Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 7993 cluster # 7993       Sequences # 5       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7993#0 length = 1480 sequences # 5  

consensusID : consensus_7993#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1480
fasta sequence
                              [GGCTACTCCCAAATCCGCGAAAAATCGACAGAGACCAGCCGCCCAATCTGCCTGATCCATCGGAGGAGGACGACGAGGAGGAGGTTTGCGAGGCAGCGGCAGGGAGAGGAAGATGTCTTCGCTGCGGAACGCGATC--CAGCGGCGCGCTCACAAGGAGCGCGCCCAGCCGGAGTCGAGGAAGAAGTTCGGGCTTCTGGAGAAGCACAAGGACTACATCGTTCGGGCGAAGGCTTTCCACCAGAAGGAGGAAACCATCAGGAAATTGAAGGAGAAGGCATCATTTAGAAACCCTGATGAGTTCTATTTTAAGATGATCAACAGCAAGACTGTTGATGGAATTCATAGGCCTAAGCCTGAAGCAAACAAGTATACTGAAGATGAACTCATGCTGCTAAAAACTAAAGATATGGGATACATCCTTCAGGGTATTCAGAGTGAAAAGAAGAAAATTGAAAAATTAAGCTCCATGCTTCATGAACTAGACAACAAGCGACCAAACAAGCATGTTTACTTTGCTGA-AGACAGAGAAGAGGTCAAAGAAATACAATCTAGAATAGAACAAAAGAGCAGTTCACTTGGTTTGGACAACATCCCTTCCCGTATAAAGAGGAAAACTGCTTCGTCCTATAGGGAGTTAGAGGAGAGGAAACAGAGGGTTCAAAAGCTTGAGAAACTGTATGCAGACATGGCCTTGCAGAAAGAGTTGAAGAAACCTGGACGGAAAAGAAAACTCCGTGAGGATGAGATTGAGAATCAAACATCCCGGCCTGTTTATAAGTGGCGAGCACAACGGAAGCGGTAAGATGATGTGAATGGCTTACAATGGAATCATTGAGAATATATGGAGTAACCAGTAGATCCTAAAGCAAACGGAGACTATTGTTTATTTTCTTGAATTCTAATGCATTTACATGTAGCAGTGCCCCTCCACAACCGTCTCTCTTCATAGCCTTCACTTGATTGTATTTGTGGATCCATGTTGGATACCACTTTCTGCTACCTGCTACTGATGTGATGTACCTCTGCTTTTTACAAAATGTTGGGTAACTACATCAACAATTGAGAACCTAAACGGTCCGAATCTTCACGCATCGTCCGTAATCAACATTCCAAGGTTAGCAAGCACAGTGCCACCAGAATTAGGGCGTGTTCACTTTGCCGGAAAAAAAACATACCATTTGATGGTAGAGCCAAATATTAGTAATGCCATTCTTTGGTAAAGTCAAAATATCAATGTGTCATTGGCTTTGATACCTTACTAAATTTTGGTGTAATTTTTGTGAGTGGAAGGTTCCGGAATTACCAAATTACCTTACTAAATTTTGGTGTAATTTTTGTGAGTGCAATCCTATTTGTTTGTTACCCTACCAACAAAAATTTGACAATACCAAAATTTAGTAAGGTTTATTCTGGTAGTGGAGTGAACAAGCCACTCTTTAGTGTATGAAGTATTTGATATATTCTCCAGAAAAAAAGGGGT]

[+] EMBL CF324413             [GGCTACTCCCAAATCCGCGAAAAATCGACAGAGACCAGCCGCCCAATCTGCCTGATCCATCGGAGGAGGACGACGAGGAGGAGGTTTGCGAGGCAGCGGCAGGGAGAGGAAGATGTCTTCGCTGCGGAACGC ATCCACACCGGCGCGCTCACAAGGAGCGCGCCCAGCCGGAGTCGAGGAAGAAGTTCGGGCTTCTGGAGAAGCACAAGGACTACATCGTTCGGGCGAAGGCTTTCCACCAGAAGGAGGAAACCATCAGGAAATTGAAGGAGAAGGCATCATTTAGAAACCCTGATGAGTTCTATTTTAAGATGATCAACAGCAAGACTGTTGATGGAATTCATAGGCCTAAGCCTGAAGCAAACAAGTATACTGAAGATGAACTCATGCTGCTAAAAACTAAAGATATGGGATACATCCTTCAGGGTATTCAGAGTGAAAAGAAGAAAATTGAAAAATTAAGCTCCATGCTTCATGAACTAGACAACAAGCGACCAAACAAGCATGTTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AK102143             [   TACTCCCAAATCCGCGAAAAATCGACAGAGACCAGCCGCCCAATCTGCCTGATCCATCGGAGGAGGACGACGAGGAGGAGGTTTGCGAGGCAGCGGCAGGGAGAGGAAGATGTCTTCGCTGCGGAACGCGATC  