cluster # 7973

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Oryza sativa
cluster # 7973 cluster # 7973 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7973#0 length = 670 sequences # 1

consensus_7973#1 length = 650 sequences # 4

consensusID : consensus_7973#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 670
fasta sequence

                              [TTTTTTTTTTATGTTATTTTGTGAAGGAATGAAAAGAACTCTATATAGAATGATAGAATGGGTTGGGAATTATGCCTAGATCCCGTATAAATGGAAATTTCATTGATAAGACCTTCTCAATTGTAGCCAATATTTTATTGCGAATAATTCCGACAACCTCCGGGGAAAAAAGGGCATTTACTTATTATAGAGATGGTGCGATTTGACTCTTTTTTTTGTTTTTTTAGCCCTACCTACACCCCGGTTTTACGAGAAAGAGTGGGGGTTCGCGGAGAGAAAACCAAATTAGTAAGGGAAACCCACGCTTAGGGAAGGTGAGGTGAACTAACAACTCCTTCTGTCGTGTATCCTCGACTGACGCGGCCTCGGATGCTTCAATTGTAGATTTTAGTATTGAGCGAAAGGTTACACCTACAGGATAGGTTCTGTATTACAGGCTAATCCTACTCTACTAGTACTAATAGGTAGCATAGGGGATAAAAGCACTACACCTAGAAATAGGAATCAACAAGAGAAAAACTTTGTTAGAAATTAACCCTTTCCTGATTGGTATCAGGGCTGGGAAGAATGGTTGGGATAACAAACAACCATCAAGTTTGTACTTTGGATACCCCTATNACCATCANAGATCGTTGAAGTGGCTAATTCCTCTAAATAGGAGGCGTTGAGA]

[+] EMBL CA762807             [TTTTTTTTTTATGTTATTTTGTGAAGGAATGAAAAGAACTCTATATAGAATGATAGAATGGGTTGGGAATTATGCCTAGATCCCGTATAAATGGAAATTTCATTGATAAGACCTTCTCAATTGTAGCCAATATTTTATTGCGAATAATTCCGACAACCTCCGGGGAAAAAAGGGCATTTACTTATTATAGAGATGGTGCGATTTGACTCTTTTTTTTGTTTTTTTAGCCCTACCTACACCCCGGTTTTACGAGAAAGAGTGGGGGTTCGCGGAGAGAAAACCAAATTAGTAAGGGAAACCCACGCTTAGGGAAGGTGAGGTGAACTAACAACTCCTTCTGTCGTGTATCCTCGACTGACGCGGCCTCGGATGCTTCAATTGTAGATTTTAGTATTGAGCGAAAGGTTACACCTACAGGATAGGTTCTGTATTACAGGCTAATCCTACTCTACTAGTACTAATAGGTAGCATAGGGGATAAAAGCACTACACCTAGAAATAGGAATCAACAAGAGAAAAACTTTGTTAGAAATTAACCCTTTCCTGATTGGTATCAGGGCTGGGAAGAATGGTTGGGATAACAAACAACCATCAAGTTTGTACTTTGGATACCCCTATNACCATCANAGATCGTTGAAGTGGCTAATTCCTCTAAATAGGAGGCGTTGAGA]




>consensus_7973#0
TTTTTTTTTTATGTTATTTTGTGAAGGAATGAAAAGAACTCTATATAGAATGATAGAATG
GGTTGGGAATTATGCCTAGATCCCGTATAAATGGAAATTTCATTGATAAGACCTTCTCAA
TTGTAGCCAATATTTTATTGCGAATAATTCCGACAACCTCCGGGGAAAAAAGGGCATTTA
CTTATTATAGAGATGGTGCGATTTGACTCTTTTTTTTGTTTTTTTAGCCCTACCTACACC
CCGGTTTTACGAGAAAGAGTGGGGGTTCGCGGAGAGAAAACCAAATTAGTAAGGGAAACC
CACGCTTAGGGAAGGTGAGGTGAACTAACAACTCCTTCTGTCGTGTATCCTCGACTGACG
CGGCCTCGGATGCTTCAATTGTAGATTTTAGTATTGAGCGAAAGGTTACACCTACAGGAT
AGGTTCTGTATTACAGGCTAATCCTACTCTACTAGTACTAATAGGTAGCATAGGGGATAA
AAGCACTACACCTAGAAATAGGAATCAACAAGAGAAAAACTTTGTTAGAAATTAACCCTT
TCCTGATTGGTATCAGGGCTGGGAAGAATGGTTGGGATAACAAACAACCATCAAGTTTGT
ACTTTGGATACCCCTATNACCATCANAGATCGTTGAAGTGGCTAATTCCTCTAAATAGGA
GGCGTTGAGA

