|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7982#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1303 fasta sequence
[ACCGAGGAGGCGGTCGCCTTCGCGCGGGACGCCGCCACGCGGCCCGAGCTCTGGCTCGACTTCCCCCTCCTCCCCGACGACGACGACGATTTCGACATGACCGACGCGCAGCAGGACCACGCGCTCGCCGTCGAGAGCGTGGCGCCGGAGCTGGCCGATCTGCGGATCGAGCTCTGCCCGAGCCACATGAGCGAGGGATGCTTCTGGAAGATCTACTTCGTGCTGCTCCATCCCAAGCTCAGCAAGGACGACGCCGACCTCCTCTCCACCCCACAGATTTTGGAAGCTAGAAAGAAGCTATCACGCAATTTGCAATCTGAGTCAAAGCCAGACAGCAACGAAGACATGGTAGCTGCTTCTTCCAGTAATATAGATGGTAATGTGCCTTCTCCTGTAGAGGTTGTGGGCATATTAAAGAATGAAGATGATTCTGCAAGGGCCACATCCTTCAGCAACGTCAACTATGGCGCGCCTCAACCAGTAATTCTGGAAATGCAATCAGATGATACACTCAATGACTCTGGAGGTCTTCGCGCAGATGACATCACCAGCAGTGTACCTGTACAACTTGTGCCAGTATTGAAAGATGCTACTGAGTTCTCACAAGCCAGGATGGAAGAAAGGATCCAAGATTTCACTGCACAAGATACAGTAGCAAATGAAGAGCCTGGACAGTTGTCTGGGATAAAACTAGAGGATAATTCTGAAGAACGACAGAAACAGCCATCGACCACTAACCTCAGTGAGCAATCAAGAGTTGCCATTCAGAAGAACAGTAACGATGACGATGATGATGACGAGGATGAATGGTTGGAAGAGGAGGAGACTGGTGGTGCAGGGAACACGATGATTCCAATAGCAGATGATGAAGACGTGTCTTTTAGTGATCTGGAGGAAGATGATGCCACAGCGTGACAACGTTAGCTGGTTTGGATACTCTAGCTTCCTGCATCTGATGTTCTGGTTCCATGACACGGCAAAATACAATGGGCTTGGCTGAGTTTTCGACTACATGCTGCTGTTGCAAAATTTACCTCCTCTCTTCTCTGTACGAAGTGAATGCAAATATCAGCTTTGCAACTTGCTATGCAAGACCCCATTTTCTTCTCTTTTTTTGGGGAAGTTACTGAAGTGAGCCAGCTAGTGGTGTGATTAGCAGTTGTACAGTGTGTAGAGACTAGATCATCTGAGGAATTTGATCAATATTATCTGATTCCTCCAACGTGTATCAAAATGATGAAATTCAATTCGTCCTCTTTCAGTGAAAGAAATATACAGTCCATGTTTATATTATAAAAAAAGA]
[+] EMBL AK120782 [ACCGAGGAGGCGGTCGCCTTCGCGCGGGACGCCGCCACGCGGCCCGAGCTCTGGCTCGACTTCCCCCTCCTCCCCGACGACGACGACGATTTCGACATGACCGACGCGCAGCAGGACCACGCGCTCGCCGTCGAGAGCGTGGCGCCGGAGCTGGCCGATCTGCGGATCGAGCTCTGCCCGAGCCACATGAGCGAGGGATGCTTCTGGAAGATCTACTTCGTGCTGCTCCATCCCAAGCTCAGCAAGGACGACGCCGACCTCCTCTCCACCCCACAGATTTTGGAAGCTAGAAAGAAGCTATCACGCAATTTGCAATCTGAGTCAAAGCCAGACAGCAACGAAGACATGGTAGCTGCTTCTTCCAGTAATATAGATGGTAATGTGCCTTCTCCTGTAGAGGTTGTGGGCATATTAAAGAATGAAGATGATTCTGCAAGGGCCACATCCTTCAGCAACGTCAACTATGGCGCGCCTCAACCAGTAATTCTGGAAATGCAATCAGATGATACACTCAATGACTCTGGAGGTCTTCGCGCAGATGACATCACCAGCAGTGTACCTGTACAACTTGTGCCAGTATTGAAAGATGCTACTGAGTTCTCACAAGCCAGGATGGAAGAAAGGATCCAAGATTTCACTGCACAAGATACAGTAGCAAATGAAGAGCCTGGACAGTTGTCTGGGATAAAACTAGAGGATAATTCTGAAGAACGACAGAAACAGCCATCGACCACTAACCTCAGTGAGCAATCAAGAGTTGCCATTCAGAAGAACAGTAACGATGACGATGATGATGACGAGGATGAATGGTTGGAAGAGGAGGAGACTGGTGGTGCAGGGAACACGATGATTCCAATAGCAGATGATGAAGACGTGTCTTTTAGTGATCTGGAGGAAGATGATGCCACAGCGTGACAACGTTAGCTGGTTTGGATACTCTAGCTTCCTGCATCTGATGTTCTGGTTCCATGACACGGCAAAATACAATGGGCTTGGCTGAGTTTTCGACTACATGCTGCTGTTGCAAAATTTACCTCCTCTCTTCTCTGTACGAAGTGAATGCAAATATCAGCTTTGCAACTTGCTATGCAAGACCCCATTTTCTTCTCTTTTTTTGGGGAAGTTACTGAAGTGAGCCAGCTAGTGGTGTGATTAGCAGTTGTACAGTGTGTAGAGACTAGATCATCTGAGGAATTTGATCAATATTATCTGATTCCTCCAACGTGTATCAAAATGATGAAATTCAATTCGTCCTCTTTCAGTGAAAGAAATATACAGTCCATGTTTATATTAT ]
