|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7983#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1206 fasta sequence
[AAAGCGGACAGCCACACACCCCTCACAGGCGAGCTCGGTCGGAGCGGCGGCGGCGGCGGCGGCGAACCGACCCTACCTTGCCGGCGGCGAGCGGCGGCGGCGGATGGGCATGGAGGCGAGGAGGAAGATGAGGTTCGCGATGGTGTGCTCGTCGAACATGAACCGGAGCATGGAGGCGCACTCGCTGCTCGGCCGCGCGGGGCTCGACGTCGCCTCCTACGGCACCGGCACCCACGTCAAGCTCCCCGGCCCTTCCCTCCACGAGCCCAACGTCTACGACTTCGGCACCCCCTACAACGTCATCTACGACGACCTCCGCCGCAAGGACCCCGACCTGTACAAGAGGAACGGCCTGCTGCCAATGCTGAAGAGGAACACCTCAGTCAAGCTGGCGCCGCAGAGGTGGCAGGACAATGCCGGCGATGGGCTGTTTGATGTGATATTCAGCTTTGAGGAGAGGGTCTTCGACTTAATCGTCGATGATATGCATAACCGTGAGCAAAGGATGCTAAAGAACGCGCTGATAATCAATATGGATGTGAAAGATAACCATGAAGAAGCTGGTGTTGGTGCAAAGCTTGCTTTAGATTTGTGTCAGAAGCTTGAAGGGGCAGATGAAGATTGGGAGGAAATTATTGATGACCTGATTATTACATTTGAGAAGCAGCACAAGCGGAAGCTCACATACAACATGGCATTTTACTAACTTCTGTAGTTCATCGTGCGGATTATACAGAGGCAGCAGAATCATTCTTAAATTAACTCGATCGTGTGGATGGCTGGTAGCTTGGCATGCAGGGAAATGTACAAAAACTGAGGTACCAACTGGATCCAAGTGTGGTTCCTGTTCCATGCCAACAAATGGGGGAAGATGTGTGAAACTTGATTAAAGAAAATATGTTCTGCGTTGAGTCGCTCGATTGTTGTTAGAGGATAATTGGATATTCAGATGTTGATCTTGAAGCTACCCATCATCTCAAAACCATGCAGCACCGAATGTTACTCATTTGCTTTAGTGGCTGCCTAAAATTCATGGTGAGCCTGATGAATGGTACAGTACATGTTAATGAATTGGCCTATCAGTACAGTACAGTAAGATTCAGAAGGTGAACGAGGCAGACAGTGACCAAAACCATGAATTTCAGTGGTGATGGCTTTCAA-AATATAG-CTAGAAATGCATTTATATTTTTCTCCAACAAAAAAGGA]
[+] EMBL AK069543 [AAAGCGGACAGCCACACACCCCTCACAGGCGAGCTCGGTCGGAGCGGCGGCGGCGGCGGCGGCGAACCGACCCTACCTTGCCGGCGGCGAGCGGCGGCGGCGGATGGGCATGGAGGCGAGGAGGAAGATGAGGTTCGCGATGGTGTGCTCGTCGAACATGAACCGGAGCATGGAGGCGCACTCGCTGCTCGGCCGCGCGGGGCTCGACGTCGCCTCCTACGGCACCGGCACCCACGTCAAGCTCCCCGGCCCTTCCCTCCACGAGCCCAACGTCTACGACTTCGGCACCCCCTACAACGTCATCTACGACGACCTCCGCCGCAAGGACCCCGACCTGTACAAGAGGAACGGCCTGCTGCCAATGCTGAAGAGGAACACCTCAGTCAAGCTGGCGCCGCAGAGGTGGCAGGACAATGCCGGCGATGGGCTGTTTGATGTGATATTCAGCTTTGAGGAGAGGGTCTTCGACTTAATCGTCGATGATATGCATAACCGTGAGCAAAGGATGCTAAAGAACGCGCTGATAATCAATATGGATGTGAAAGATAACCATGAAGAAGCTGGTGTTGGTGCAAAGCTTGCTTTAGATTTGTGTCAGAAGCTTGAAGGGGCAGATGAAGATTGGGAGGAAATTATTGATGACCTGATTATTACATTTGAGAAGCAGCACAAGCGGAAGCTCACATACAACATGGCATTTTACTAACTTCTGTAGTTCATCGTGCGGATTATACAGAGGCAGCAGAATCATTCTTAAATTAACTCGATCGTGTGGATGGCTGGTAGCTTGGCATGCAGGGAAATGTACAAAAACTGAGGTACCAACTGGATCCAAGTGTGGTTCCTGTTCCATGCCAACAAATGGGGGAAGATGTGTGAAACTTGATTAAAGAAAATATGTTCTGCGTTGAGTCGCTCGATTGTTGTTAGAGGATAATTGGATATTCAGATGTTGATCTTGAAGCTACCCATCATCTCAAAACCATGCAGCACCGAATGTTACTCATTTGCTTTAGTGGCTGCCTAAAATTCATGGTGAGCCTGATGAATGGTACAGTACATGTTAATGAATTGGCCTATCAGTACAGTACAGTAAGATTCAGAAGGTGAACGAGGCAGACAGTGACCAAAACCATGAATTTCAGTGGTGATGGCTTTCAA AATATAG CTAGAAATGCAT ]
