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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7970#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1601 fasta sequence
[GATCGGTGGTCGAACACATGTTCCACGGCTCGCCGGCGGCGGTGGCGGCGTCGGCGGCGGTGGCGGAGATGAGGTTCACGACGGGGGGGTCGTCGACGCGGTCGTGGGAGCCGACGGTGACGGCGGACACGTCGGACCTGCACTACTGGATGCAGTGGCGCGCCGCGGTGTGCGCGCTGTCCGTGCTCGCGTGCATGGCCGTCGCGGCGTGCCTCGTGTGGCGCCACGAGGGCCCCGGCGCCGAACGCCGCCCCGGCGGCGCGTCCGGCGGCGGCGGCGGGAGCAAGGAGCGGCGGCGGCCGGGGGTGCTGTACGACGACGAGGCGTGGCGGCCATGCCTCCGGGACATCCACCCGGCGTGGCTGCTCGGCTACAGGCTCATCTCCTTCTTCGTCCTCCTCAGCTTGCTCATCGTCATTGTCATCTCCGATGGTGGCACCATCTTCTACTACTACACTCAGTGGACCTTCATTCTGGTGACGATTTACTTCGGGCTCGGCACGGCGTTGTCCATCTATGGATGCAGCAAGCTTGCTGATGAGAATGTTGTCACTGAAAGAACAGACATGGAGCTCGGCTCGTACGTCGCCCATGGAGCTGGTACTAAACCCAATTTGAATGGGGAAGATGACACAGGAGAGATTGCTGGATTCTGGGGTTACCTGCTCCAGATCATCTACCAGACAAATGCAGGCGCAGTGATGCTTACAGATTGTGTGTTTTGGTTCATCATCTTCCCATTCCTTACAGTCAAAGATTACAATCTAAATTTTTTGTTGATAGGAATGCACTCGGT-AAATGCCGTTTTCTTGCTT-GGTGAAGCTGCCCTG-AATAGCTTGAGCTTCCCTT-GGTTCCGGGTCGCATATTTCTTTCTCTGGACTGCTCTCTATGTCATTTTTCAATGGATTCTCCATGCATCAACTCCACTTTGGTGGCCATACCCATTTCTCGATGTTTCAGCTAATTTATCTCCTTTGTGGTACTTCGCCGTCGCGATCATGCAATTACCATGCTACGCGGTATTCAGACTGGTGATCAAACTGAAACACCACCTGCTCACAAGGTGGTTTCCGGGTTCAGTCGTAAGAGGCTCATCTACACCATAAGCCAGGCCGTCATGCATCATCTTCCTCCGCCATTGCCAACAGTTTATACAGAAAGGGCAATGGTGAAGATCACAAGAAAAGAATAATGGCAGCCTGGTGGTGATGGACTGATGGTGGCATCGATCACCGACTCCATTTCCATTCCTCCTTTGCGAGATTCTCTTATTGCAGCAGGTGCAACTCTCCGAGCGAAAAAAGAAAACAGGAGAGGCACATGCGTTTTACACCACCGTATAGTAGTTCTGATAGATGTAAATTGAAGCTTACAGGTTCAGATATGAGATTCAGAGAGTTTTTCTTTTTCTTTTTGGATGTAATGGAAACTGAAATGAACAGAGAGAAAAAAAAGAGTGTGGTGGGGTTATGTATAGCTTGACTCATTGACTGATTGGTCAAATGGAGGAGATATTTGTTAACATTTTTTTTATTTTGTAGAGCTGATTAATTAATGGTCATTTGTATATGTGATTAATGCTAATGAGTAATGAATGGATG]
[+] EMBL AK120974 [GATCGGTGGTCGAACACATGTTCCACGGCTCGCCGGCGGCGGTGGCGGCGTCGGCGGCGGTGGCGGAGATGAGGTTCACGACGGGGGGGTCGTCGACGCGGTCGTGGGAGCCGACGGTGACGGCGGACACGTCGGACCTGCACTACTGGATGCAGTGGCGCGCCGCGGTGTGCGCGCTGTCCGTGCTCGCGTGCATGGCCGTCGCGGCGTGCCTCGTGTGGCGCCACGAGGGCCCCGGCGCCGAACGCCGCCCCGGCGGCGCGTCCGGCGGCGGCGGCGGGAGCAAGGAGCGGCGGCGGCCGGGGGTGCTGTACGACGACGAGGCGTGGCGGCCATGCCTCCGGGACATCCACCCGGCGTGGCTGCTCGGCTACAGGCTCATCTCCTTCTTCGTCCTCCTCAGCTTGCTCATCGTCATTGTCATCTCCGATGGTGGCACCATCTTCTACTACTACACTCAGTGGACCTTCATTCTGGTGACGATTTACTTCGGGCTCGGCACGGCGTTGTCCATCTATGGATGCAGCAAGCTTGCTGATGAGAATGTTGTCACTGAAAGAACAGACATGGAGCTCGGCTCGTACGTCGCCCATGGAGCTGGTACTAAACCCAATTTGAATGGGGAAGATGACACAGGAGAGATTGCTGGATTCTGGGGTTACCTGCTCCAGATCATCTACCAGACAAATGCAGGCGCAGTGATGCTTACAGATTGTGTGTTTTGGTTCATCATCTTCCCATTCCTTACAGTCAAAGATTACAATCTAAATTTTTTGTTGATAGGAATGCACTCGGT AAATGCCGTTTTCTTGCTT GGTGAAGCTGCCCTG AATAGCTTGAGCTTCCCTT GGTTCCGGGTCGCATATTTCTTTCTCTGGACTGCTCTCTATGTCATTTTTCAATGGATTCTCCATGCATCAACTCCACTTTGGTGGCCATACCCATTTCTCGATGTTTCAGCTAATTTATCTCCTTTGTGGTACTTCGCCGTCGCGATCATGCAATTACCATGCTACGCGGTATTCAGACTGGTGATCAAACTGAAACACCACCTGCTCACAAGGTGGTTTCCGGGTTCAGTCGTAAGAGGCTCATCTACACCATAAGCCAGGCCGTCATGCATCATCTTCCTCCGCCATTGCCAACAGTTTATACAGAAAGGGCAATGGTGAAGATCACAAGAAAAGAATAATGGCAGCCTGGTGGTGATGGACTGATGGTGGCATCGATCACCGACTCCATTTCCATTCCTCCTTTGCGAGATTCTCTTATTGCAGCAGGTGCAACTCTCCGAGCGAAAAAAGAAAACAGGAGAGGCACATGCGTTTTACACCACCGTATAGTAGTTCTGATAGATGTAAATTGAAGCTTACAGGTTCAGATATGAGATTCAGAGAGTTTTTCTTTTTCTTTTTGGATGTAATGGAAACTGAAATGAACAGAGAGAAAAAAAAGAGTGTGGTGGGGTTATGTATAGCTTGACTCATTGACTGATTGGTCAAATGGAGGAGATATTTGTTAACATTTTTTTTATTTTGTAGAGCTGATTAATTAATGGTCATTTGTATATGTGATTAATGCTAATGAGTAATGAATGGATG]
[+] EMBL C74799 [ TACGTCGCCCATGGAGCTGGTACTAAACCCAATTTGAATGGGGAAGATGACACAGGAGAGATTGCTGGATTCTGGGGTTACCTGCTCCAGATCATCTANCAGACAAATGNAGGCGCAGTGATGCTTACAGATTGTGTGTTTTGGTTCATCATCTTCCCATTCCTTACAGTCAAAGATTACAATCTAAATTNTTTGTTGATAGGAATGCACTCGGTAAAATGCCGTTTTCTTGCTTGGGTGAAGCTGCCCTGAAATAGCTTGAGCTNCCCTTGGGTTCCG ]
consensusID : consensus_7970#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 595 fasta sequence
[CTCGATGTTTCAGCTAATTTATCTCCTTTGTGGTACTTCGCCGTCGCGATCATGCAATTACCATGCTACGCGGTATTCAGACTGGTGATCAAACTGAAACACCACCTGCTCACAAGGTGGTTTCCGGGTTCAGTCGTAAGAGGCTCATCTACACCATAAGCCAGGCCGTCATGCATCATCTTCCTCCGCCATTGCCAACAGTTTATACAGAAAGGGCAATGGTGAAGATCACAAGAAAAGAATAATGGCAGCCTGGTGGTGATGGACTGATGGTGGCATCGATCACCGACTCCATTTCCATTCCTCCTTTGCGAGATTCTCTTATTGCAGCAGGTGCAACTCTCCGAGCGAAAAAAGAAAACAGGAGAGGCACATGCGTTTTACACCACCGTATAGTAGTTCTGATAGATGTAAATTGAAGCTTACAGGTTCAGATATGAGATTCAGAGAGTTTTTCTTTTTCTTTTTGGATGTAATGGAAACTGAAATGAACAGAGAGAAAAAAAAGAGTGTGGTGGGGTTATGTATAGCTTGACTCATTGACTGATTGGTCAAATGGAGGAG-ATATTTGTTAACAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF303799 [CTCGATGTTTCAGCTAATTTATCTCCTTTGTGGTACTTCGCCGTCGCGATCATGCAATTACCATGCTACGCGGTATTCAGACTGGTGATCAAACTGAAACACCACCTGCTCACAAGGTGGTTTCCGGGTTCAGTCGTAAGAGGCTCATCTACACCATAAGCCAGGCCGTCATGCATCATCTTCCTCCGCCATTGCCAACAGTTTATACAGAAAGGGCAATGGTGAAGATCACAAGAAAAGAATAATGGCAGCCTGGTGGTGATGGACTGATGGTGGCATCGATCACCGACTCCATTTCCATTCCTCCTTTGCGAGATTCTCTTATTGCAGCAGGTGCAACTCTCCGAGCGAAAAAAGAAAACAGGAGAGGCACATGCGTTTTACACCACCGTATAGTAGTTCTGATAGATGTAAATTGAAGCTTACAGGTTCAGATATGAGATTCAGAGAGTTTTTCTTTTTCTTTTTGGATGTAATGGAAACTGAAATGAACAGAGAGAAAAAAAAGAGTGTGGTGGGGTTATGTATAGCTTGACTCATTGACTGATTGGTCAAATGGAGGAG ATATTTGTTAACAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF303574 [ CAATTACCATGCTACGCGGTATTCAGACTGGTGATCAAACTGAAACACCACCTGCTCACAAGGTGGTTTCCGGGTTCAGTCGTAAGAGGCTCATCTACACCATAAGCCAGGCCGTCATGCATCATCTTCCTCCGCCATTGCCAACAGTTTATACAGAAAGGGCAATGGTGAAGATCACAAGAAAAGAATAATGGCAGCCTGGTGGTGATGGACTGATGGTGGCATCGATCACCGACTCCATTTCCATTCCTCCTTTGCGAGATTCTCTTATTGCAGCAGGTGCAACTCTCCGAGCGAAAAAAGAAAACAGGAGAGGCACATGCGTTTTACACCACCGTATAGTAGTTCTGATAGATGTAAATTGAAGCTTACAGGTTCAGATATGAGATTCAGAGAGTTTTTCTTTTTCTTTTTGGATGTAATGGAAACTGAAATGAACAGAGAGAAAAAAAAGAGTGTGGTGGGGTTATGTATAGCTTGACTCATTGACTGATTGGTCAAATGGAGGAG ATATTTGTTAACAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF304748 [ CCGGGTTCAGTCGTAAGAGGCTCATCTACACCATAAGCCAGGCCGTCATGCATCATCTTCCTCCGCCATTGCCAACAGTTTATACAGAAAGGGCAATGGTGAAGATCACAAGAAAAGAATAATGGCAGCCTGGTGGTGATGGACTGATGGTGGCATCGATCACCGACTCCATTTCCATTCCTCCTTTGCGAGATTCTCTTATTGCAGCAGGTGCAACTCTCCGAGCGAAAAAAGAAAACAGGAGAGGCACATGCGTTTTACACCACCGTATAGTAGTTCTGATAGATGTAAATTGAAGCTTACAGGTTCAGATATGAGATTCAGAGAGTTTTTCTTTTTCTTTTTGGATGTAATGGAAACTGAAATGAACAGAGAGAAAAAAAAGAGTGTGGTGGGGTTATGTATAGCTTGACTCATTGACTGATTGGTCAAATGGAGGAGAATATTTGTTAACAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7970#0 GATCGGTGGTCGAACACATGTTCCACGGCTCGCCGGCGGCGGTGGCGGCGTCGGCGGCGG 60
consensus_7970#1 ------------------------------------------------------------
consensus_7970#0 TGGCGGAGATGAGGTTCACGACGGGGGGGTCGTCGACGCGGTCGTGGGAGCCGACGGTGA 120
consensus_7970#1 ------------------------------------------------------------
consensus_7970#0 CGGCGGACACGTCGGACCTGCACTACTGGATGCAGTGGCGCGCCGCGGTGTGCGCGCTGT 180
consensus_7970#1 ------------------------------------------------------------