consensusID : consensus_7973#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 650
fasta sequence

                              [TTTTTTTTTTTTTTTTTTATGGTATTTTGGGAAGGAATGAAAAGAATTCTATATAGAATGATAGAATGGGTTGGGAATTATGCCTAGATCCCGTATAAATGGAAATTTCATTGATAAGACCTTCTCAATTGTAGCCAATATTTTATTGCGAATAATTCCGACAACCTCCGGGGAAAAAAGGGCATTTACTTATTATAGAGATGGGATGTTGGCTCAATCCGAAGGAAATTATGCGGAAGCTTTGCAAAATTATTATGAAGCTATGCGACTAGAAATTGATCCCTATGATCGAAGTTATATACTCTATAACATAGGCCTTATACACACAAGCAATGGAGAGCATACAAAGGCTTTGGAATATTATTTCCGGGCACTAGAACGAAACCCCTTGTCTCGTCCTCTTTCACCTACGGGGCTTACCCTCCCCCGTCCCTGCACGGGCGCGCCGAGGCCCCACCAGCCCTATAACCGCATCGCACGTCCCGAGCCTGCTCGACCGCGGATCCCGTCCGTGCCGACCCATGCATTCCGCGCTCCTGCACCCAGTTAGATGCCTGGCCCTCAACTGCCCTATTCGTTGCCGGCGCTGCCCGTGAATAGTGCCAGCCCGTTCGTTGCTCGCGCCCCCGCCATATGCCATTGACTTGCGC]