CAGCGGCGCGCTCACAAGGAGCGCGCCCAGCCGGAGTCGAGGAAGAAGTTCGGGCTTCTGGAGAAGCACAAGGACTACATCGTTCGGGCGAAGGCTTTCCACCAGAAGGAGGAAACCATCAGGAAATTGAAGGAGAAGGCATCATTTAGAAACCCTGATGAGTTCTATTTTAAGATGATCAACAGCAAGACTGTTGATGGAATTCATAGGCCTAAGCCTGAAGCAAACAAGTATACTGAAGATGAACTCATGCTGCTAAAAACTAAAGATATGGGATACATCCTTCAGGGTATTCAGAGTGAAAAGAAGAAAATTGAAAAATTAAGCTCCATGCTTCATGAACTAGACAACAAGCGACCAAACAAGCATGTTTACTTTGCTGA AGACAGAGAAGAGGTCAAAGAAATACAATCTAGAATAGAACAAAAGAGCAGTTCACTTGGTTTGGACAACATCCCTTCGCGTATAAAGAGGAAAACTGCTTCGTCCTATAGGGAGTTAGAGGAGAGGAAACAGAGGGTTCAAAAGCTTGAGAAACTGTATGCAGACATGGCCTTGCAGAAAGAGTTGAAGAAACCTGGACGGAAAAGAAAACTCCGTGAGGATGAGATTGAGAATCAAACATCCCGGCCTGTTTATAAGTGGCGAGCACAACGGAAGCGGTAAGATGATGTGAATGGCTTACAATGGAATCATTGAGAATATATGGAGTAACCAGTAGATCCTAAAGCAAACGGAGACTATTGTTTATTTTCTTGAATTCTAATGCATTTACATGTAGCAGTGCCCCTCCACAACCGTCTCTCTTCATAGCCTTCACTTGATTGTATTTGTGGATCCATGTTGGATACCACTTTCTGCTACCTGCTACTGATGTGATGTACCTCTGCTTTTTACAAAATGTTGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CA756435             [    ACTCCCAAATCCGCGAAAAATCGACAGAGACCAGCCGCCCAATCTGCCTGATCCATCGGAGGAGGACGACGAGGAGGAGGTTTGCGAGGCAGCGGCAGGGAGAGGAAGATGTCTTCGCTGCGGAACGCGATC  CAGCGGCGCGCTCACAAGGAGCGCGCCCAGCCGGAGTCGAGGAAGAAGTTCGGGCTTCTGGAGAAGCACAAGGACTACATCGTTCGGGCGAAGGCTTTCCACCAGAAGGAGGAAACCATCAGGAAATTGAAGGAGAAGGCATCATTTAGAAACCCTGATGAGTTCTATTTTAAGATGATCAACAGCAAGACTGTTGATGGAATTCATAGGCCTAAGCCTGAAGCAAACAAGTATACTGAAGATGAACTCATGCTGCTAAAAACTAAAGATATGGGATACATCCTTCAGGGTATTCAGAGTGAAAAGAAGAAAATTGAAAAATTAAGCTCCATGCTTCATGAACTAGACAACAAGCGACCAAACAAGCATGTTTACTTTGCTGANAGACAGAGAAGAGGTC AAGAAATACAATCTAGAATAGAANCAAAGAGCAGTTCACTTGGTTTGGACAACAT CCTTCCCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AK120752             [                                                         CATCGGAGGAGGACGACGAGGAGGAGGTTTGCGAGGCAGCGGCAGGGAGAGGAAGATGTCTTCGCTGCGGAACGCGATC  CAGCGGCGCGCTCACAAGGAGCGCGCCCAGCCGGAGTCGAGGAAGAAGTTCGGGCTTCTGGAGAAGCACAAGGACTACATCGTTCGGGCGAAGGCTTTCCACCAGAAGGAGGAAACCATCAGGAAATTGAAGGAGAAGGCATCATTTAGAAACCCTGATGAGTTCTATTTTAAGATGATCAACAGCAAGACTGTTGATGGAATTCATAGGCCTAAGCCTGAAGCAAACAAGTATACTGAAGATGAACTCATGCTGCTAAAAACTAAAGATATGGGATACATCCTTCAGGGTATTCAGAGTGAAAAGAAGAAAATTGAAAAATTAAGCTCCATGCTTCATGAACTAGACAACAAGCGACCAAACAAGCATGTTTACTTTGCTGA AGACAGAGAAGAGGTCAAAGAAATACAATCTAGAATAGAACAAAAGAGCAGTTCACTTGGTTTGGACAACATCCCTTCCCGTATAAAGAGGAAAACTGCTTCGTCCTATAGGGAGTTAGAGGAGAGGAAACAGAGGGTTCAAAAGCTTGAGAAACTGTATGCAGACATGGCCTTGCAGAAAGAGTTGAAGAAACCTGGACGGAAAAGAAAACTCCGTGAGGATGAGATTGAGAATCAAACATCCCGGCCTGTTTATAAGTGGCGAGCACAACGGAAGC     