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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_796#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1570 fasta sequence
[CTACGGCCACCACCAAGATGATCCAGATGCGTCCCGTTGGGCTAGGCATCGCTCGTACCAGACCGGGAGGCGACCGCCTTGACGGCATCGAGGACGGCATCGAGGACGACATCGACGAGGTGAAAGATCCAGGGGAGGATCAGGCCGTACACCAACCGATGCTGCCGGTTCTCGTCAGGGGCTCAGCGCCAGAGAAGAGTGATTTGGTTCGTTTGCTTGTTTTGTTTTGGGAAGATTTGGGATGGGTTTATTGAAAGTTTGTTTTCGTCTGGGTAGATTTTGAGATGGATTCATTGAAAGTTTGTCTTGGGTCGATTTAAGATGGATTTATTGAAAAAACCTAGCTTTTAGGTTGTGTTTAGTTCACACAAAAATTGGAAATTTTGTTGAAATTAGAACGATGTGACCGAAAAGTTGAAAGTTTATGTTTTTGGAAACTTCCAACTTTTCCATCACATCAAAACTTTTCTACACACAAATTTTTAACTTCTTCGTCACATCGTTCCAATTTTATCCAAACTTTTAATTTTAGTGTGAACTAAGCACAACCTAAACTCGGCCTTAACCGTGTGCTTCCAACTTGAAACAGGAAAAAAACTGGGATCGAGATCAAGTGGGTTATGGTGTGCATTTGTTGGGCTCCTTCATCTATCCTGCAGCCGTGGCAATCTCAATGAAGGATCACCCAGGAGATTTAACTGCGGTGCTCTTGATTTTTGGGACGATGTGGTGCATTTTGGCTATGGGTTTTCTTCTTCATTTGCATGCTAAGGAATCCAAGGCTCTTCAGCGCTTTACATCTATTATCCCTAGAGTCTTCCTTTCATGCTTCTCATATCTAGTCATGTACCACATTTCCTTCCTTATACCCAACAAGAAGGCAGCCCATATTTTCTGGTATGTGAAAGTGACAGTACTTCTGTCACTCTTCCATGCTGGAATTCTGATTTGGGTAAGGAGAAACACAAAACATTCATTCTGTGAAATTTTGCCATTAGATATGTTCTCTCTCTAGTTACACTGTTATAATAAAGTTTTTTTTTCATTTAGGTTGTAATCCACAAGATTTTGAAGAAACATTCGAATATCTCAATGCATCAGGACACTCCTATCAATGATTTCAAATATGTACCCAGAAATGATCTATTTGATATTGATGAATATGGGCACTACATCCCATCCAGACCAAGATCTGAATTGCAAACCACCTCATCTCGGTTCAGGGGCAAAAGGAGCCAATCAAAGAGTACATCAAGCAGAGAGAAGCAACGGAACTTGTGAAAGTTGAGTGGATACATCTGGCGCCTGTGAAGTCAAGGGGAGATTTGGATGCGTCAAGGGGACCGTTGCTTGCCAGCATCCGCGAGATAGGAGATCATTGCAACAGCCCTGCAAACGATGATTCGCTGTGATTATATTTCCTGGCTTGTCTTTTGCTGTGCCAGCAGCCCCTGAGAGACTGCGTGATCCATGCTTTGGTTGATAGCTGGAATCCCCAGCAGATGTTTTCTTTTGTTTCTCTAGACTATATATGAACTCTTATGCTTTCAAGAAAAAGCAGGGCGTAATG]
[+] EMBL AK106442 [CTACGGCCACCACCAAGATGATCCAGATGCGTCCCGTTGGGCTAGGCATCGCTCGTACCAGACCGGGAGGCGACCGCCTTGACGGCATCGAGGACGGCATCGAGGACGACATCGACGAGGTGAAAGATCCAGGGGAGGATCAGGCCGTACACCAACCGATGCTGCCGGTTCTCGTCAGGGGCTCAGCGCCAGAGAAGAGTGATTTGGTTCGTTTGCTTGTTTTGTTTTGGGAAGATTTGGGATGGGTTTATTGAAAGTTTGTTTTCGTCTGGGTAGATTTTGAGATGGATTCATTGAAAGTTTGTCTTGGGTCGATTTAAGATGGATTTATTGAAAAAACCTAGCTTTTAGGTTGTGTTTAGTTCACACAAAAATTGGAAATTTTGTTGAAATTAGAACGATGTGACCGAAAAGTTGAAAGTTTATGTTTTTGGAAACTTCCAACTTTTCCATCACATCAAAACTTTTCTACACACAAATTTTTAACTTCTTCGTCACATCGTTCCAATTTTATCCAAACTTTTAATTTTAGTGTGAACTAAGCACAACCTAAACTCGGCCTTAACCGTGTGCTTCCAACTTGAAACAGGAAAAAAACTGGGATCGAGATCAAGTGGGTTATGGTGTGCATTTGTTGGGCTCCTTCATCTATCCTGCAGCCGTGGCAATCTCAATGAAGGATCACCCAGGAGATTTAACTGCGGTGCTCTTGATTTTTGGGACGATGTGGTGCATTTTGGCTATGGGTTTTCTTCTTCATTTGCATGCTAAGGAATCCAAGGCTCTTCAGCGCTTTACATCTATTATCCCTAGAGTCTTCCTTTCATGCTTCTCATATCTAGTCATGTACCACATTTCCTTCCTTATACCCAACAAGAAGGCAGCCCATATTTTCTGGTATGTGAAAGTGACAGTACTTCTGTCACTCTTCCATGCTGGAATTCTGATTTGGGTAAGGAGAAACACAAAACATTCATTCTGTGAAATTTTGCCATTAGATATGTTCTCTCTCTAGTTACACTGTTATAATAAAGTTTTTTTTTCATTTAGGTTGTAATCCACAAGATTTTGAAGAAACATTCGAATATCTCAATGCATCAGGACACTCCTATCAATGATTTCAAATATGTACCCAGAAATGATCTATTTGATATTGATGAATATGGGCACTACATCCCATCCAGACCAAGATCTGAATTGCAAACCACCTCATCTCGGTTCAGGGGCAAAAGGAGCCAATCAAAGAGTACATCAAGCAGAGAGAAGCAACGGAACTTGTGAAAGTTGAGTGGATACATCTGGCGCCTGTGAAGTCAAGGGGAGATTTGGATGCGTCAAGGGGACCGTTGCTTGCCAGCATCCGCGAGATAGGAGATCATTGCAACAGCCCTGCAAACGATGATTCGCTGTGATTATATTTCCTGGCTTGTCTTTTGCTGTGCCAGCAGCCCCTGAGAGACTGCGTGATCCATGCTTTGGTTGATAGCTGGAATCCCCAGCAGATGTTTTCTTTTGTTTCTCTAGACTATATATGAACTCTTATGCTTTCAAGAAAAAGCAGGGCGTAATG]
consensusID : consensus_796#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 428 fasta sequence
[GCGATGGGTTTAGGGTTTTAGCAGGCGGAGGTAGAGCGCCAGAGAAGAGTGATTTGGAAAAAAACTGGGATCGAGATCAAGTGGGTTATGGTGTGCATTTGTTGGGCTCCTTCATCTATCCTGCAGCCGTGGCAATCTCAATGAAGGATCACCCAGGAGATTTAACTGCGGTGCTCTTGATTTTTGGGACGATGTGGTGCATTTTGGCTATGGGTTTTCTTCTTCATTTGCATGCTAAGGAATCCAAGGCTCTTCAGCGCTTTACATCTATTATCCCTAGAGTCTTCCTTTCATGCTTCTCATATCTAGTCATGTACCACATTTCCTTCCTTATACCCAACAAGAAGGCAGCCCANATTTTCTGGTATGTGAAAGTGACAGTACTTCTGTCACTCTTCCATGCTGGAATTCTGATTTGGGGTGTAATC]
[+] EMBL C27067 [GCGATGGGTTTAGGGTTTTAGCAGGCGGAGGTAGAGCGCCAGAGAAGAGTGATTTGGAAAAAAACTGGGATCGAGATCAAGTGGGTTATGGTGTGCATTTGTTGGGCTCCTTCATCTATCCTGCAGCCGTGGCAATCTCAATGAAGGATCACCCAGGAGATTTAACTGCGGTGCTCTTGATTTTTGGGACGATGTGGTGCATTTTGGCTATGGGTTTTCTTCTTCATTTGCATGCTAAGGAATCCAAGGCTCTTCAGCGCTTTACATCTATTATCCCTAGAGTCTTCCTTTCATGCTTCTCATATCTAGTCATGTACCACATTTCCTTCCTTATACCCAACAAGAAGGCAGCCCANATTTTCTGGTATGTGAAAGTGACAGTACTTCTGTCACTCTTCCATGCTGGAATTCTGATTTGGGGTGTAATC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_796#0 CTACGGCCACCACCAAGATGATCCAGATGCGTCCCGTTGGGCTAGGCATCGCTCGTACCA 60
consensus_796#1 ------------------------------------------------------------
