These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7975#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 699 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTAGAAAACGTTTTATTGCAGGTTTATTTTTTTAAAAAAAATGGACCAAATTATATACAAAGCTCATTTTATACCACTAGGCACTAGCGTACAAGGATCATCGCAAAAACAAGAGGCAATGATCACATAACCCGTACTCAAT-CCAT-CCCATAAAGTACATAGCTAGAAGTTGATATTTTTTTTACAAGACGGAGGATGTACGTTGCATGAGGGATGTGACTGAGTCTCCCATAGCTGGTTATTTTGTGGGCCGAGCCAGATTCCCCAAAGAGAAGGCCCGGTTCGTTTCTTGGTTGGCCCTTGTGGCCCAAGAACAGCCTGGTAATGTAACAAGACGTTTGCTCTAACCACACCATGTCCACGGGAAAAGTACATCGATATGTACAGCATGTACAGTTAATATGAGGAACTTTCNA-CNGCGTTGCTGTATATATGGTCCCAATTCTGAGACTGAGCTTGAAATCATGTGTCCCCTGCAGGTTCAAGCAGTGAAAAGTCATAGAGATTTGTACTTCTCGATAAGATGCGACGCGTGCAGGCGAGACGTGGGTGTGATGGTGCACCCCAGGTTCCGGAGGTACGATATCTGCTTAGGTGTAGGTTCTGAGGAACCCATGGAGTTCTCTATCCTCTGCTTTTGGAAATGTTCCTGTCTCTCTCTCATCAAA] [-] EMBL AU091912 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTAGAAAACGTTTTATTGCAGGTTTATTTTTTTAAAAAAAATGGACCAAATTATATACAAAGCTCATTTTATACCACTAGGCACTAGCGTACAAGGATCATCGCAAAAACAAGAGGCAATGATCACATAACCCGTACTCAAT CCAT CCCATAAAGTACATAGCTAGAAGTTGATATTTTTTTTACAAGACGGAGGATGTACGTTGCATGAGGGATGTGACTGAGTCTCCCATAGCTGGTTATTTTGTGGGCCGAGCCAGATTCCCCAAAGAGAAGGCCCGGTTCGTTTCTTGGTTGGCCCTTGTGGCCCAAGAACAGCCTGGTAATGTAACAAGACGTTTGCTCTAACCACACCATGTCCACGGGAAAAGTACATCGATATGTACAGCATGTACAGTTAATATGAGGgaa ] [-] EMBL C73665 [ TTTAAAAAAAATGGNCCAAATTATATACAAAGCTCATTTTATACCACTAGGCACTAGCGTACAAGGATCATCGCAAAAACAAGAGGCAATGATCACATAACCCGTACTCAATCCCATCCCCATAAAGTACATAGCTAGAAGTTGATATTTTTTTTACAAGACGGAGGATGTACGTTGCATGAGGGATGTGACTGAGTCTCCCATAGCTGGTTATTTTGT GGCCGAGCCAGATTCCCCAAAGAGAAGGCCCGGTTCGTTTCTTGGTT GCCCTTGTGGCCCAAGAACAGCCTGGTAATGTAACAAGACGTTTGCTCTAACCACACCATGTCCACGGGAAAAGTACATCGATATGTACAGCATGTACAGTTAATATGAGGAACTTTCNA CNGCGTTGCTGTATATATGGTCCCAATTCTGAGACTGAGCTTGAAATCATGTGT ] [-] EMBL OS1421A [ CAAAGAGAA GCCCGG TCG TTCTTGGTTGGCCCTTGTGGCCCAAGAACACCCTGGTAATGTAACAAGACGTTTGCTCTAACCACACCATGTCCACGGGAAAAGTACATCGATATGTACAGCATGTACAGTTAATATGAGGAACTTTCAACCAGCGTTGCTGTATATATGGTCCCAATTCTGAGACTGAGCTTGAAATCATGTGTCCCCTGCAGGTTCAAGCAGTGAAAAGTCATAGAGATTTGTACTTCTCGATAAGATGCGACGCGTGCAGGCGAGACGTGGGTGTGATGGTGCACCCCAGGTTCCGGAGGTACGATATCTGCTTAGGTGTAGGTTCTGAGGAACCCATGGAGTTCTCTATCCTCTGCTTTTGGAAATGTTCCTGTCTCTCTCTCATCAAA] consensusID : consensus_7975#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 676 fasta sequence [TTTTTTTTTTTTTTTATACAAAGCTCATTTTATACCACTAGGCACTAGCGTACAAGGATCATCGCAAAAACAAGAGGCAATGATCACATAACCCGTACTCAATCCATCCCATAAAGTACATAGCTAGAAGTTGATATTTTTTTTACAAGACGGAGGATGTACGTTGCATGAGGGATGTGACTGAGTCTCCCATAGCTGGTTATTTTGTGGGCCGAGCCAGATTCCCCAAAGAGAAGGCCCGGTTCGTTTCTTGGTTGGCCCTTGTGGCCCAAGAACAGCCTGGTAATGTAACAAGACGTTTGCTCTAACCACACCATGTCCACGGGAAAAGTACATCGATATGTACAGCATGTACAGTTAATATGAGGAACTTTCACCAGCGTTGCTGTATATATGGCCCCAATTCTGAGACTGAGCTTGAAATCATGTGTCCCCTGCAGGTTCAAGCAGTGAAAAGTCATAGAGATTTGCACTTCTCGATAAGATGCGACCCGTGCAGGCAAGACGTGCGTGAGATGGTGCCCCCCAGGGTTCCGGAGGTACCAAATTCTGCTAAGGTGGAGGGGTCGAAGGAACCCATGCAGTTTTCTATTCCCCCGCTTTTTGGAAAGGGTCCTGGTTTCTCTATAAAAAAAAGGGGTCCCCTTTGGCTTGTGCCCTGGGCAACAAGCCTTAT] [+] EMBL CA761055 [TTTTTTTTTTTTTTTATACAAAGCTCATTTTATACCACTAGGCACTAGCGTACAAGGATCATCGCAAAAACAAGAGGCAATGATCACATAACCCGTACTCAATCCATCCCATAAAGTACATAGCTAGAAGTTGATATTTTTTTTACAAGACGGAGGATGTACGTTGCATGAGGGATGTGACTGAGTCTCCCATAGCTGGTTATTTTGTGGGCCGAGCCAGATTCCCCAAAGAGAAGGCCCGGTTCGTTTCTTGGTTGGCCCTTGTGGCCCAAGAACAGCCTGGTAATGTAACAAGACGTTTGCTCTAACCACACCATGTCCACGGGAAAAGTACATCGATATGTACAGCATGTACAGTTAATATGAGGAACTTTCACCAGCGTTGCTGTATATATGGCCCCAATTCTGAGACTGAGCTTGAAATCATGTGTCCCCTGCAGGTTCAAGCAGTGAAAAGTCATAGAGATTTGCACTTCTCGATAAGATGCGACCCGTGCAGGCAAGACGTGCGTGAGATGGTGCCCCCCAGGGTTCCGGAGGTACCAAATTCTGCTAAGGTGGAGGGGTCGAAGGAACCCATGCAGTTTTCTATTCCCCCGCTTTTTGGAAAGGGTCCTGGTTTCTCTATAAAAAAAAGGGGTCCCCTTTGGCTTGTGCCCTGGGCAACAAGCCTTAT] consensusID : consensus_7975#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 295 fasta sequence [TTTTTTTTTTGATCACATAACCCGTACTCAATCCATCCCATAAAGTACATAGCTAGAAGTTGATATTTTTTTACAAGACGGAGGATGTACTGTTGCATGAGGGATGTGACTGAGTCTCCCATAGCTGGTTATTATTTGTGGGCCGAGCCAGATTCCGCCAAAGAGAATGGCCGGTTCGTTTCTTGGTTGGCCCTTGTGGCCCAATGAACAGCCTGTGTCAATGTAACAGAGACGTTTGCGTCGTAACCGNAACCCAGTGGTCCCACGTGGAACACATGTACATCGATCATGTACC] [-] EMBL BQ906177 [TTTTTTTTTTGATCACATAACCCGTACTCAATCCATCCCATAAAGTACATAGCTAGAAGTTGATATTTTTTTACAAGACGGAGGATGTACTGTTGCATGAGGGATGTGACTGAGTCTCCCATAGCTGGTTATTATTTGTGGGCCGAGCCAGATTCCGCCAAAGAGAATGGCCGGTTCGTTTCTTGGTTGGCCCTTGTGGCCCAATGAACAGCCTGTGTCAATGTAACAGAGACGTTTGCGTCGTAACCGNAACCCAGTGGTCCCACGTGGAACACATGTACATCGATCATGTACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7975#1 ------------------------------------------------------------ consensus_7975#2 ------------------------------------------------------------ consensus_7975#0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTAGAAAACGTTTTATTGCAGGTTTATTT 60 consensus_7975#1 ----------TTTTTTTTTTTTTTTATACAAAGCTCATTTTATACCACTAGGCACTAGCG 50 consensus_7975#2 ------------------------------------------------------------ consensus_7975#0 TTTTAAAAAAAATGGACCAAATTATATACAAAGCTCATTTTATACCACTAGGCACTAGCG 120 consensus_7975#1 TACAAGGATCATCGCAAAAACAAGAGGCAATGATCACATAACCCGTACTCAATCCATCCC 110 consensus_7975#2 ---------------------TTTTTTTTTTGATCACATAACCCGTACTCAATCCATCCC 39 consensus_7975#0 TACAAGGATCATCGCAAAAACAAGAGGCAATGATCACATAACCCGTACTCAATCCATCCC 180 ****************************** consensus_7975#1 