These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7993#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1480 fasta sequence [GGCTACTCCCAAATCCGCGAAAAATCGACAGAGACCAGCCGCCCAATCTGCCTGATCCATCGGAGGAGGACGACGAGGAGGAGGTTTGCGAGGCAGCGGCAGGGAGAGGAAGATGTCTTCGCTGCGGAACGCGATC--CAGCGGCGCGCTCACAAGGAGCGCGCCCAGCCGGAGTCGAGGAAGAAGTTCGGGCTTCTGGAGAAGCACAAGGACTACATCGTTCGGGCGAAGGCTTTCCACCAGAAGGAGGAAACCATCAGGAAATTGAAGGAGAAGGCATCATTTAGAAACCCTGATGAGTTCTATTTTAAGATGATCAACAGCAAGACTGTTGATGGAATTCATAGGCCTAAGCCTGAAGCAAACAAGTATACTGAAGATGAACTCATGCTGCTAAAAACTAAAGATATGGGATACATCCTTCAGGGTATTCAGAGTGAAAAGAAGAAAATTGAAAAATTAAGCTCCATGCTTCATGAACTAGACAACAAGCGACCAAACAAGCATGTTTACTTTGCTGA-AGACAGAGAAGAGGTCAAAGAAATACAATCTAGAATAGAACAAAAGAGCAGTTCACTTGGTTTGGACAACATCCCTTCCCGTATAAAGAGGAAAACTGCTTCGTCCTATAGGGAGTTAGAGGAGAGGAAACAGAGGGTTCAAAAGCTTGAGAAACTGTATGCAGACATGGCCTTGCAGAAAGAGTTGAAGAAACCTGGACGGAAAAGAAAACTCCGTGAGGATGAGATTGAGAATCAAACATCCCGGCCTGTTTATAAGTGGCGAGCACAACGGAAGCGGTAAGATGATGTGAATGGCTTACAATGGAATCATTGAGAATATATGGAGTAACCAGTAGATCCTAAAGCAAACGGAGACTATTGTTTATTTTCTTGAATTCTAATGCATTTACATGTAGCAGTGCCCCTCCACAACCGTCTCTCTTCATAGCCTTCACTTGATTGTATTTGTGGATCCATGTTGGATACCACTTTCTGCTACCTGCTACTGATGTGATGTACCTCTGCTTTTTACAAAATGTTGGGTAACTACATCAACAATTGAGAACCTAAACGGTCCGAATCTTCACGCATCGTCCGTAATCAACATTCCAAGGTTAGCAAGCACAGTGCCACCAGAATTAGGGCGTGTTCACTTTGCCGGAAAAAAAACATACCATTTGATGGTAGAGCCAAATATTAGTAATGCCATTCTTTGGTAAAGTCAAAATATCAATGTGTCATTGGCTTTGATACCTTACTAAATTTTGGTGTAATTTTTGTGAGTGGAAGGTTCCGGAATTACCAAATTACCTTACTAAATTTTGGTGTAATTTTTGTGAGTGCAATCCTATTTGTTTGTTACCCTACCAACAAAAATTTGACAATACCAAAATTTAGTAAGGTTTATTCTGGTAGTGGAGTGAACAAGCCACTCTTTAGTGTATGAAGTATTTGATATATTCTCCAGAAAAAAAGGGGT] [+] EMBL CF324413 [GGCTACTCCCAAATCCGCGAAAAATCGACAGAGACCAGCCGCCCAATCTGCCTGATCCATCGGAGGAGGACGACGAGGAGGAGGTTTGCGAGGCAGCGGCAGGGAGAGGAAGATGTCTTCGCTGCGGAACGC