[-] EMBL CB657855 [ atTATGGCGCGCCTCAACCAGTAATTCTGGAAATGCAATCAGATGATACACTCAATGACTCTGGAGGTCTTCGCGCAGATGACATCACCAGCAGTGTACCTGTACAACTTGTGCCAGTATTGAAAGATGCTACTGAGTTCTCACAAGCCAGGATGGAAGAAAGGATCCAAGATTTCACTGCACAAGATACAGTAGCAAATGAAGAGCCTGGACAGTTGTCTGGGATAAAACTAGAGGATAATTCTGAAGAACGACAGAAACAGCCATCGACCACTAACCTCAGTGAGCAATCAAGAGTTGCCATTCAGAAGAACAGTAACGATGACGATGATGATGACGAGGATGAATGGTTGGAAGAGGAGGAGACTGGTGGTGCAGGAAACACGATGATTCCAATAGCAGATGATGAAGACGTGTCTTTTAGTGATCTGGAGGAAGATGATGCCACAGCGTGACAACGTTAGCTGGTTTGGATACTCTAGCTTCCTGCATCTGATGTTCTGGTTCCATGACACGGCAAAATACAATGGGCTTGGCTGAGTTTTCGACTACATGCTGCTGTTGCAAAATTTACCTCCTCTCTTCTCTGTACGAAGTGAATGCAAATATCAGCTTTGCAACTTGCTATGCAAGACCCCATTTTCTTCTCTTTTTTTGGGGAAGTTACTGAAGTGAGCCAGCTAGTGGTGTGATTAGCAGTTGTACAGTGTGTAGAGACTAGATCATCTGAGGAATTTGATCAATATTATCTGATTCCTCCAACGTGTATCAAAATGATGAAATTCAATTCGTCCTCTTTCAGTGAAAGAAATATACAGTCCATGTTTATATTAAAAAAAAAGA]
[-] EMBL CB678021 [ ATACACTCAATGACTCTGGAGGTCTTGGCGCAGATGACATCACCAGCAGTGTACCTGTACAACTTGTGCCAGTATTGAAAGATGCTACTGAGTTCTCACAAGCCAGGATGGAAGAAAGGATCCAAGATTTCACTGCACAAGATACAGTAGCAAATGAAGAGCCTGGACAGTTGTCTGGGATAAAACTAGAGGATAATTCTGAAGAACGACAGAAACAGCCATCGACCACTAACCTCAGTGAGCAATCAAGAGTTGCCATTCAGAAGAACAGTAACGATGACGATGATGATGACGAGGATGAATGGTTGGAAGAGGAGGAGACTGGTGGTGCAGGGAACACGATGATTCCAATAGCAGATGATGAAGACGTGTCTTTTAGTGATCTGGAGGAAGATGATGCCACAGCGTGACAACGTTAGCTGGTTTGGATACTCTAGCTTCCTGCATCTGATGTTCTGGTTCCATGACACGGCAAAATACAATGGGCTTGGCTGAGTTTTCGACTACATGCTGCTGTTGCAAAATTTACCTCCTCTCTTCTCTGTACGAAGTGAATGCAAATATCAGCTTTGCAACTTGCTATGCAAGACCCCATTTTCTTCTCTTTTTTTGGGGAAGTTACTGAAGTGAGCCAGCTAGTGGTGTGATTAGCAGTTGTACAGTGTGTAGAGACTAGATCATCTGAGGAATTTGATCAATATTATCTGATTCCTCCAACGTATATCAAAATGATGAAATTCAATTCGTCCTCTTTCA ]
consensusID : consensus_7982#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 879 fasta sequence
[ACCGAGGAGGCGGTCGCCTTCGCGCGGGACGCCGCCACGCGGCCCGAGCTCTGGCTCGACTTTCCCCTCCTCCCCGACGACGACGACGATTTCGACATGACCGACGCGCAGCAGGACCACGCGCTCGCCGTCGAGAGCGTGGCGCCGGAGCTGGCCGATCTGCGGATCGAGCTCTGCCCGAGCCACATGAGCGAGGGATGCTTCTGGAAGATCTACTTCGTGCTGCTCCATCCCAAGCTCAGCAAGGACGACGCCGACCTCCTCTCCACCCCACAGATTTTGGAAGCTAGAAAGAAGCTATCACACAATTTGCAATCTGAGTCAAAGCCAGACAGCAACGAAGACATGGTAGCTGCTTCTTCCAGTAATATAGATGGTAATGTGCCTTCTCCTGTAGAGGTTGTGGGCATATTAAAGAATGAAGATGAATCTGCAAGGGCCGAATCCTTCAACAACNTCAACTTTTTGCTCACCTTAACCAGGAATTTTGGAAATGCAATGGGATGATACACTTCATGACTCTGGAGGTCTTGGGGCAGATGACATCACCAGGTAGGGCCTTGACAAATTTTGCCAAGATTCGAAGAGGTCACTGGTGTGCGAAGACCGCGGTGGAAGAAATATACGGGGATGCAGGGGCAGTGCATGAGAGACAGATGCCGCAGGCGGACGTGGATGCAGGAGGCGAATCATATTGTGTATGGCGTGTAAGAAGGGGTGGATTAGCATGAGCGAGAACACAATGGAGTCATTAGCTCATAAAGAAAGATTGGAGAATTGAATAGGAAACATTAAGAAAAAGAGCACTGGTAGGGTTGAATATAATGCAGATATTTAGTTGATGAAATGTGTCACGTGTTAGCAGTAAATATTAGGCCG]
[+] EMBL BE039827 [ACCGAGGAGGCGGTCGCCTTCGCGCGGGACGCCGCCACGCGGCCCGAGCTCTGGCTCGACTTTCCCCTCCTCCCCGACGACGACGACGATTTCGACATGACCGACGCGCAGCAGGACCACGCGCTCGCCGTCGAGAGCGTGGCGCCGGAGCTGGCCGATCTGCGGATCGAGCTCTGCCCGAGCCACATGAGCGAGGGATGCTTCTGGAAGATCTACTTCGTGCTGCTCCATCCCAAGCTCAGCAAGGACGACGCCGACCTCCTCTCCACCCCACAGATTTTGGAAGCTAGAAAGAAGCTATCACACAATTTGCAATCTGAGTCAAAGCCAGACAGCAACGAAGACATGGTAGCTGCTTCTTCCAGTAATATAGATGGTAATGTGCCTTCTCCTGTAGAGGTTGTGGGCATATTAAAGAATGAAGATGAATCTGCAAGGGCCGAATCCTTCAACAACNTCAACTTTTTGCTCACCTTAACCAGGAATTTTGGAAATGCAATGGGATGATACACTTCATGACTCTGGAGGTCTTGGGGCAGATGACATCACCAGGTAGGGCCTTGACAAATTTTGCCAAGATTCGAAGAGGTCACTGGTGTGCGAAGACCGCGGTGGAAGAAATATACGGGGATGCAGGGGCAGTGCATGAGAGACAGATGCCGCAGGCGGACGTGGATGCAGGAGGCGAATCATATTGTGTATGGCGTGTAAGAAGGGGTGGATTAGCATGAGCGAGAACACAATGGAGTCATTAGCTCATAAAGAAAGATTGGAGAATTGAATAGGAAACATTAAGAAAAAGAGCACTGGTAGGGTTGAATATAATGCAGATATTTAGTTGATGAAATGTGTCACGTGTTAGCAGTAAATATTAGGCCG]
consensusID : consensus_7982#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 159 fasta sequence
[ACGACAGCAGGACCACTGAAGCATCGCCGTCGAGAAGCAGTAGCAGTCACTAGGAAGACTGGCCGATCTGCGGTCGAGCTCTGCCCGAGACACATGAGCGAGGGATGACTTCTGGAAGATCTACATTCAGGCTGCTCCATCCAAGCTCAGCAAGGCAGA]
[+] EMBL AF093588 [ACGACAGCAGGACCACTGAAGCATCGCCGTCGAGAAGCAGTAGCAGTCACTAGGAAGACTGGCCGATCTGCGGTCGAGCTCTGCCCGAGACACATGAGCGAGGGATGACTTCTGGAAGATCTACATTCAGGCTGCTCCATCCAAGCTCAGCAAGGCAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7982#1 ACCGAGGAGGCGGTCGCCTTCGCGCGGGACGCCGCCACGCGGCCCGAGCTCTGGCTCGAC 60
consensus_7982#2 ------------------------------------------------------------
consensus_7982#0 ACCGAGGAGGCGGTCGCCTTCGCGCGGGACGCCGCCACGCGGCCCGAGCTCTGGCTCGAC 60
consensus_7982#1 TTTCCCCTCCTCCCCGACGACGACGACGATTTCGACATGACCGACGCGCAGCAGGACCAC 120
consensus_7982#2 -------------ACGACAGCAG-GACCACTGAAGCATCGCCGTCGAGAAGCAGTA---- 42
consensus_7982#0 TTCCCCCTCCTCCCCGACGACGACGACGATTTCGACATGACCGACGCGCAGCAGGACCAC 120
**** * *** * * *** *** ** * ***** *
consensus_7982#1 GCGCTCGCCGTCGAGAGCGTGGCGCCGGAGCTGGCCGATCTGCGGATCGAGCTCTGCCCG 180
