899 consensus_7954#2 ------------------------------------------------------------ consensus_7954#1 GAGATCCACGGTTATCTTTCTGTGATGAGAT-TGAGAATGGAAGTGATGAGGATGAATTT 136 consensus_7954#0 TATGAGTTGATTATCAACAAAGCAAGGGGCAAGAGTGGACCGCTTTTCCACTTTGATGTT 959 consensus_7954#2 ------------------------------------------------------------ consensus_7954#1 GATTTTTTTATGGTCCTCTTAACCTTT--CTAGGGTCTTGTGATATCCTATTTTG----- 189 consensus_7954#0 CATGAGGATGTGCGGACCATTGCTGATGCAACAAAAGAAAAGGACGAGTCTCATGCGGGA 1019 consensus_7954#2 ------------------------------------------------------------ consensus_7954#1 TATTACCATGTTCTAACT-TTTTTGTTAATGTTTGAACATCTCATGTGACGTCCCTTAAA 248 consensus_7954#0 AAAGTCGTAGAGAGACACTGGTATGAGAAAAACAAACATATATTTCCTGCATCAAGATGG 1079 consensus_7954#2 ------------------------------------------------------------ consensus_7954#1 TGAATCAACTCGACAAACTAATTTAGTCAAAGCATCTAAGCAAAGATTGGGTCC---TGG 305 consensus_7954#0 GAGATCTATGATCCTACCAAGAAGTGGGAGCGTTACACGATCCATGGAGATTAAAAATCA 1139 consensus_7954#2 ------------------------------------------------------------ consensus_7954#1 GCAGGGTTTCATTCAGAATGAACATTCTCTCTCTATTGTTTACGTTATGAATTGGCAGTT 365 consensus_7954#0 TAATAATATACAGCAGAAATTGAGA--GCCTTGAACCTGCGCATGTTTCT--ACTTTGGA 1195 consensus_7954#2 ----------------------AGA--GCCTTGAACCTGCGCATGTTTCT--ACTTTGGA 34 consensus_7954#1 TAGTGCCATGGGGTTTGTGTTTGTACTGTCCTTTTTTTGTGTGTGTGTCCTGAATCTTGA 425 * * * * ** * *** ** * * * ** consensus_7954#0 TTTCTGCAACAGTTATTACAGTAATTGTACGGTTGTGCCAAAGAT---CATTAGTGTTTG 1252 consensus_7954#2 TTTCTGCAACAGTTATTACAGTAATTGTACGGTTGTGCCAAAGAT---CATTAGTGTTTG 91 consensus_7954#1 TTTGTTTAA--GTTTGTGAAGTTACCTTACCTGTAAAGCAAGTATGGACATTA-TGCTTT 482 *** * ** *** * *** * *** * *** ** ***** ** ** consensus_7954#0 GAAAGAATTCACACTCTAACTGTATGCTTTTTACCATTTTGTGGAACGCCAATTCCATGT 1312 consensus_7954#2 GAAAGAATTCACACTCTAACTGTATGCTTTTTACCATTTTGTGGAACGCCAATTCCATGT 151 consensus_7954#1 AAATTGTTTTACAGAAGAACCTCANAAGAAACATGGTCCTGTCAAAC-----TTGNGAAG 537 ** ** *** *** * * * *** *** ** consensus_7954#0 AACTGAACTAATGTT-CAAATCAACTAGCTGTGAATGTTTTCATACTCGTTTTGGATATC 1371 consensus_7954#2 AACTGAACTAATGTT-CAAATCAACTAGCTGTGAATGTTTTCATAAAAAAAAAAAAAAAA 210 consensus_7954#1 GACCCTACTGTTGAGACAAGTTTTCTTCCTG-ACAGGTATTCTTTTAGTTTATGATTATC 596 ** *** ** *** * ** *** * ** *** * * consensus_7954#0 CGTTTGCGTGGGAGTATGGGAG 1393 consensus_7954#2 AAAAAAAAAAAAAAAAAA---- 228 consensus_7954#1 TTTCTGTGATG----------- 607 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||