consensus_796#0 GACCGGGAGGCGACCGCCTTGACGGCATCGAGGACGGCATCGAGGACGACATCGACGAGG 120
consensus_796#1 ------------------------------------------------------------
consensus_796#0 TGAAAGATCCAGGGGAGGATCAGGCCGTACACCAACCGATGCTGCCGGTTCTCGTCAGGG 180
consensus_796#1 ------------------------------------------------------------
consensus_796#0 GCTCAGCGCCAGAGAAGAGTGATTTGGTTCGTTTGCTTGTTTTGTTTTGGGAAGATTTGG 240
consensus_796#1 ------------------------------------------------------------
consensus_796#0 GATGGGTTTATTGAAAGTTTGTTTTCGTCTGGGTAGATTTTGAGATGGATTCATTGAAAG 300
consensus_796#1 ------------------------------------------------------------
consensus_796#0 TTTGTCTTGGGTCGATTTAAGATGGATTTATTGAAAAAACCTAGCTTTTAGGTTGTGTTT 360
consensus_796#1 ------------------------------------------------------------
consensus_796#0 AGTTCACACAAAAATTGGAAATTTTGTTGAAATTAGAACGATGTGACCGAAAAGTTGAAA 420
consensus_796#1 ------------------------------------------------------------
consensus_796#0 GTTTATGTTTTTGGAAACTTCCAACTTTTCCATCACATCAAAACTTTTCTACACACAAAT 480
consensus_796#1 ------------------------------------------------------------
consensus_796#0 TTTTAACTTCTTCGTCACATCGTTCCAATTTTATCCAAACTTTTAATTTTAGTGTGAACT 540
consensus_796#1 --------------------------------------GCGATGGGTTTAGGGTTTTAGC 22
* * *** * * *
consensus_796#0 AAGCACAACCTAAACTCGGCCTTAACCGTGTGCTTCCAACTTGAAACAGGAAAAAAACTG 600
consensus_796#1 AGGCGGAGGTAGAGC---GCCAGAGAAGAGTGATTT------------GGAAAAAAACTG 67
* ** * * * *** * * *** ** ************
consensus_796#0 GGATCGAGATCAAGTGGGTTATGGTGTGCATTTGTTGGGCTCCTTCATCTATCCTGCAGC 660
consensus_796#1 GGATCGAGATCAAGTGGGTTATGGTGTGCATTTGTTGGGCTCCTTCATCTATCCTGCAGC 127
************************************************************
consensus_796#0 CGTGGCAATCTCAATGAAGGATCACCCAGGAGATTTAACTGCGGTGCTCTTGATTTTTGG 720
consensus_796#1 CGTGGCAATCTCAATGAAGGATCACCCAGGAGATTTAACTGCGGTGCTCTTGATTTTTGG 187
************************************************************
consensus_796#0 GACGATGTGGTGCATTTTGGCTATGGGTTTTCTTCTTCATTTGCATGCTAAGGAATCCAA 780
consensus_796#1 GACGATGTGGTGCATTTTGGCTATGGGTTTTCTTCTTCATTTGCATGCTAAGGAATCCAA 247
************************************************************
consensus_796#0 GGCTCTTCAGCGCTTTACATCTATTATCCCTAGAGTCTTCCTTTCATGCTTCTCATATCT 840