consensus_7982#2 GCAGTCACTAGGAAGA--------------CTGGCCGATCTGCGG-TCGAGCTCTGCCCG 87
consensus_7982#0 GCGCTCGCCGTCGAGAGCGTGGCGCCGGAGCTGGCCGATCTGCGGATCGAGCTCTGCCCG 180
** ** * *** *************** **************
consensus_7982#1 AGCCACATGAGCGAGGGATG-CTTCTGGAAGATCTAC-TTCGTGCTGCTCCATCCCAAGC 238
consensus_7982#2 AGACACATGAGCGAGGGATGACTTCTGGAAGATCTACATTCAGGCTGCTCCATCC-AAGC 146
consensus_7982#0 AGCCACATGAGCGAGGGATG-CTTCTGGAAGATCTAC-TTCGTGCTGCTCCATCCCAAGC 238
** ***************** **************** *** ************ ****
consensus_7982#1 TCAGCAAGGACGACGCCGACCTCCTCTCCACCCCACAGATTTTGGAAGCTAGAAAGAAGC 298
consensus_7982#2 TCAGCAAGGCAGA----------------------------------------------- 159
consensus_7982#0 TCAGCAAGGACGACGCCGACCTCCTCTCCACCCCACAGATTTTGGAAGCTAGAAAGAAGC 298
********* **
consensus_7982#1 TATCACACAATTTGCAATCTGAGTCAAAGCCAGACAGCAACGAAGACATGGTAGCTGCTT 358
consensus_7982#2 ------------------------------------------------------------
consensus_7982#0 TATCACGCAATTTGCAATCTGAGTCAAAGCCAGACAGCAACGAAGACATGGTAGCTGCTT 358
consensus_7982#1 CTTCCAGTAATATAGATGGTAATGTGCCTTCTCCTGTAGAGGTTGTGGGCATATTAAAGA 418
consensus_7982#2 ------------------------------------------------------------
consensus_7982#0 CTTCCAGTAATATAGATGGTAATGTGCCTTCTCCTGTAGAGGTTGTGGGCATATTAAAGA 418
consensus_7982#1 ATGAAGATGAATCTGCAAGGGCCGAATCCTTCAACAACNTCAACTTTTTGCTCACCTTAA 478
consensus_7982#2 ------------------------------------------------------------
consensus_7982#0 ATGAAGATGATTCTGCAAGGGCCACATCCTTCAGCAACGTCAACTATG-GCGCGCCTCAA 477
consensus_7982#1 CCAGGAATTTTGGAAATGCAATGGGATGATACACTTCATGACTCTGGAGGTCTTGGGGCA 538
consensus_7982#2 ------------------------------------------------------------
consensus_7982#0 CCAGTAATTCTGGAAATGCAATCAGATGATACACTCAATGACTCTGGAGGTCTTCGCGCA 537
consensus_7982#1 GATGACATCACCAGGTAGGGCCTTG-ACAAATTTTGCCAAGATTCGAAGAGGTCACTG-G 596
consensus_7982#2 ------------------------------------------------------------
consensus_7982#0 GATGACATCACCAGCAGTGTACCTGTACAACTTGTGCCAGTATTGAAAGATGCTACTGAG 597
consensus_7982#1 TGTGCGAAGACCGCGGTGGAAGAAATATACGGGGATGCAGGGGCAGTGCATG-AGAGACA 655
consensus_7982#2 ------------------------------------------------------------
consensus_7982#0 TTCTCACAAGCCAGGATGGAAGAAAGGATCCAAGATTTCACTGCACAAGATACAGTAGCA 657
consensus_7982#1 GATGCCGCAGGCGGACGT-------GGATGCAGGAGGCGAATCATATTGTGTATGGCGTG 708
consensus_7982#2 ------------------------------------------------------------
consensus_7982#0 AATGAAGAGCCTGGACAGTTGTCTGGGATAAAACTAGAGGATAATTCTGAAGAACGACAG 717
