These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7963#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1992 fasta sequence [TGTGCGCTCCCATCTGAACTGAAGCCTCTTGCCATCTCCCCCAGCCGAGTGAGTGATCTCTCCTCTCCATCTCTTAGCCGCCAAAGCAGAAGTCGTCGTTGTGAGGCTTACAGCTAGCTGCATGCGCTCGCGTGTGTAGAAGATAGCAGCCACCACCATCACCAGACACCAGCAAAAACAAGAGAAAAATTCCACCGGCGAAACACGGAACAAAACCGAGACGCGCGTTAGAGTCTACCAAGCTTATCTCCCCAACCCCACCCCGCCGCGCAGCCCAGCCTCTCGTTCGTTTCCACAGCTTCTCCCGTCAAACCGCGCACATCCGCCTATATATCGCGCGCGCGTGTGATCTCCCGGTTTTTGTTTGGTTTTGCTCCCCGTTCTCCCGTTGCCGTCCCACGAGGTAAAAACTAAACCAAATACATATATAAAAAAAACGCGGTGCTGCGACGAGGACAACGTAGCGGCTAGCGCCATCACTCGTGGTGTTACTGCTTTACCACTGTACTGTGTACTGTGGTGTGTGTGTGGGGGGTTGTGACTTGTGTGACGCTACCTGCGACAAGAGGACCAAGGGAGACATGGCAGTGACAGTGTTCGAGACCGCCGAGCAGCGACTGCCGTGCCACGCCGCCGCTGCCGAGCTGGGCGCCGACGGCGGGAAGAAGGTGGCGGTGGATGATGATGCGAGCGGCGGCGGGCCCGGGCAGGCCGTGCTGCTGCTGCAGGAGACCGATCACGGCGGCGACGACGACGACCGGCCGGAGAGGGACGACGTGTGGAACATGATCCAGTCGCAGAGGCCGCCGGTGGCGGCGGGGAAGCAGCAGCAGGCGGCGGCGCCGTACGTGCACCCGCTCGTGCGGAGGTCGTCGAGCC-TG-CTCAGCCAGAAGAGCCTGG-AGATTTGCACC-GAGAGCC-TCGGC-TCC-GAGACCGG---CTCCGA-CGG--CTTCTCCGACG-CCGATGGGT--CC-ACCGA-CCGCTCGTGCCCCGCGTCGGACGATGACTCCGACGGGGGCGCGGAGGAGGTGGCCGCGCGCGCCAGCCCGCCACGCGCGTTCCCGCCGCCGCTGCCGTCGCTGGCGCGGCGCACGGTGGGGGCGGTGCAGATGACGCAGGACCGCCGCGACGGCCGCCTCGTCGTCAAGGCCGTCCCCGTGCCGTCC-GCCACGCT-GTTCCGCGCGCAGCGCTGCGGCGGGCGCCTGCTCCTCTCCTTCGCCGACACCGCCGCTCCCTCCTCGGACGAGGACGACGAGAACAATGACCAAGAAGAACCCGAGCAGCAGGCCGACGAGGTCGCGCACGACGAGGAGGAGGAGGAGGACGACGAGGATGACGAGGAGGAGGTCGAGGTCGTGGACAGGGGCACCATCGTCGAGGTCAAGGTCAGCACGCAGCCGCAGGCGCGCAGCAACGGCGGCGGCAGTGTTGGGCCGCGGGTGCACCGCTCCTCGCTCGTCATCAACAAGTTCGTCAACGCCGAGCCGGCCATCGCCGCCTCCGACATCAGCGACACCGCCGCCACCGCACCCAATCCCCCGAGACGCCCGACCGGGTCCACCACCACGGCGGCCGCAGCTCTCGTCGCAGCCTCATCTCTGAGCGCGACCTCGGCTCCGTCGGGCAGTGACAACCCCGGCGGCGAGAGCAAGCTGCTGATGACGACCTGCCGGCGCCGGCGGAGCAAGGAGGAGCTCATGAACCACATGCGCCGATGCGGGCAGCTCAGCGGCAAGCTCTTCATATGGGAGCCACGCATCGCCACCTCCTCCTGAGCCGACGAGCCTCGCCGCCGCCTCCTCTGCTCGCTTGTGCCACGAGTGCTCTGCTCTGCTCTGTTTGTTCGTAGCCGTTGTAACGTAAACGTGCGTAATATTTGTGTTAGTAGCAAGGTGATCGCCACGTGATTGGCTTAGCCCTCTTGTCTGTGTCTCCTTCCGTGAGTGAGAGGGAGGGAGCTAGATTTGCTTTCGTTTATCTCCATCCGTCCCCGTGTCTCGT] [+] EMBL AK121181 [TGTGCGCTCCCATCTGAACTGAAGCCTCTTGCCATCTCCCCCAGCCGAGTGAGTGATCTCTCCTCTCCATCTCTTAGCCGCCAAAGCAGAAGTCGTCGTTGTGAGGCTTACAGCTAGCTGCATGCGCTCGCGTGTGTAGAAGATAGCAGCCACCACCATCACCAGACACCAGCAAAAACAAGAGAAAAATTCCACCGGCGAAACACGGAACAAAACCGAGACGCGCGTTAGAGTCTACCAAGCTTATCTCCCCAACCCCACCCCGCCGCGCAGCCCAGCCTCTCGTTCGTTTCCACAGCTTCTCCCGTCAAACCGCGCACATCCGCCTATATATCGCGCGCGCGTGTGATCTCCCGGTTTTTGTTTGGTTTTGCTCCCCGTTCTCCCGTTGCCGTCCCACGAGGTAAAAACTAAACCAAATACATATATAAAAAAAACGCGGTGCTGCGACGAGGACAACGTAGCGGCTAGCGCCATCACTCGTGGTGTTACTGCTTTACCACTGTACTGTGTACTGTGGTGTGTGTGTGGGGGGTTGTGACTTGTGTGACGCTACCTGCGACAAGAGGACCAAGGGAGACATGGCAGTGACAGTGTTCGAGACCGCCGAGCAGCGACTGCCGTGCCACGCCGCCGCTGCCGAGCTGGGCGCCGACGGCGGGAAGAAGGTGGCGGTGGATGATGATGCGAGCGGCGGCGGGCCCGGGCAGGCCGTGCTGCTGCTGCAGGAGACCGATCACGGCGGCGACGACGACGACCGGCCGGAGAGGGACGACGTGTGGAACATGATCCAGTCGCAGAGGCCGCCGGTGGCGGCGGGGAAGCAGCAGCAGGCGGCGGCGCCGTACGTGCACCCGCTCGTGCGGAGGTCGTCGAGCC TG CTCAGCCAGAAGAGCCTGG AGATTTGCACC GAGAGCC TCGGC TCC GAGACCGG CTCCGA CGG CTTCTCCGACG CCGATGGGT CC ACCGA CCGCTCGTGCCCCGCGTCGGACGATGACTCCGACGGGGGCGCGGAGGAGGTGGCCGCGCGCGCCAGCCCGCCACGCGCGTTCCCGCCGCCGCTGCCGTCGCTGGCGCGGCGCACGGTGGGGGCGGTGCAGATGACGCAGGACCGCCGCGACGGCCGCCTCGTCGTCAAGGCCGTCCCCGTGCCGTCC GCCACGCT GTTCCGCGCGCAGCGCTGCGGCGGGCGCCTGCTCCTCTCCTTCGCCGACACCGCCGCTCCCTCCTCGGACGAGGACGACGAGAACAATGACCAAGAAGAACCCGAGCAGCAGGCCGACGAGGTCGCGCACGACGAGGAGGAGGAGGAGGACGACGAGGATGACGAGGAGGAGGTCGAGGTCGTGGACAGGGGCACCATCGTCGAGGTCAAGGTCAGCACGCAGCCGCAGGCGCGCAGCAACGGCGGCGGCAGTGTTGGGCCGCGGGTGCACCGCTCCTCGCTCGTCATCAACAAGTTCGTCAACGCCGAGCCGGCCATCGCCGCCTCCGACATCAGCGACACCGCCGCCACCGCACCCAATCCCCCGAGACGCCCGACCGGGTCCACCACCACGGCGGCCGCAGCTCTCGTCGCAGCCTCATCTCTGAGCGCGACCTCGGCTCCGTCGGGCAGTGACAACCCCGGCGGCGAGAGCAAGCTGCTGATGACGACCTGCCGGCGCCGGCGGAGCAAGGAGGAGCTCATGAACCACATGCGCCGATGCGGGCAGCTCAGCGGCAAGCTCTTCATATGGGAGCCACGCATCGCCACCTCCTCCTGAGCCGACGAGCCTCGCCGCCGCCTCCTCTGCTCGCTTGTGCCACGAGTGCTCTGCTCTGCTCTGTTTGTTCGTAGCCGTTGTAACGTAAACGTGCGTAATATTTGTGTTAGTAGCAAGGTGATCGCCACGTGATT ] [+] EMBL AK060717 [ CGAGCGGCGGCGGGCCCGGGCAGGCCGTGCTGCTGCTGCAGGAGACCGATCACGGCGGCGACGACGACGACCGGCCGGAGAGGGACGACGTGTGGAACATGATCCAGTCGCAGAGGCCGCCGGTGGCGGCGGGGAAGCAGCAGCAGGCGGCGGCGCCGTACGTGCACCCGCTCGTGCGGAGGTCGTCGAGCC TG CTCAGCCAGAAGAGCCTGG AGATTTGCACC GAGAGCC TCGGC TCC GAGACCGG CTCCGA CGG CTTCTCCGACG CCGATGGGT CC ACCGA