[+] EMBL AU095041 [ anGCCACACACCCCTCACAGGCGAGCTCGGTCGGAGCGGCGGCGGCGGCGGCGGCGAACCGACCCTACCTTGCCGGCGGCGAGCGGCGGCGGCGGATGGGCATGGAGGCGAGGAGGAAGATGAGGTTCGCGATGGTGTGCTCGTCGAACATGAACCGGAGCATTGAGGCGCACTCGCTGCTCGGCCGCGCGGGGCTCGACGTCGCCTCCTACGGCACCGGCACCCACGTCAAGCTCCCCGGCCCTTCCCTCCACGAGCCCAACGTCTACGACTTCGG AACCCCTACAACGTCATCTACGACGACCTCCGCCGCAAGGACCCCGACCTGTACAAGAGG ACGGCCTGCTG CAATGCTGAAGAGG ACA CTCA TCAAG TGGCG CG A AAGTGG AAGACAATGCC GC AT GGNTGTTT ]
[+] EMBL CB680727 [ ACCCCTCACTGGCGAGCTCGGTCGGAGCGGCGGCGGCGGCGGCGGCGAACCGACCCTACCTTGCCGGCGGCGAGCGGCGGCGGCGGATGGGCATGGAGGCGAGGAGGAAGATGAGGTTCGCGATGGTGTGCTCGTCGAACATGAACCGGAGCATGGAGGCGCACTCGCTGCTCGGCCGCGCGGGGCTCGACGTCGCCTCCTACGGCACCGGCACCCACGTCAAGCTCCCCGGCCCTTCCCTCCACGAGCCCAACGTCTACGACTTCGGCACCCCCTACAACGTCATCTACGACGACCTCCGCCGCAAGGACCCCGACCTGTACAAGAGGAACGGCCTGCTGCCAATGCTGAAGAGGAACACCTCAGTCAAGCTGGCGCCGCAGAGGTGGCAGGACAATGCCGGCGATGGGCTGTTTGATGTGATATTCAGCTTTGAGGAGAGGGTCTTCGACTTAATCGTCGATGATATGCATAACCGTGAGCAAAGGATGCTAAAGAACGCGCTGATAATCAATATGGATGTGAAAGATAACCATGAAGAAGCTGGTGTTGGTGCAAAGCTTGCTTTAGATTTGTGTCAGAAGCTTGAAGGGGCAGATGAAGATTGGGAGGAAATTATTGATGACCTGATTATTACATTTGAGAAGCAGCACAAGCGGAAGCTCACATACAACATGGCATTTTACTAACTTCTGTAGTTCATCGTGCGGATTATACAGAGGC ]
[-] EMBL CB680728 [ TCTTCGACTTAATCGTCGATGATATGCATAACCGTGAGCAAAGGATGCTAAAGAACGCGCTGATAATCAATATGGATGTGAAAGATAACCATGAAGAAGCTGGTGTTGGTGCAAAGCTTGCTTTAGATTTGTGTCAGAAGCTTGAAGGGGCAGATGAAGATTGGGAGGAAATTATTGATGACCTGATTATTACATTTGAGAAGCAGCACAAGCGGAAGCTCACATACAACATGGCATTTTACTAACTTCTGTAGTTCATCGTGCGGATTATACAGAGGCAGCAGAATCATTCTTAAATTAACTCGATCGTGTGGATGGCTGGTAGCTTGGCATGCAGGGAAATGTACAAAAATTGAGGTACCAACTGGATCCAAGTGTGGTTCCTGTTCCATGCCAACAAATGGGGGAAGATGTGTGAAACTTGATTAAAGAAAATATGTTCTGCTTTGAGTCGCTCGATTGTTGTTAGAGGATAATTGGATATTCAGATGTTGATCTTGAAGCTACCCATCATCTCAAAACCATGCAGCACCGAATGTTACTCATTTGCTTTAGTGGCTGCCTAAAATTCATGGTGAGCCTGATGAATGGTACAGTACATGTTAATGAATTGGCCTATCAGTACAGTACAGTAAGATTCAGAAGGTGAACGAGGCAGACAGTGACCAAAACCATGAATTTCAGTGGTGATGGCTTTCAAGGGTATAGTCTAGAAATGCCATTATATTTTTCTCCAACAAAAAAGGA]
consensusID : consensus_7983#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 580 fasta sequence