ATAAAGTACATAGCTAGAAGTTGATATTTTTTTTACAAGACGGAGGATGTAC-GTTGCAT 169 consensus_7975#2 ATAAAGTACATAGCTAGAAGTTGATATTTTTTT-ACAAGACGGAGGATGTACTGTTGCAT 98 consensus_7975#0 ATAAAGTACATAGCTAGAAGTTGATATTTTTTTTACAAGACGGAGGATGTAC-GTTGCAT 239 ********************************* ****************** ******* consensus_7975#1 GAGGGATGTGACTGAGTCTCCCATAGCTGGTTAT--TTTGTGGGCCGAGCCAGATTCC-C 226 consensus_7975#2 GAGGGATGTGACTGAGTCTCCCATAGCTGGTTATTATTTGTGGGCCGAGCCAGATTCCGC 158 consensus_7975#0 GAGGGATGTGACTGAGTCTCCCATAGCTGGTTAT--TTTGTGGGCCGAGCCAGATTCC-C 296 ********************************** ********************** * consensus_7975#1 CAAAGAGAAGGCCCGGTTCGTTTCTTGGTTGGCCCTTGTGGCCCAA-GAACAGCCTGG-- 283 consensus_7975#2 CAAAGAGAATGGCCGGTTCGTTTCTTGGTTGGCCCTTGTGGCCCAATGAACAGCCTGTGT 218 consensus_7975#0 CAAAGAGAAGGCCCGGTTCGTTTCTTGGTTGGCCCTTGTGGCCCAA-GAACAGCCTGG-- 353 ********* * ********************************** ********** consensus_7975#1 TAATGTAACA-AGACGTTTGCTC--TAACCACACC---ATGTCCACGGGAAAAGTACATC 337 consensus_7975#2 CAATGTAACAGAGACGTTTGCGTCGTAACCGNAACCCAGTGGTCCCACGTGGAACACAT- 277 consensus_7975#0 TAATGTAACA-AGACGTTTGCTC--TAACCACACC---ATGTCCACGGGAAAAGTACATC 407 ********* ********** ***** * * ** * * * * **** consensus_7975#1 GATATGTACAGCATGTACAGTTAATATGAGGAACTTTCACCAGCGTTGCTGTATATATGG 397 consensus_7975#2 -GTACATCGATCATGTACC----------------------------------------- 295 consensus_7975#0 GATATGTACAGCATGTACAGTTAATATGAGGAACTTTCNACNGCGTTGCTGTATATATGG 467 ** * * ******* consensus_7975#1 CCCCAATTCTGAGACTGAGCTTGAAATCATGTGTCCCCTGCAGGTTCAAGCAGTGAAAAG 457 consensus_7975#2 ------------------------------------------------------------ consensus_7975#0 TCCCAATTCTGAGACTGAGCTTGAAATCATGTGTCCCCTGCAGGTTCAAGCAGTGAAAAG 527 consensus_7975#1 TCATAGAGATTTGCACTTCTCGATAAGATGCGACCCGTGCAGGCAAGACGTGCGTGAGAT 517 consensus_7975#2 ------------------------------------------------------------ consensus_7975#0 TCATAGAGATTTGTACTTCTCGATAAGATGCGACGCGTGCAGGCGAGACGTGGGTGTGAT 587 consensus_7975#1 GGTGCCCCCCAGGGTTCCGGAGGTACCAAATTCTGCTAAGGTGGAGGGGTCGAAGGAACC 577 consensus_7975#2 ------------------------------------------------------------ consensus_7975#0 GGTGCACCCCAGG-TTCCGGAGGTACGATAT-CTGCTTAGGTGTAGGT-TCTGAGGAACC 644 consensus_7975#1 CATGCAGTTTTCTATTCCCCCGCTTTTTGGAAAGGGTCCTGGTTTCTCTATAAAAAAAAG 637 consensus_7975#2 ------------------------------------------------------------ consensus_7975#0 CATGGAGTTCTCTAT--CCTCTGCTTTTGGAAATGTTCCTGTCTCTCTCTCATCAAA--- 699 consensus_7975#1 GGGTCCCCTTTGGCTTGTGCCCTGGGCAACAAGCCTTAT 676 consensus_7975#2 --------------------------------------- consensus_7975#0 --------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||