CCGCTCGTGCCCCGCGTCGGACGATGACTCCGACGGGGGCGCGGAGGAGGTGGCCGCGCGCGCCAGCCCGCCACGCGCGTTCCCGCCGCCGCTGCCGTCGCTGGCGCGGCGCACGGTGGGGGCGGTGCAGATGACGCAGGACCGCCGCGACGGCCGCCTCGTCGTCAAGGCCGTCCCCGTGCCGTCC GCCACGCT GTTCCGCGCGCAGCGCTGCGGCGGGCGCCTGCTCCTCTCCTTCGCCGACACCGCCGCTCCCTCCTCGGACGAGGACGACGAGAACAATGACCAAGAAGAACCCGAGCAGCAGGCCGACGAGGTCGCGCACGACGAGGAGGAGGAGGAGGACGACGAGGATGACGAGGAGGAGGTCGAGGTCGTGGACAGGGGCACCATCGTCGAGGTCAAGGTCAGCACGCAGCCGCAGGCGCGCAGCAACGGCGGCGGCAGTGTTGGGCCGCGGGTGCACCGCTCCTCGCTCGTCATCAACAAGTTCGTCAACGCCGAGCCGGCCATCGCCGCCTCCGACATCAGCGACACCGCCGCCACCGCACCCAATCCCCCGAGACGCCCGACCGGGTCCACCACCACGGCGGCCGCAGCTCTCGTCGCAGCCTCATCTCTGAGCGCGACCTCGGCTCCGTCGGGCAGTGACAACCCCGGCGGCGAGAGCAAGCTGCTGATGACGACCTGCCGGCGCCGGCGGAGCAAGGAGGAGCTCATGAACCACATGCGCCGATGCGGGCAGCTCAGCGGCAAGCTCTTCATATGGGAGCCACGCATCGCCACCTCCTCCTGAGCCGACGAGCCTCGCCGCCGCCTCCTCTGCTCGCTTGTGCCACGAGTGCTCTGCTCTGCTCTGTTTGTTCGTAGCCGTTGTAACGTAAACGTGCGTAATATTTGTGTTAGTAGCAAGGTGATCGCCACGTGATTGGCTTAGCCCTCTTGTCTGTGTCTCCTTCCGTGAGTGAGAGGGAGGGAGCTAGATTTGCTTTCGTTTATCTCCATCCGTCCCCGTGTCTCGT] [+] EMBL BI806532 [ tTCGAACCTTGTTTCAACCA AANACCTTGGAAAATTTGCACCGGAGAACCTTCGGCTTCCNGAGACCGGGGTTTCCGACCGGNTTTTTTCCGACGCCCGATGGGTTCCCAACCGACCCGCTCGTGCCCCGCGTCGGACGATGACTCCGACGGGGGCGCGGAGGA GT GCCGCGCGCGCCAGCCCGCCACGCGCGTTCCCGCCGCCGCTGCCGTCGCTGGCGCGGCGCACGGTGGGGGCGGTGCAGATGACGCAGGACCGCCGCGACGGCCGCCTCGTCGTCAAGGCCGTCCCCGTGCCGTCC GCCACGCT GTTCCGCGCGCAGCGCTGCGGCGGGCGCCTGCTCCTCTCCTTCGCCGACACCGCCGCTCCCTCCTCGGACGAGGACGACGAGAACAATGACCAAGAAGAACCCGAGCAGCAGGCCGACGAGGTCGCGCACGACGAGGAGGAGGAGGAGGACGACGAGGATGACGAGGAGGAGGTCGAGGTCGTGGACAGGGGCACCATCGTCGAGGTCAAGGTCAGCACGCAGCCGCAGGCGCGCAGCAACGGCGGCGGCAGTGTTGGGCCGCGGGTGCACCGCTCCTCGCTCGTCATCAACAAGTTCGTCAACGCCGAGCCGGCCATCGCCGCCTCCGACATCAGCGACACCGCCGCCACCGCACCCAATCCCCCGAGACGCCCGACCGGGT ] [+] EMBL BI809726 [ GGCCGTGCAGATGACGCA GACCGCCGCGAC GCCGCCTCGTCGTCAA GCCGTCCCCGTGCCGTCCGGCCACGCTGGTTCCGCGCGCAGCGCTTC GCGGGCGCCTGCTCCTCTCCTTCGCCGACACCGCCGCTCCCTCCTCGGACGAGGACGACGAGAAC ATTACCAAGAAGAACCCGAGCAGCAGGCCGACGAGGTCGCGCACGAGGAGGAGGAGGACGACGACGACGAGGATGACGAGGAGGAGGTCGAGGTCGTGGACAGGGGCACCATCGTCGAGGTCAAGGTCAGCACGCAGCCGCAGGCGCGCAGCAACGGCGGCGGCAGTGTTGGGCCGCGGGTGCACCGCTCCTCGCTCGTCATCAACAAGTTCGTCAACGCCGAGCCGGCCATCGCCGCCTCCGACATCAGCGACACCGCCGCCACCGCACCCAATCCCCCGAGACGCCCGACCGGGT ] consensusID : consensus_7963#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 331 fasta sequence [TCTCGTCGCAGCCTCATCTCTGAGCGCGACCTCGGCTCCGTCGGGCAGTGACAACCCCGGCGGCGAGAGCAAGCTGCTGATGACGACCTGCCGGCGCCGGCGGANAAGGAGGAGCTCATGAACCACATGCGCCGATGCGGGCAGCTCAGCGGCAAGCTCTTCATATGGGAGCCACGCATCGCCACCNCCTCCTGAGCCGACGAGCCTCGCCGCCGCCTCCNCNGCTCGCTTGTNCCACGAGTGCTCTGCTCTGCTCTGTTTGTTCGTAGCCGTTGTAACGTAAACGTGCGTAATATTTGTGTTAGTAGCAAAAAAAAAAAAAAAAAAAATA] [+] EMBL AU076094 [TCTCGTCGCAGCCTCATCTCTGAGCGCGACCTCGGCTCCGTCGGGCAGTGACAACCCCGGCGGCGAGAGCAAGCTGCTGATGACGACCTGCCGGCGCCGGCGGANAAGGAGGAGCTCATGAACCACATGCGCCGATGCGGGCAGCTCAGCGGCAAGCTCTTCATATGGGAGCCACGCATCGCCACCNCCTCCTGAGCCGACGAGCCTCGCCGCCGCCTCCNCNGCTCGCTTGTNCCACGAGTGCTCTGCTCTGCTCTGTTTGTTCGTAGCCGTTGTAACGTAAACGTGCGTAATATTTGTGTTAGTAGCAAAAAAAAAAAAAAAAAAAATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7963#0 TGTGCGCTCCCATCTGAACTGAAGCCTCTTGCCATCTCCCCCAGCCGAGTGAGTGATCTC 60 consensus_7963#1 ------------------------------------------------------------ consensus_7963#0 TCCTCTCCATCTCTTAGCCGCCAAAGCAGAAGTCGTCGTTGTGAGGCTTACAGCTAGCTG 120 consensus_7963#1 ------------------------------------------------------------ consensus_7963#0 CATGCGCTCGCGTGTGTAGAAGATAGCAGCCACCACCATCACCAGACACCAGCAAAAACA 180 consensus_7963#1 ------------------------------------------------------------ consensus_7963#0 AGAGAAAAATTCCACCGGCGAAACACGGAACAAAACCGAGACGCGCGTTAGAGTCTACCA 240 consensus_7963#1 ------------------------------------------------------------ consensus_7963#0 AGCTTATCTCCCCAACCCCACCCCGCCGCGCAGCCCAGCCTCTCGTTCGTTTCCACAGCT 300 consensus_7963#1 ------------------------------------------------------------ consensus_7963#0 TCTCCCGTCAAACCGCGCACATCCGCCTATATATCGCGCGCGCGTGTGATCTCCCGGTTT 360 consensus_7963#1 ------------------------------------------------------------ consensus_7963#0 TTGTTTGGTTTTGCTCCCCGTTCTCCCGTTGCCGTCCCACGAGGTAAAAACTAAACCAAA 420 consensus_7963#1 ------------------------------------------------------------ consensus_7963#0 TACATATATAAAAAAAACGCGGTGCTGCGACGAGGACAACGTAGCGGCTAGCGCCATCAC 480 consensus_7963#1 ------------------------------------------------------------ consensus_7963#0 TCGTGGTGTTACTGCTTTACCACTGTACTGTGTACTGTGGTGTGTGTGTGGGGGGTTGTG 