GATGATGTGAATGGCTTACAATGGAATCATTGAGAATATATGGAGTAACCAGTAGATCCTAAAGCAAACGGAGACTATTGTTTATTTTCTTGAATTCTGATGCATTTACATGTAGCAGTGCCCCTCCACAACCGTCTCTCTTCATAGCCTTCACTTGATTGTATTTGTGGATCCATGTTGGATACCACTTTCTGCTACCTGCTACTGATGTGATGTACCTCTGCTTTTTACAAAATGTTGGGTAACTACATCAACAATTGAGAACCTAAACGGTCCGAATCTTCACGCATCGTCCGTAATCAACATTCCAAGGTTAGCAAGCACAGTGCCACCAGAATTAGGGCGTGTTCACTTTGCCGGAAAAAAAACATACCATTTGATGGTAGAGCCAAATATTAGTAATGCCATTCTTTGGTAAAGTCAAAATATCAATGTGTCATTGGCTTTGATACCTTACTAAATTTTGGTGTAATTTTTGTGAGTGGAAGGTTCCGGAATTACCAAATTACCTTACTAAATTTTGGTGTAATTTTTGTGAGTGCAATCCTATTTGTTTGTTACCCTACCAACAAAAATTTGACAATACCAAAATTTAGTAAGGTTTATTCTGGTAGTGGAGTGAACAAGCCACTCTTTAGTGTATGAAGTATTTGATATATTCTCCAGAAAAAAAGGGGT]
[-] EMBL D42568               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GCCTTCACTTGATNGTATTTGTGGGTCCATGTTGGATACCANTTTCTGCTACCTGCTACTGATGTGATGTACCTNNNCTTTTTACAAAATGTTGGGTAACTACATCAACAATTGAGAACCTAAACGGTCCGAATCTTCACGCNTCGTCCGTAATCAACATTCCAAGGTTAGCAAGCACAGTGCCACCAGAATTAGGGCGTGTTCACTTTGCCGGAAAAAAAACATACCATTTGATGGTAGAGCCAAATATTAGTAATGCCATTCTTTGGTAAAGTCAAAATATCAATGTGTCATTGGCTT                                                                                                                                                                                                                                        ]


>consensus_7993#0 GGCTACTCCCAAATCCGCGAAAAATCGACAGAGACCAGCCGCCCAATCTGCCTGATCCAT CGGAGGAGGACGACGAGGAGGAGGTTTGCGAGGCAGCGGCAGGGAGAGGAAGATGTCTTC GCTGCGGAACGCGATCCAGCGGCGCGCTCACAAGGAGCGCGCCCAGCCGGAGTCGAGGAA GAAGTTCGGGCTTCTGGAGAAGCACAAGGACTACATCGTTCGGGCGAAGGCTTTCCACCA GAAGGAGGAAACCATCAGGAAATTGAAGGAGAAGGCATCATTTAGAAACCCTGATGAGTT CTATTTTAAGATGATCAACAGCAAGACTGTTGATGGAATTCATAGGCCTAAGCCTGAAGC AAACAAGTATACTGAAGATGAACTCATGCTGCTAAAAACTAAAGATATGGGATACATCCT TCAGGGTATTCAGAGTGAAAAGAAGAAAATTGAAAAATTAAGCTCCATGCTTCATGAACT AGACAACAAGCGACCAAACAAGCATGTTTACTTTGCTGAAGACAGAGAAGAGGTCAAAGA AATACAATCTAGAATAGAACAAAAGAGCAGTTCACTTGGTTTGGACAACATCCCTTCCCG TATAAAGAGGAAAACTGCTTCGTCCTATAGGGAGTTAGAGGAGAGGAAACAGAGGGTTCA AAAGCTTGAGAAACTGTATGCAGACATGGCCTTGCAGAAAGAGTTGAAGAAACCTGGACG GAAAAGAAAACTCCGTGAGGATGAGATTGAGAATCAAACATCCCGGCCTGTTTATAAGTG GCGAGCACAACGGAAGCGGTAAGATGATGTGAATGGCTTACAATGGAATCATTGAGAATA TATGGAGTAACCAGTAGATCCTAAAGCAAACGGAGACTATTGTTTATTTTCTTGAATTCT AATGCATTTACATGTAGCAGTGCCCCTCCACAACCGTCTCTCTTCATAGCCTTCACTTGA TTGTATTTGTGGATCCATGTTGGATACCACTTTCTGCTACCTGCTACTGATGTGATGTAC CTCTGCTTTTTACAAAATGTTGGGTAACTACATCAACAATTGAGAACCTAAACGGTCCGA ATCTTCACGCATCGTCCGTAATCAACATTCCAAGGTTAGCAAGCACAGTGCCACCAGAAT TAGGGCGTGTTCACTTTGCCGGAAAAAAAACATACCATTTGATGGTAGAGCCAAATATTA GTAATGCCATTCTTTGGTAAAGTCAAAATATCAATGTGTCATTGGCTTTGATACCTTACT AAATTTTGGTGTAATTTTTGTGAGTGGAAGGTTCCGGAATTACCAAATTACCTTACTAAA TTTTGGTGTAATTTTTGTGAGTGCAATCCTATTTGTTTGTTACCCTACCAACAAAAATTT GACAATACCAAAATTTAGTAAGGTTTATTCTGGTAGTGGAGTGAACAAGCCACTCTTTAG TGTATGAAGTATTTGATATATTCTCCAGAAAAAAAGGGGT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)