[+] EMBL CA762805             [TTTTTTTTTTTTTTTTTTATGGTATTTTGGGAAGGAATGAAAAGAATTCTATATAGAATGATAGAATGGGTTGGGAATTATGCCTAGATCCCGTATAAATGGAAATTTCATTGATAAGACCTTCTCAATTGTAGCCAATATTTTATTGCGAATAATTCCGACAACCTCCGGGGAAAAAAGGGCATTTACTTATTATAGAGATGGGATGTTGGCTCAATCCGAAGGAAATTATGCGGAAGCTTTGCAAAATTATTATGAAGCTATGCGACTAGAAATTGATCCCTATGATCGAAGTTATATACTCTATAACATAGGCCTTATACACACAAGCAATGGAGAGCATACAAAGGCTTTGGAATATTATTTCCGGGCACTAGAACGAAACCCCTTGTCTCGTCCTCT                                                                                                                                                                                                                                                        ]
[+] EMBL CA762804             [TTTTTTTTTTTTTTTTTTATGGTATTTTGGGAAGGAATGAAAAGAATTCTATATAGAATGATAGAATGGGTTGGGAATTATGCCTAGATCCCGTATAAATGGAAATTTCATTGATAAGACCTTCTCAATTGTAGCCAATATTTTATTGCGAATAATTCCGACAACCTCCGGGGAAAAAAGGGCATTTACTTATTATAGAGATGGGATGTTGGCTCAATCCGAAGGAAATTATGCGGAAGCTTTGCAAAATTATTATGAAGCTATGCGACTAGAAATTGATCCCTATGATCGAAGTTATATACTCTATAACATAGGCCTTATACACACAAGCAATGGAGAGCATACAAAGGCTTTGGAATATTATTTCCGGGCACTAGAACGAAACCCCTTGTCTCGTCCTCT                                                                                                                                                                                                                                                        ]
[+] EMBL CA762806             [   TTTTTTTTTTTTTTTATGTTATTTTGTGAAGGAATGAAAAGAATTCTATATAGAATGATAGAATGGGTTGGGAATTATGCCTAGATCCCGTATAAATGGAAATTTCATTGATAAGACCTTCTCAATTGTAGCCAATATTTTATTGCGAATAATTCCCACAACCTCCGGGGAAAAAAGGGCATTTACTTATTATAGAGATGGCATGCTCGCTCAATCCGAAGGAAATTATGCGGAAGCTTTGCAAAACTATTATGAAGCTATGCGACTAGAAATTGATCCCTATCATCCAAGTTATCTACTCTATAACATACGCCTTATGCACACCAGCAGCGGAGAGCATACCCAGGCTTTGGAATATTATTTGCGTGCACTA CACCAAATCGCTTGGCTCCGCGTGCTTCACCTACGGGGCTTACCCTCCCCCGTCCCTGCACGGGCGCGCCGAGGCCCCACCAGCCCTATAACCGCATCGCACGTCCCGAGCCTGCTCGACCGCGGATCCCGTCCGTGCCGACCCATGCATTCCGCGCTCCTGCACCCAGTTAGATGCCTGGCCCTCAACTGCCCTATTCGTTGCCGGCGCTGCCCGTGAATAGTGCCAGCCCGTTCGTTGCTCGCGCCCCCGCCATATGCCATTGACTTGCGC]
[-] EMBL CB096351             [                 TATGTTATTTTGTGAAGGAATGAAAAGAATTCTATATAGAATGATAGAATGGGTTGGGAATTATGCCTAGATCCCGTATAAATGGAAATTTCATTGATAAGACCTTCTCAATTGTAGCCAATATTTTATTGCGAATAATTCCGACAACCTCCGGGGAAAAAAGGGCATTTACTTATTATAGAGATGGGATGTTGGCTCAATCCGAAGGAAATTATGCGGAAGCTTTGCAAAATTATTATGAAGCTATGCGACTAGAAATTGATCCCTATGATCGAAGTTATATACTCTATAACATAGGCCTTATACACACAAGCAATGGAGAGCATACAAAGGCTTTGGAATATTATTTCCGGGCACTA                                                                                                                                                                                                                                                                                  ]




>consensus_7973#1
TTTTTTTTTTTTTTTTTTATGGTATTTTGGGAAGGAATGAAAAGAATTCTATATAGAATG
ATAGAATGGGTTGGGAATTATGCCTAGATCCCGTATAAATGGAAATTTCATTGATAAGAC
CTTCTCAATTGTAGCCAATATTTTATTGCGAATAATTCCGACAACCTCCGGGGAAAAAAG
GGCATTTACTTATTATAGAGATGGGATGTTGGCTCAATCCGAAGGAAATTATGCGGAAGC
TTTGCAAAATTATTATGAAGCTATGCGACTAGAAATTGATCCCTATGATCGAAGTTATAT
ACTCTATAACATAGGCCTTATACACACAAGCAATGGAGAGCATACAAAGGCTTTGGAATA
TTATTTCCGGGCACTAGAACGAAACCCCTTGTCTCGTCCTCTTTCACCTACGGGGCTTAC
CCTCCCCCGTCCCTGCACGGGCGCGCCGAGGCCCCACCAGCCCTATAACCGCATCGCACG
TCCCGAGCCTGCTCGACCGCGGATCCCGTCCGTGCCGACCCATGCATTCCGCGCTCCTGC
ACCCAGTTAGATGCCTGGCCCTCAACTGCCCTATTCGTTGCCGGCGCTGCCCGTGAATAG
TGCCAGCCCGTTCGTTGCTCGCGCCCCCGCCATATGCCATTGACTTGCGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7973#0      --------TTTTTTTTTTATGTTATTTTGTGAAGGAATGAAAAGAACTCTATATAGAATG 52
consensus_7973#1      TTTTTTTTTTTTTTTTTTATGGTATTTTGGGAAGGAATGAAAAGAATTCTATATAGAATG 60
                              ************* ******* **************** *************