consensus_7970#0 CCGTGCTCGCGTGCATGGCCGTCGCGGCGTGCCTCGTGTGGCGCCACGAGGGCCCCGGCG 240
consensus_7970#1 ------------------------------------------------------------
consensus_7970#0 CCGAACGCCGCCCCGGCGGCGCGTCCGGCGGCGGCGGCGGGAGCAAGGAGCGGCGGCGGC 300
consensus_7970#1 ------------------------------------------------------------
consensus_7970#0 CGGGGGTGCTGTACGACGACGAGGCGTGGCGGCCATGCCTCCGGGACATCCACCCGGCGT 360
consensus_7970#1 ------------------------------------------------------------
consensus_7970#0 GGCTGCTCGGCTACAGGCTCATCTCCTTCTTCGTCCTCCTCAGCTTGCTCATCGTCATTG 420
consensus_7970#1 ------------------------------------------------------------
consensus_7970#0 TCATCTCCGATGGTGGCACCATCTTCTACTACTACACTCAGTGGACCTTCATTCTGGTGA 480
consensus_7970#1 ------------------------------------------------------------
consensus_7970#0 CGATTTACTTCGGGCTCGGCACGGCGTTGTCCATCTATGGATGCAGCAAGCTTGCTGATG 540
consensus_7970#1 ------------------------------------------------------------
consensus_7970#0 AGAATGTTGTCACTGAAAGAACAGACATGGAGCTCGGCTCGTACGTCGCCCATGGAGCTG 600
consensus_7970#1 ------------------------------------------------------------
consensus_7970#0 GTACTAAACCCAATTTGAATGGGGAAGATGACACAGGAGAGATTGCTGGATTCTGGGGTT 660
consensus_7970#1 ------------------------------------------------------------
consensus_7970#0 ACCTGCTCCAGATCATCTACCAGACAAATGCAGGCGCAGTGATGCTTACAGATTGTGTGT 720
consensus_7970#1 ------------------------------------------------------------
consensus_7970#0 TTTGGTTCATCATCTTCCCATTCCTTACAGTCAAAGATTACAATCTAAATTTTTTGTTGA 780
consensus_7970#1 ------------------------------------------------------------
consensus_7970#0 TAGGAATGCACTCGGTAAATGCCGTTTTCTTGCTTGGTGAAGCTGCCCTGAATAGCTTGA 840
consensus_7970#1 ------------------------------------------------------------
consensus_7970#0 GCTTCCCTTGGTTCCGGGTCGCATATTTCTTTCTCTGGACTGCTCTCTATGTCATTTTTC 900
consensus_7970#1 ------------------------------------------------------------
consensus_7970#0 AATGGATTCTCCATGCATCAACTCCACTTTGGTGGCCATACCCATTTCTCGATGTTTCAG 960
consensus_7970#1 -----------------------------------------------CTCGATGTTTCAG 13
*************
consensus_7970#0 CTAATTTATCTCCTTTGTGGTACTTCGCCGTCGCGATCATGCAATTACCATGCTACGCGG 1020
consensus_7970#1 CTAATTTATCTCCTTTGTGGTACTTCGCCGTCGCGATCATGCAATTACCATGCTACGCGG 73