[AGAAGCTGGTGTTGGTGCANNGCTTGCTTTAGATTTGTGTCAGAAGCTTGAAGGGGCAGATGAAGATTGGGAGGAAATTATTGATGACCTGATTATTACATTTGAGAAGCNGCACAAGCGGAAGCTCACATACAACATGGCATTTTACTAACTTCTGTAGTTCATNGTGCGGATTATACAGAGGCAGCAGAATCATTCTTAAATTAACTCGATCGTGTGGATGGCTGGTAGCTTGGCATNCAGGGAAATGTACAAAAACTGAGGTNCCAACTGGATCCAAGTGTGGTTCCTGTTCCATGCCAACAAATGGGGGAAGATGTGTGAAACTTGATTAAAGAAAATATGTTCTGCGTTGAGTCGCTCGATTGTTGTTAGAGGATAATTGGATATTCAGATGTTGATCTTGAAGCTACCCATCATCTCAAAACCATGCAGCACCGAATGTTACTCATTTGCTTTAGTGGCTGCCTAAAATTCATGGTGAGCCTGATGAATGGTACAGTACATGTTAATGAATTGGCCTATCAGTACAGTACAGTAAGATTCAGNNGGTGAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU030263 [AGAAGCTGGTGTTGGTGCANNGCTTGCTTTAGATTTGTGTCAGAAGCTTGAAGGGGCAGATGAAGATTGGGAGGAAATTATTGATGACCTGATTATTACATTTGAGAAGCNGCACAAGCGGAAGCTCACATACAACATGGCATTTTACTAACTTCTGTAGTTCATNGTGCGGATTATACAGAGGCAGCAGAATCATTCTTAAATTAACTCGATCGTGTGGATGGCTGGTAGCTTGGCATNCAGGGAAATGTACAAAAACTGAGGTNCCAACTGGATCCAAGTGTGGTTCCTGTTCCATGCCAACAAATGGGGGAAGATGTGTGAAACTTGATTAAAGAAAATATGTTCTGCGTTGAGTCGCTCGATTGTTGTTAGAGGATAATTGGATATTCAGATGTTGATCTTGAAGCTACCCATCATCTCAAAACCATGCAGCACCGAATGTTACTCATTTGCTTTAGTGGCTGCCTAAAATTCATGGTGAGCCTGATGAATGGTACAGTACATGTTAATGAATTGGCCTATCAGTACAGTACAGTAAGATTCAGNNGGTGAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7983#0 AAAGCGGACAGCCACACACCCCTCACAGGCGAGCTCGGTCGGAGCGGCGGCGGCGGCGGC 60
consensus_7983#1 ------------------------------------------------------------
consensus_7983#0 GGCGAACCGACCCTACCTTGCCGGCGGCGAGCGGCGGCGGCGGATGGGCATGGAGGCGAG 120
consensus_7983#1 ------------------------------------------------------------
consensus_7983#0 GAGGAAGATGAGGTTCGCGATGGTGTGCTCGTCGAACATGAACCGGAGCATGGAGGCGCA 180
consensus_7983#1 ------------------------------------------------------------
consensus_7983#0 CTCGCTGCTCGGCCGCGCGGGGCTCGACGTCGCCTCCTACGGCACCGGCACCCACGTCAA 240
consensus_7983#1 ------------------------------------------------------------
consensus_7983#0 GCTCCCCGGCCCTTCCCTCCACGAGCCCAACGTCTACGACTTCGGCACCCCCTACAACGT 300
consensus_7983#1 ------------------------------------------------------------
consensus_7983#0 CATCTACGACGACCTCCGCCGCAAGGACCCCGACCTGTACAAGAGGAACGGCCTGCTGCC 360
consensus_7983#1 ------------------------------------------------------------
consensus_7983#0 AATGCTGAAGAGGAACACCTCAGTCAAGCTGGCGCCGCAGAGGTGGCAGGACAATGCCGG 420
consensus_7983#1 ------------------------------------------------------------
consensus_7983#0 CGATGGGCTGTTTGATGTGATATTCAGCTTTGAGGAGAGGGTCTTCGACTTAATCGTCGA 480
consensus_7983#1 ------------------------------------------------------------
consensus_7983#0 TGATATGCATAACCGTGAGCAAAGGATGCTAAAGAACGCGCTGATAATCAATATGGATGT 540
consensus_7983#1 ------------------------------------------------------------
consensus_7983#0 GAAAGATAACCATGAAGAAGCTGGTGTTGGTGCAAAGCTTGCTTTAGATTTGTGTCAGAA 600
