These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7973#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 670 fasta sequence [TTTTTTTTTTATGTTATTTTGTGAAGGAATGAAAAGAACTCTATATAGAATGATAGAATGGGTTGGGAATTATGCCTAGATCCCGTATAAATGGAAATTTCATTGATAAGACCTTCTCAATTGTAGCCAATATTTTATTGCGAATAATTCCGACAACCTCCGGGGAAAAAAGGGCATTTACTTATTATAGAGATGGTGCGATTTGACTCTTTTTTTTGTTTTTTTAGCCCTACCTACACCCCGGTTTTACGAGAAAGAGTGGGGGTTCGCGGAGAGAAAACCAAATTAGTAAGGGAAACCCACGCTTAGGGAAGGTGAGGTGAACTAACAACTCCTTCTGTCGTGTATCCTCGACTGACGCGGCCTCGGATGCTTCAATTGTAGATTTTAGTATTGAGCGAAAGGTTACACCTACAGGATAGGTTCTGTATTACAGGCTAATCCTACTCTACTAGTACTAATAGGTAGCATAGGGGATAAAAGCACTACACCTAGAAATAGGAATCAACAAGAGAAAAACTTTGTTAGAAATTAACCCTTTCCTGATTGGTATCAGGGCTGGGAAGAATGGTTGGGATAACAAACAACCATCAAGTTTGTACTTTGGATACCCCTATNACCATCANAGATCGTTGAAGTGGCTAATTCCTCTAAATAGGAGGCGTTGAGA] [+] EMBL CA762807 [TTTTTTTTTTATGTTATTTTGTGAAGGAATGAAAAGAACTCTATATAGAATGATAGAATGGGTTGGGAATTATGCCTAGATCCCGTATAAATGGAAATTTCATTGATAAGACCTTCTCAATTGTAGCCAATATTTTATTGCGAATAATTCCGACAACCTCCGGGGAAAAAAGGGCATTTACTTATTATAGAGATGGTGCGATTTGACTCTTTTTTTTGTTTTTTTAGCCCTACCTACACCCCGGTTTTACGAGAAAGAGTGGGGGTTCGCGGAGAGAAAACCAAATTAGTAAGGGAAACCCACGCTTAGGGAAGGTGAGGTGAACTAACAACTCCTTCTGTCGTGTATCCTCGACTGACGCGGCCTCGGATGCTTCAATTGTAGATTTTAGTATTGAGCGAAAGGTTACACCTACAGGATAGGTTCTGTATTACAGGCTAATCCTACTCTACTAGTACTAATAGGTAGCATAGGGGATAAAAGCACTACACCTAGAAATAGGAATCAACAAGAGAAAAACTTTGTTAGAAATTAACCCTTTCCTGATTGGTATCAGGGCTGGGAAGAATGGTTGGGATAACAAACAACCATCAAGTTTGTACTTTGGATACCCCTATNACCATCANAGATCGTTGAAGTGGCTAATTCCTCTAAATAGGAGGCGTTGAGA] consensusID : consensus_7973#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 650 fasta sequence [TTTTTTTTTTTTTTTTTTATGGTATTTTGGGAAGGAATGAAAAGAATTCTATATAGAATGATAGAATGGGTTGGGAATTATGCCTAGATCCCGTATAAATGGAAATTTCATTGATAAGACCTTCTCAATTGTAGCCAATATTTTATTGCGAATAATTCCGACAACCTCCGGGGAAAAAAGGGCATTTACTTATTATAGAGATGGGATGTTGGCTCAATCCGAAGGAAATTATGCGGAAGCTTTGCAAAATTATTATGAAGCTATGCGACTAGAAATTGATCCCTATGATCGAAGTTATATACTCTATAACATAGGCCTTATACACACAAGCAATGGAGAGCATACAAAGGCTTTGGAATATTATTTCCGGGCACTAGAACGAAACCCCTTGTCTCGTCCTCTTTCACCTACGGGGCTTACCCTCCCCCGTCCCTGCACGGGCGCGCCGAGGCCCCACCAGCCCTATAACCGCATCGCACGTCCCGAGCCTGCTCGACCGCGGATCCCGTCCGTGCCGACCCATGCATTCCGCGCTCCTGCACCCAGTTAGATGCCTGGCCCTCAACTGCCCTATTCGTTGCCGGCGCTGCCCGTGAATAGTGCCAGCCCGTTCGTTGCTCGCGCCCCCGCCATATGCCATTGACTTGCGC] [+] EMBL