540 consensus_7963#1 ------------------------------------------------------------ consensus_7963#0 ACTTGTGTGACGCTACCTGCGACAAGAGGACCAAGGGAGACATGGCAGTGACAGTGTTCG 600 consensus_7963#1 ------------------------------------------------------------ consensus_7963#0 AGACCGCCGAGCAGCGACTGCCGTGCCACGCCGCCGCTGCCGAGCTGGGCGCCGACGGCG 660 consensus_7963#1 ------------------------------------------------------------ consensus_7963#0 GGAAGAAGGTGGCGGTGGATGATGATGCGAGCGGCGGCGGGCCCGGGCAGGCCGTGCTGC 720 consensus_7963#1 ------------------------------------------------------------ consensus_7963#0 TGCTGCAGGAGACCGATCACGGCGGCGACGACGACGACCGGCCGGAGAGGGACGACGTGT 780 consensus_7963#1 ------------------------------------------------------------ consensus_7963#0 GGAACATGATCCAGTCGCAGAGGCCGCCGGTGGCGGCGGGGAAGCAGCAGCAGGCGGCGG 840 consensus_7963#1 ------------------------------------------------------------ consensus_7963#0 CGCCGTACGTGCACCCGCTCGTGCGGAGGTCGTCGAGCCTGCTCAGCCAGAAGAGCCTGG 900 consensus_7963#1 ------------------------------------------------------------ consensus_7963#0 AGATTTGCACCGAGAGCCTCGGCTCCGAGACCGGCTCCGACGGCTTCTCCGACGCCGATG 960 consensus_7963#1 ------------------------------------------------------------ consensus_7963#0 GGTCCACCGACCGCTCGTGCCCCGCGTCGGACGATGACTCCGACGGGGGCGCGGAGGAGG 1020 consensus_7963#1 ------------------------------------------------------------ consensus_7963#0 TGGCCGCGCGCGCCAGCCCGCCACGCGCGTTCCCGCCGCCGCTGCCGTCGCTGGCGCGGC 1080 consensus_7963#1 ------------------------------------------------------------ consensus_7963#0 GCACGGTGGGGGCGGTGCAGATGACGCAGGACCGCCGCGACGGCCGCCTCGTCGTCAAGG 1140 consensus_7963#1 ------------------------------------------------------------ consensus_7963#0 CCGTCCCCGTGCCGTCCGCCACGCTGTTCCGCGCGCAGCGCTGCGGCGGGCGCCTGCTCC 1200 consensus_7963#1 ------------------------------------------------------------ consensus_7963#0 TCTCCTTCGCCGACACCGCCGCTCCCTCCTCGGACGAGGACGACGAGAACAATGACCAAG 1260 consensus_7963#1 ------------------------------------------------------------ consensus_7963#0 AAGAACCCGAGCAGCAGGCCGACGAGGTCGCGCACGACGAGGAGGAGGAGGAGGACGACG 1320 consensus_7963#1 ------------------------------------------------------------ consensus_7963#0 