consensus_7982#1 TAAGAAGGGGTGG--ATTAGCATGAGCGAGAACACAATGG-----AGTCATTAGCTCATA 761
consensus_7982#2 ------------------------------------------------------------
consensus_7982#0 AAACAGCCATCGACCACTAACCTCAGTGAGCAATCAAGAGTTGCCATTCAGAAGAACAGT 777
consensus_7982#1 AAGAAAGATTGGAGAATTGAATAGGA--AACATTAAGAAAAAGAGCA--CTGGTAGGGTT 817
consensus_7982#2 ------------------------------------------------------------
consensus_7982#0 AACGATGACGATGATGATGACGAGGATGAATGGTTGGAAGAGGAGGAGACTGGTGGTGCA 837
consensus_7982#1 G--AATATAATGCAGATATT--TAGTTGATGAA-ATGTGTCACGTGTTAGC---AGTAAA 869
consensus_7982#2 ------------------------------------------------------------
consensus_7982#0 GGGAACACGATGATTCCAATAGCAGATGATGAAGACGTGTCTTTTAGTGATCTGGAGGAA 897
consensus_7982#1 TATTAGGCCG-------------------------------------------------- 879
consensus_7982#2 ------------------------------------------------------------
consensus_7982#0 GATGATGCCACAGCGTGACAACGTTAGCTGGTTTGGATACTCTAGCTTCCTGCATCTGAT 957
consensus_7982#1 ------------------------------------------------------------
consensus_7982#2 ------------------------------------------------------------
consensus_7982#0 GTTCTGGTTCCATGACACGGCAAAATACAATGGGCTTGGCTGAGTTTTCGACTACATGCT 1017
consensus_7982#1 ------------------------------------------------------------
consensus_7982#2 ------------------------------------------------------------
consensus_7982#0 GCTGTTGCAAAATTTACCTCCTCTCTTCTCTGTACGAAGTGAATGCAAATATCAGCTTTG 1077
consensus_7982#1 ------------------------------------------------------------
consensus_7982#2 ------------------------------------------------------------
consensus_7982#0 CAACTTGCTATGCAAGACCCCATTTTCTTCTCTTTTTTTGGGGAAGTTACTGAAGTGAGC 1137
consensus_7982#1 ------------------------------------------------------------
consensus_7982#2 ------------------------------------------------------------
consensus_7982#0 CAGCTAGTGGTGTGATTAGCAGTTGTACAGTGTGTAGAGACTAGATCATCTGAGGAATTT 1197
consensus_7982#1 ------------------------------------------------------------
consensus_7982#2 ------------------------------------------------------------
consensus_7982#0 GATCAATATTATCTGATTCCTCCAACGTGTATCAAAATGATGAAATTCAATTCGTCCTCT 1257
consensus_7982#1 ----------------------------------------------
consensus_7982#2 ----------------------------------------------
consensus_7982#0 TTCAGTGAAAGAAATATACAGTCCATGTTTATATTATAAAAAAAGA 1303
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||