CA762805 [TTTTTTTTTTTTTTTTTTATGGTATTTTGGGAAGGAATGAAAAGAATTCTATATAGAATGATAGAATGGGTTGGGAATTATGCCTAGATCCCGTATAAATGGAAATTTCATTGATAAGACCTTCTCAATTGTAGCCAATATTTTATTGCGAATAATTCCGACAACCTCCGGGGAAAAAAGGGCATTTACTTATTATAGAGATGGGATGTTGGCTCAATCCGAAGGAAATTATGCGGAAGCTTTGCAAAATTATTATGAAGCTATGCGACTAGAAATTGATCCCTATGATCGAAGTTATATACTCTATAACATAGGCCTTATACACACAAGCAATGGAGAGCATACAAAGGCTTTGGAATATTATTTCCGGGCACTAGAACGAAACCCCTTGTCTCGTCCTCT ] [+] EMBL CA762804 [TTTTTTTTTTTTTTTTTTATGGTATTTTGGGAAGGAATGAAAAGAATTCTATATAGAATGATAGAATGGGTTGGGAATTATGCCTAGATCCCGTATAAATGGAAATTTCATTGATAAGACCTTCTCAATTGTAGCCAATATTTTATTGCGAATAATTCCGACAACCTCCGGGGAAAAAAGGGCATTTACTTATTATAGAGATGGGATGTTGGCTCAATCCGAAGGAAATTATGCGGAAGCTTTGCAAAATTATTATGAAGCTATGCGACTAGAAATTGATCCCTATGATCGAAGTTATATACTCTATAACATAGGCCTTATACACACAAGCAATGGAGAGCATACAAAGGCTTTGGAATATTATTTCCGGGCACTAGAACGAAACCCCTTGTCTCGTCCTCT ] [+] EMBL CA762806 [ TTTTTTTTTTTTTTTATGTTATTTTGTGAAGGAATGAAAAGAATTCTATATAGAATGATAGAATGGGTTGGGAATTATGCCTAGATCCCGTATAAATGGAAATTTCATTGATAAGACCTTCTCAATTGTAGCCAATATTTTATTGCGAATAATTCCCACAACCTCCGGGGAAAAAAGGGCATTTACTTATTATAGAGATGGCATGCTCGCTCAATCCGAAGGAAATTATGCGGAAGCTTTGCAAAACTATTATGAAGCTATGCGACTAGAAATTGATCCCTATCATCCAAGTTATCTACTCTATAACATACGCCTTATGCACACCAGCAGCGGAGAGCATACCCAGGCTTTGGAATATTATTTGCGTGCACTA CACCAAATCGCTTGGCTCCGCGTGCTTCACCTACGGGGCTTACCCTCCCCCGTCCCTGCACGGGCGCGCCGAGGCCCCACCAGCCCTATAACCGCATCGCACGTCCCGAGCCTGCTCGACCGCGGATCCCGTCCGTGCCGACCCATGCATTCCGCGCTCCTGCACCCAGTTAGATGCCTGGCCCTCAACTGCCCTATTCGTTGCCGGCGCTGCCCGTGAATAGTGCCAGCCCGTTCGTTGCTCGCGCCCCCGCCATATGCCATTGACTTGCGC] [-] EMBL CB096351 [ TATGTTATTTTGTGAAGGAATGAAAAGAATTCTATATAGAATGATAGAATGGGTTGGGAATTATGCCTAGATCCCGTATAAATGGAAATTTCATTGATAAGACCTTCTCAATTGTAGCCAATATTTTATTGCGAATAATTCCGACAACCTCCGGGGAAAAAAGGGCATTTACTTATTATAGAGATGGGATGTTGGCTCAATCCGAAGGAAATTATGCGGAAGCTTTGCAAAATTATTATGAAGCTATGCGACTAGAAATTGATCCCTATGATCGAAGTTATATACTCTATAACATAGGCCTTATACACACAAGCAATGGAGAGCATACAAAGGCTTTGGAATATTATTTCCGGGCACTA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7973#0 --------TTTTTTTTTTATGTTATTTTGTGAAGGAATGAAAAGAACTCTATATAGAATG 52 consensus_7973#1 TTTTTTTTTTTTTTTTTTATGGTATTTTGGGAAGGAATGAAAAGAATTCTATATAGAATG 60 ************* ******* **************** ************* consensus_7973#0 