AGGATGACGAGGAGGAGGTCGAGGTCGTGGACAGGGGCACCATCGTCGAGGTCAAGGTCA 1380 consensus_7963#1 ------------------------------------------------------------ consensus_7963#0 GCACGCAGCCGCAGGCGCGCAGCAACGGCGGCGGCAGTGTTGGGCCGCGGGTGCACCGCT 1440 consensus_7963#1 ------------------------------------------------------------ consensus_7963#0 CCTCGCTCGTCATCAACAAGTTCGTCAACGCCGAGCCGGCCATCGCCGCCTCCGACATCA 1500 consensus_7963#1 ------------------------------------------------------------ consensus_7963#0 GCGACACCGCCGCCACCGCACCCAATCCCCCGAGACGCCCGACCGGGTCCACCACCACGG 1560 consensus_7963#1 ------------------------------------------------------------ consensus_7963#0 CGGCCGCAGCTCTCGTCGCAGCCTCATCTCTGAGCGCGACCTCGGCTCCGTCGGGCAGTG 1620 consensus_7963#1 ----------TCTCGTCGCAGCCTCATCTCTGAGCGCGACCTCGGCTCCGTCGGGCAGTG 50 ************************************************** consensus_7963#0 ACAACCCCGGCGGCGAGAGCAAGCTGCTGATGACGACCTGCCGGCGCCGGCGGAGCAAGG 1680 consensus_7963#1 ACAACCCCGGCGGCGAGAGCAAGCTGCTGATGACGACCTGCCGGCGCCGGCGGAN-AAGG 109 ****************************************************** **** consensus_7963#0 AGGAGCTCATGAACCACATGCGCCGATGCGGGCAGCTCAGCGGCAAGCTCTTCATATGGG 1740 consensus_7963#1 AGGAGCTCATGAACCACATGCGCCGATGCGGGCAGCTCAGCGGCAAGCTCTTCATATGGG 169 ************************************************************ consensus_7963#0 AGCCACGCATCGCCACCTCCTCCTGAGCCGACGAGCCTCGCCGCCGCCTCCTCTGCTCGC 1800 consensus_7963#1 AGCCACGCATCGCCACCNCCTCCTGAGCCGACGAGCCTCGCCGCCGCCTCCNCNGCTCGC 229 ***************** ********************************* * ****** consensus_7963#0 TTGTGCCACGAGTGCTCTGCTCTGCTCTGTTTGTTCGTAGCCGTTGTAACGTAAACGTGC 1860 consensus_7963#1 TTGTNCCACGAGTGCTCTGCTCTGCTCTGTTTGTTCGTAGCCGTTGTAACGTAAACGTGC 289 **** ******************************************************* consensus_7963#0 GTAATATTTGTGTTAGTAGCAAGGTGATCGCCACGTGATTGGCTTAGCCCTCTTGTCTGT 1920 consensus_7963#1 GTAATATTTGTGTTAGTAGCAAAAAAAAAAAAAAAAAAAATA------------------ 331 ********************** * * * consensus_7963#0 GTCTCCTTCCGTGAGTGAGAGGGAGGGAGCTAGATTTGCTTTCGTTTATCTCCATCCGTC 1980 consensus_7963#1 ------------------------------------------------------------ consensus_7963#0 CCCGTGTCTCGT 1992 consensus_7963#1 ------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||