consensus_796#1 GGCTCTTCAGCGCTTTACATCTATTATCCCTAGAGTCTTCCTTTCATGCTTCTCATATCT 307
************************************************************
consensus_796#0 AGTCATGTACCACATTTCCTTCCTTATACCCAACAAGAAGGCAGCCCATATTTTCTGGTA 900
consensus_796#1 AGTCATGTACCACATTTCCTTCCTTATACCCAACAAGAAGGCAGCCCANATTTTCTGGTA 367
************************************************ ***********
consensus_796#0 TGTGAAAGTGACAGTACTTCTGTCACTCTTCCATGCTGGAATTCTGATTTGGGTAAGGAG 960
consensus_796#1 TGTGAAAGTGACAGTACTTCTGTCACTCTTCCATGCTGGAATTCTGATTTGGGGTGTAAT 427
***************************************************** *
consensus_796#0 AAACACAAAACATTCATTCTGTGAAATTTTGCCATTAGATATGTTCTCTCTCTAGTTACA 1020
consensus_796#1 C----------------------------------------------------------- 428
consensus_796#0 CTGTTATAATAAAGTTTTTTTTTCATTTAGGTTGTAATCCACAAGATTTTGAAGAAACAT 1080
consensus_796#1 ------------------------------------------------------------
consensus_796#0 TCGAATATCTCAATGCATCAGGACACTCCTATCAATGATTTCAAATATGTACCCAGAAAT 1140
consensus_796#1 ------------------------------------------------------------
consensus_796#0 GATCTATTTGATATTGATGAATATGGGCACTACATCCCATCCAGACCAAGATCTGAATTG 1200
consensus_796#1 ------------------------------------------------------------
consensus_796#0 CAAACCACCTCATCTCGGTTCAGGGGCAAAAGGAGCCAATCAAAGAGTACATCAAGCAGA 1260
consensus_796#1 ------------------------------------------------------------
consensus_796#0 GAGAAGCAACGGAACTTGTGAAAGTTGAGTGGATACATCTGGCGCCTGTGAAGTCAAGGG 1320
consensus_796#1 ------------------------------------------------------------
consensus_796#0 GAGATTTGGATGCGTCAAGGGGACCGTTGCTTGCCAGCATCCGCGAGATAGGAGATCATT 1380
consensus_796#1 ------------------------------------------------------------
consensus_796#0 GCAACAGCCCTGCAAACGATGATTCGCTGTGATTATATTTCCTGGCTTGTCTTTTGCTGT 1440
consensus_796#1 ------------------------------------------------------------
consensus_796#0 GCCAGCAGCCCCTGAGAGACTGCGTGATCCATGCTTTGGTTGATAGCTGGAATCCCCAGC 1500
consensus_796#1 ------------------------------------------------------------
consensus_796#0 AGATGTTTTCTTTTGTTTCTCTAGACTATATATGAACTCTTATGCTTTCAAGAAAAAGCA 1560
consensus_796#1 ------------------------------------------------------------
consensus_796#0 GGGCGTAATG 1570
consensus_796#1 ----------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||