ATAGAATGGGTTGGGAATTATGCCTAGATCCCGTATAAATGGAAATTTCATTGATAAGAC 112 consensus_7973#1 ATAGAATGGGTTGGGAATTATGCCTAGATCCCGTATAAATGGAAATTTCATTGATAAGAC 120 ************************************************************ consensus_7973#0 CTTCTCAATTGTAGCCAATATTTTATTGCGAATAATTCCGACAACCTCCGGGGAAAAAAG 172 consensus_7973#1 CTTCTCAATTGTAGCCAATATTTTATTGCGAATAATTCCGACAACCTCCGGGGAAAAAAG 180 ************************************************************ consensus_7973#0 GGCATTTACTTATTATAGAGATGGTGCGATTTGACTCTTTTTTTTGTTTTTTTAGCCCTA 232 consensus_7973#1 GGCATTTACTTATTATAGAGATGGGATG--TTGGCTCAATCCGAAGG-----------AA 227 ************************ * *** *** * * * consensus_7973#0 CCTACACCCCGGTTTTACGAGAA-AGAGTGGGGGTTCGCGGAGAGAAAACCAAATTAGTA 291 consensus_7973#1 ATTATGCGGAAGCTTTGCAAAATTATTATGAAGCTATGCGACTAGAAATTGATCCCTATG 287 ** * * *** * * * * ** * * *** ***** * * consensus_7973#0 AGGGAAACCCACGCTTAGGGAAGGTGAGGTGAACTAACAACTCCTTCTGTCGTGTATCCT 351 consensus_7973#1 ATCGAAGTTATATACTCTATAACATAGGCCTTATACACA-CAAGCAATGGAGAGCAT--- 343 * *** * ** * * * *** * ** * * ** consensus_7973#0 CGACTGACGCGGCCTCGGATGCTTCAATTGTAGATTTTAGTATTGAGCGAAAGGTTACAC 411 consensus_7973#1 --ACAAA---GGCTTTGGA-ATATTATTTCCGGGCACTAGAACGAAACCCCTTGTCTCGT 397 ** * *** * *** * * ** * *** * * * ** * consensus_7973#0 CTACAGGATAGGTTCTGTATTACAGGCTAATCCTACTCTACTAGTACTAATAGGTAGCAT 471 consensus_7973#1 CCTCTTTCACCTACGGGGCTTACCCTCCCCCGTCCCTGCACGGGCGCGCCGAGGCCCCAC 457 * * * **** * ** ** * * *** ** consensus_7973#0 AGGGGATAAAAGCACTACACCTAGAAATAGGAATCAACAAGAGAAAAACTTTGTTAGAAA 531 consensus_7973#1 CAGCCCTATAA---CCGCATCGCACGTCCCGAGCCTGCTCGACCGCGGATCCCGTCCGTG 514 * ** ** * ** * ** * * ** * * consensus_7973#0 TTAACCCTTTCCTGATTGGTATCAGGGCTGGGAAGAATGGTTGGGATAACAAACAACCAT 591 consensus_7973#1 CCGACCCATGCATTCCGCGCTCCTGCACCCAGTTAGATGCCTGG-----CCCTCAACTGC 569 **** * * * * * * * * *** *** * **** consensus_7973#0 CAAGTTTGTACTTTGGATACCCCTATNACCATCANAGATCGTTGAAGTGGCTAATTCCTC 651 consensus_7973#1 CCTATTCGTTGCCGGCGCTGCCCGTGAATAGTGCCAGCCCGTTC--GTTGCTCGCGCCCC 627 * ** ** * *** * * ** **** ** *** ** * consensus_7973#0 TAAATAGGAGGCGTTGAGA----- 670 consensus_7973#1 CGC-CATATGCCATTGACTTGCGC 650 * * * **** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||