These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7962#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 441 fasta sequence [TGAAAAAGAATGCACTGCTGTGTTAGACTTCCTT-T-TCTTTTGTAGATCACAAACATCACCATTTTATAGTGTTTGTTTGGTCAAACACAAGTGCAGAACTGCAAGTTCAATGCCGCGCACATCCCATTTACAGTGTCCAGCTTGCTAATTTTTCATGGTGCAAAAAGTCTTATTAATACCTGAGTAAAATTCGATAACTTGCCGCAATCTGCAGTTTTTTTTCTACCAAATACAAATGCTAGGACGGTAGGCAAGCCTACAAGGTAATGTTATTATTTTGCTGTATTATGTGGTGTTGGTTTATATCCCATAAATATGGGAAAACACATTCTTTGTTGTACACTCAACGCTTACAAGTTGATGAGAAGGGCATGGATTGATAGACTGGCAAGCCACGCCACAGAAACACCCTGCAGATCTTGCAAGGTTACATTAGTTCTG] [-] EMBL AU063429 [TGAAAAAGAATGCACTGCTGTGTTAGACTTCCTT T TCTTTTGTAGATCACAAACATCACCATTTTATAGTGTTTGTTTGGTCAAACACAAGTGCAGAACTGCAAGTTCAATGCCGCGCACATCCCATTTACAGTGTCCAGCTTGCTAATTTTTCATGGTGCAAAAAGTCTTATTAATACCTGAGTAAAATTCGATAACTTGCCGCAATCTGCAGTTTTTTTTCTACCAAATACAAATGCTAGGACGGTAGGCAAGCCTACAAGGTAATGTTATT ] [+] EMBL CB660060 [ AAAAAGAATGCACTGCTGTGTTAGACTTCCTTCTCTCTTTTGTAGATCACAAACATCACCATTTTATAGTGTTTGTTTGGTCAAACACAAGTGCAGAACTGCAAGTTCAATGCCGCGCACATCCCATTTACAGTGTCCAGCTTGCTAATTTTTCATGGTGCAAAAAGTCTTATTAATACCTGAGTAAAATTCGATAACTTGCCGCAATCTGCAGTTTTTTTTCTACCAAATACAAATGCTAGGACGGTAGGCAAGCCTACAAGGTAATGTTATTATTTTGCTGTATTATGTGGTGTTGGTTTATATCCCATAAATATGGGAAAACACATTCTTTGTTGTACACTCAACGCTTACAAGTTGATGAGAAGGGCATGGATTGATAGACTGGCAAGCCACGCCACAGAAACACCCTGCAGATCTTGCAAGGTTACATTAGTTCTG] [-] EMBL AU063586 [ AAAAAGAATGCACTGCTGTGTTAGACTTCCTT T TCTTTTGTAGATNACAAACATCACCATTTTATAGTGTTTGTTTGGTCAAANACAAGTGCAGAACTGCAAGTTCAATGCCGCGCACATCCCATTTACAGTGTCCAGCTTGCTAATTTTTCATGGTGCAAAAAGTCTTATTAATACCTGAGTTAAANTCGATAACTTGCCGCAATCTGCAGTTTTTTTTCTACCAAATACAAATGCTAGGACGGTAGGCAAGCCTACAAGGTAATGTTATT ] consensusID : consensus_7962#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 344 fasta sequence [ATTAATACCTGAGTAAAATTCGATAACTCTGCCGCAATCTGCAGTTTTTTTCTACAAAATACAAATGCTAGGACGGTAGGCAAGCCTACAAGGGAATGTTATTATTTTGCTGTATTATGTGGTGTTGGTTTATATCCCATAAATATGGGAAAACACATTCTTTGTTGTACACACAACGCTTACAAGTTGATGAAAAGGGCATGGATTGATAAACTGGCAAGCCACGCCACAAAAACACCCTGATGGCTCCAAAGAGTTAGCTTAAAGAAGCAGGAAAATAAAGGTCAAGTTGTATATGGGGAACTAAACGTACCTGCAGATCTTGCAAGGCTACATTAGTTCTG] [+] EMBL CB619216 [ATTAATACCTGAGTAAAATTCGATAACTCTGCCGCAATCTGCAGTTTTTTTCTACAAAATACAAATGCTAGGACGGTAGGCAAGCCTACAAGGGAATGTTATTATTTTGCTGTATTATGTGGTGTTGGTTTATATCCCATAAATATGGGAAAACACATTCTTTGTTGTACACACAACGCTTACAAGTTGATGAAAAGGGCATGGATTGATAAACTGGCAAGCCACGCCACAAAAACACCCTGATGGCTCCAAAGAGTTAGCTTAAAGAAGCAGGAAAATAAAGGTCAAGTTGTATATGGGGAACTAAACGTACCTGCAGATCTTGCAAGGCTACATTAGTTCTG] consensusID : consensus_7962#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 172 fasta sequence [TTTTTTAAATTGTTATTATTTTGCTTGTATTATGTGGTGTTGGTTTATATCCCATAAATATGGGAAAAACATTCTTTGTTTGTACACTCAAGCTTACAAGTTGATGAAAGGGATGGATTGATATGACTTGGCAATGCCACTGCCACAGAAAACACCCTGATGGCTCCAAAGA] [-] EMBL BI813497 [TTTTTTAAATTGTTATTATTTTGCTTGTATTATGTGGTGTTGGTTTATATCCCATAAATATGGGAAAAACATTCTTTGTTTGTACACTCAAGCTTACAAGTTGATGAAAGGGATGGATTGATATGACTTGGCAATGCCACTGCCACAGAAAACACCCTGATGGCTCCAAAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7962#1 ------------------------------------------------------------ consensus_7962#2 ------------------------------------------------------------ consensus_7962#0 TGAAAAAGAATGCACTGCTGTGTTAGACTTCCTTTTCTTTTGTAGATCACAAACATCACC 60 consensus_7962#1 ------------------------------------------------------------ consensus_7962#2 ------------------------------------------------------------ consensus_7962#0 ATTTTATAGTGTTTGTTTGGTCAAACACAAGTGCAGAACTGCAAGTTCAATGCCGCGCAC 120 consensus_7962#1 ---------------------------------------------------ATTAATACC 9 consensus_7962#2 ------------------------------------------------------------ consensus_7962#0 ATCCCATTTACAGTGTCCAGCTTGCTAATTTTTCATGGTGCAAAAAGTCTTATTAATACC 180 consensus_7962#1 TGAGTAAAATTCGATAACTCTGCCGCAATCTGCAGTTTTTTT-CTACAAAATACAAATGC 68 consensus_7962#2 ------------------------------------------------------------ consensus_7962#0 TGAGTAAAATTCGATAACT-TGCCGCAATCTGCAGTTTTTTTTCTACCAAATACAAATGC 239 consensus_7962#1 TAGGACGGTAGGCAAGCCTACAAGGGAATGTTATTATTTTGCT-GTATTATGTGGTGTTG 127 consensus_7962#2 ------------------TTTTTTAAATTGTTATTATTTTGCTTGTATTATGTGGTGTTG 42 consensus_7962#0 TAGGACGGTAGGCAAGCCTACAAGGTAATGTTATTATTTTGCT-GTATTATGTGGTGTTG 298 * * *************** **************** consensus_7962#1 GTTTATATCCCATAAATATGGGAAAACACATTCTTTGTT-GTACACACAACGCTTACAAG 186 consensus_7962#2 GTTTATATCCCATAAATATGGGAAAA-ACATTCTTTGTTTGTACACTCAA-GCTTACAAG 100 consensus_7962#0 GTTTATATCCCATAAATATGGGAAAACACATTCTTTGTT-GTACACTCAACGCTTACAAG 357 ************************** ************ ****** *** ********* consensus_7962#1 TTGATGAAAAGGGCATGGATTGATA--AACTGGCAA-GCCAC-GCCACA-AAAACACCCT 241 consensus_7962#2 TTGATGAAAGGG--ATGGATTGATATGACTTGGCAATGCCACTGCCACAGAAAACACCCT 158 consensus_7962#0 TTGATGAGAAGGGCATGGATTGATA--GACTGGCAA-GCCAC-GCCACA-GAAACACCCT 412 ******* * ** *********** ****** ***** ****** ********* consensus_7962#1 GATGGCTCCAAAGAGTTAGCTTAAAGAAGCAGGAAAATAAAGGTCAAGTTGTATATGGGG 301 consensus_7962#2 GATGGCTCCAAAGA---------------------------------------------- 172 consensus_7962#0 GCAGATCTTGCAAGGTTACATTAGTTCTG------------------------------- 441 * * * consensus_7962#1 AACTAAACGTACCTGCAGATCTTGCAAGGCTACATTAGTTCTG 344 consensus_7962#2 ------------------------------------------- consensus_7962#0 ------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||