************************************************************
consensus_7970#0 TATTCAGACTGGTGATCAAACTGAAACACCACCTGCTCACAAGGTGGTTTCCGGGTTCAG 1080
consensus_7970#1 TATTCAGACTGGTGATCAAACTGAAACACCACCTGCTCACAAGGTGGTTTCCGGGTTCAG 133
************************************************************
consensus_7970#0 TCGTAAGAGGCTCATCTACACCATAAGCCAGGCCGTCATGCATCATCTTCCTCCGCCATT 1140
consensus_7970#1 TCGTAAGAGGCTCATCTACACCATAAGCCAGGCCGTCATGCATCATCTTCCTCCGCCATT 193
************************************************************
consensus_7970#0 GCCAACAGTTTATACAGAAAGGGCAATGGTGAAGATCACAAGAAAAGAATAATGGCAGCC 1200
consensus_7970#1 GCCAACAGTTTATACAGAAAGGGCAATGGTGAAGATCACAAGAAAAGAATAATGGCAGCC 253
************************************************************
consensus_7970#0 TGGTGGTGATGGACTGATGGTGGCATCGATCACCGACTCCATTTCCATTCCTCCTTTGCG 1260
consensus_7970#1 TGGTGGTGATGGACTGATGGTGGCATCGATCACCGACTCCATTTCCATTCCTCCTTTGCG 313
************************************************************
consensus_7970#0 AGATTCTCTTATTGCAGCAGGTGCAACTCTCCGAGCGAAAAAAGAAAACAGGAGAGGCAC 1320
consensus_7970#1 AGATTCTCTTATTGCAGCAGGTGCAACTCTCCGAGCGAAAAAAGAAAACAGGAGAGGCAC 373
************************************************************
consensus_7970#0 ATGCGTTTTACACCACCGTATAGTAGTTCTGATAGATGTAAATTGAAGCTTACAGGTTCA 1380
consensus_7970#1 ATGCGTTTTACACCACCGTATAGTAGTTCTGATAGATGTAAATTGAAGCTTACAGGTTCA 433
************************************************************
consensus_7970#0 GATATGAGATTCAGAGAGTTTTTCTTTTTCTTTTTGGATGTAATGGAAACTGAAATGAAC 1440
consensus_7970#1 GATATGAGATTCAGAGAGTTTTTCTTTTTCTTTTTGGATGTAATGGAAACTGAAATGAAC 493
************************************************************
consensus_7970#0 AGAGAGAAAAAAAAGAGTGTGGTGGGGTTATGTATAGCTTGACTCATTGACTGATTGGTC 1500
consensus_7970#1 AGAGAGAAAAAAAAGAGTGTGGTGGGGTTATGTATAGCTTGACTCATTGACTGATTGGTC 553
************************************************************
consensus_7970#0 AAATGGAGGAGATATTTGTTAACATTTTTTTTATTTTGTAGAGCTGATTAATTAATGGTC 1560
consensus_7970#1 AAATGGAGGAGATATTTGTTAACAAAAAAAAAAAAAAAAAAA------------------ 595
************************ * * *
consensus_7970#0 ATTTGTATATGTGATTAATGCTAATGAGTAATGAATGGATG 1601
consensus_7970#1 -----------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||