consensus_7983#1 ---------------AGAAGCTGGTGTTGGTGCANNGCTTGCTTTAGATTTGTGTCAGAA 45
******************* ************************
consensus_7983#0 GCTTGAAGGGGCAGATGAAGATTGGGAGGAAATTATTGATGACCTGATTATTACATTTGA 660
consensus_7983#1 GCTTGAAGGGGCAGATGAAGATTGGGAGGAAATTATTGATGACCTGATTATTACATTTGA 105
************************************************************
consensus_7983#0 GAAGCAGCACAAGCGGAAGCTCACATACAACATGGCATTTTACTAACTTCTGTAGTTCAT 720
consensus_7983#1 GAAGCNGCACAAGCGGAAGCTCACATACAACATGGCATTTTACTAACTTCTGTAGTTCAT 165
***** ******************************************************
consensus_7983#0 CGTGCGGATTATACAGAGGCAGCAGAATCATTCTTAAATTAACTCGATCGTGTGGATGGC 780
consensus_7983#1 NGTGCGGATTATACAGAGGCAGCAGAATCATTCTTAAATTAACTCGATCGTGTGGATGGC 225
***********************************************************
consensus_7983#0 TGGTAGCTTGGCATGCAGGGAAATGTACAAAAACTGAGGTACCAACTGGATCCAAGTGTG 840
consensus_7983#1 TGGTAGCTTGGCATNCAGGGAAATGTACAAAAACTGAGGTNCCAACTGGATCCAAGTGTG 285
************** ************************* *******************
consensus_7983#0 GTTCCTGTTCCATGCCAACAAATGGGGGAAGATGTGTGAAACTTGATTAAAGAAAATATG 900
consensus_7983#1 GTTCCTGTTCCATGCCAACAAATGGGGGAAGATGTGTGAAACTTGATTAAAGAAAATATG 345
************************************************************
consensus_7983#0 TTCTGCGTTGAGTCGCTCGATTGTTGTTAGAGGATAATTGGATATTCAGATGTTGATCTT 960
consensus_7983#1 TTCTGCGTTGAGTCGCTCGATTGTTGTTAGAGGATAATTGGATATTCAGATGTTGATCTT 405
************************************************************
consensus_7983#0 GAAGCTACCCATCATCTCAAAACCATGCAGCACCGAATGTTACTCATTTGCTTTAGTGGC 1020
consensus_7983#1 GAAGCTACCCATCATCTCAAAACCATGCAGCACCGAATGTTACTCATTTGCTTTAGTGGC 465
************************************************************
consensus_7983#0 TGCCTAAAATTCATGGTGAGCCTGATGAATGGTACAGTACATGTTAATGAATTGGCCTAT 1080
consensus_7983#1 TGCCTAAAATTCATGGTGAGCCTGATGAATGGTACAGTACATGTTAATGAATTGGCCTAT 525
************************************************************
consensus_7983#0 CAGTACAGTACAGTAAGATTCAGAAGGTGAACGAGGCAGACAGTGACCAAAACCATGAAT 1140
consensus_7983#1 CAGTACAGTACAGTAAGATTCAGNNGGTGAAAAAAAAAAAAAAAAAAAAAAAAAA----- 580
*********************** ****** * * * * * **** *
consensus_7983#0 TTCAGTGGTGATGGCTTTCAAAATATAGCTAGAAATGCATTTATATTTTTCTCCAACAAA 1200
consensus_7983#1 ------------------------------------------------------------
consensus_7983#0 AAAGGA 1206
consensus_7983#1 ------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||