consensus_7973#0      ATAGAATGGGTTGGGAATTATGCCTAGATCCCGTATAAATGGAAATTTCATTGATAAGAC 112
consensus_7973#1      ATAGAATGGGTTGGGAATTATGCCTAGATCCCGTATAAATGGAAATTTCATTGATAAGAC 120
                      ************************************************************

consensus_7973#0      CTTCTCAATTGTAGCCAATATTTTATTGCGAATAATTCCGACAACCTCCGGGGAAAAAAG 172
consensus_7973#1      CTTCTCAATTGTAGCCAATATTTTATTGCGAATAATTCCGACAACCTCCGGGGAAAAAAG 180
                      ************************************************************

consensus_7973#0      GGCATTTACTTATTATAGAGATGGTGCGATTTGACTCTTTTTTTTGTTTTTTTAGCCCTA 232
consensus_7973#1      GGCATTTACTTATTATAGAGATGGGATG--TTGGCTCAATCCGAAGG-----------AA 227
                      ************************   *  *** ***  *     *             *

consensus_7973#0      CCTACACCCCGGTTTTACGAGAA-AGAGTGGGGGTTCGCGGAGAGAAAACCAAATTAGTA 291
consensus_7973#1      ATTATGCGGAAGCTTTGCAAAATTATTATGAAGCTATGCGACTAGAAATTGATCCCTATG 287
                        **  *    * *** * * *  *   **  * *  ***   *****   *      * 

consensus_7973#0      AGGGAAACCCACGCTTAGGGAAGGTGAGGTGAACTAACAACTCCTTCTGTCGTGTATCCT 351
consensus_7973#1      ATCGAAGTTATATACTCTATAACATAGGCCTTATACACA-CAAGCAATGGAGAGCAT--- 343
                      *  ***         *    **  *  *    *   *** *      **  * * **   

consensus_7973#0      CGACTGACGCGGCCTCGGATGCTTCAATTGTAGATTTTAGTATTGAGCGAAAGGTTACAC 411
consensus_7973#1      --ACAAA---GGCTTTGGA-ATATTATTTCCGGGCACTAGAACGAAACCCCTTGTCTCGT 397
                        **  *   *** * ***    * * **   *    *** *   * *     **  *  

consensus_7973#0      CTACAGGATAGGTTCTGTATTACAGGCTAATCCTACTCTACTAGTACTAATAGGTAGCAT 471
consensus_7973#1      CCTCTTTCACCTACGGGGCTTACCCTCCCCCGTCCCTGCACGGGCGCGCCGAGGCCCCAC 457
                      *  *            *  ****   *        **  **  *  *    ***   ** 

consensus_7973#0      AGGGGATAAAAGCACTACACCTAGAAATAGGAATCAACAAGAGAAAAACTTTGTTAGAAA 531
consensus_7973#1      CAGCCCTATAA---CCGCATCGCACGTCCCGAGCCTGCTCGACCGCGGATCCCGTCCGTG 514
                        *   ** **   *  ** *         **  *  *  **       *    *     

consensus_7973#0      TTAACCCTTTCCTGATTGGTATCAGGGCTGGGAAGAATGGTTGGGATAACAAACAACCAT 591
consensus_7973#1      CCGACCCATGCATTCCGCGCTCCTGCACCCAGTTAGATGCCTGG-----CCCTCAACTGC 569
                         **** * * *     *   * *  *   *    ***  ***     *   ****   

consensus_7973#0      CAAGTTTGTACTTTGGATACCCCTATNACCATCANAGATCGTTGAAGTGGCTAATTCCTC 651
consensus_7973#1      CCTATTCGTTGCCGGCGCTGCCCGTGAATAGTGCCAGCCCGTTC--GTTGCTCGCGCCCC 627
                      *   ** **     *     ***    *   *   **  ****   ** ***    ** *

consensus_7973#0      TAAATAGGAGGCGTTGAGA----- 670
consensus_7973#1      CGC-CATATGCCATTGACTTGCGC 650
                           *   * * ****