ATCCACACCGGCGCGCTCACAAGGAGCGCGCCCAGCCGGAGTCGAGGAAGAAGTTCGGGCTTCTGGAGAAGCACAAGGACTACATCGTTCGGGCGAAGGCTTTCCACCAGAAGGAGGAAACCATCAGGAAATTGAAGGAGAAGGCATCATTTAGAAACCCTGATGAGTTCTATTTTAAGATGATCAACAGCAAGACTGTTGATGGAATTCATAGGCCTAAGCCTGAAGCAAACAAGTATACTGAAGATGAACTCATGCTGCTAAAAACTAAAGATATGGGATACATCCTTCAGGGTATTCAGAGTGAAAAGAAGAAAATTGAAAAATTAAGCTCCATGCTTCATGAACTAGACAACAAGCGACCAAACAAGCATGTTT ] [+] EMBL AK102143 [ TACTCCCAAATCCGCGAAAAATCGACAGAGACCAGCCGCCCAATCTGCCTGATCCATCGGAGGAGGACGACGAGGAGGAGGTTTGCGAGGCAGCGGCAGGGAGAGGAAGATGTCTTCGCTGCGGAACGCGATC CAGCGGCGCGCTCACAAGGAGCGCGCCCAGCCGGAGTCGAGGAAGAAGTTCGGGCTTCTGGAGAAGCACAAGGACTACATCGTTCGGGCGAAGGCTTTCCACCAGAAGGAGGAAACCATCAGGAAATTGAAGGAGAAGGCATCATTTAGAAACCCTGATGAGTTCTATTTTAAGATGATCAACAGCAAGACTGTTGATGGAATTCATAGGCCTAAGCCTGAAGCAAACAAGTATACTGAAGATGAACTCATGCTGCTAAAAACTAAAGATATGGGATACATCCTTCAGGGTATTCAGAGTGAAAAGAAGAAAATTGAAAAATTAAGCTCCATGCTTCATGAACTAGACAACAAGCGACCAAACAAGCATGTTTACTTTGCTGA AGACAGAGAAGAGGTCAAAGAAATACAATCTAGAATAGAACAAAAGAGCAGTTCACTTGGTTTGGACAACATCCCTTCGCGTATAAAGAGGAAAACTGCTTCGTCCTATAGGGAGTTAGAGGAGAGGAAACAGAGGGTTCAAAAGCTTGAGAAACTGTATGCAGACATGGCCTTGCAGAAAGAGTTGAAGAAACCTGGACGGAAAAGAAAACTCCGTGAGGATGAGATTGAGAATCAAACATCCCGGCCTGTTTATAAGTGGCGAGCACAACGGAAGCGGTAAGATGATGTGAATGGCTTACAATGGAATCATTGAGAATATATGGAGTAACCAGTAGATCCTAAAGCAAACGGAGACTATTGTTTATTTTCTTGAATTCTAATGCATTTACATGTAGCAGTGCCCCTCCACAACCGTCTCTCTTCATAGCCTTCACTTGATTGTATTTGTGGATCCATGTTGGATACCACTTTCTGCTACCTGCTACTGATGTGATGTACCTCTGCTTTTTACAAAATGTTGGG ] [+] EMBL CA756435 [ ACTCCCAAATCCGCGAAAAATCGACAGAGACCAGCCGCCCAATCTGCCTGATCCATCGGAGGAGGACGACGAGGAGGAGGTTTGCGAGGCAGCGGCAGGGAGAGGAAGATGTCTTCGCTGCGGAACGCGATC CAGCGGCGCGCTCACAAGGAGCGCGCCCAGCCGGAGTCGAGGAAGAAGTTCGGGCTTCTGGAGAAGCACAAGGACTACATCGTTCGGGCGAAGGCTTTCCACCAGAAGGAGGAAACCATCAGGAAATTGAAGGAGAAGGCATCATTTAGAAACCCTGATGAGTTCTATTTTAAGATGATCAACAGCAAGACTGTTGATGGAATTCATAGGCCTAAGCCTGAAGCAAACAAGTATACTGAAGATGAACTCATGCTGCTAAAAACTAAAGATATGGGATACATCCTTCAGGGTATTCAGAGTGAAAAGAAGAAAATTGAAAAATTAAGCTCCATGCTTCATGAACTAGACAACAAGCGACCAAACAAGCATGTTTACTTTGCTGANAGACAGAGAAGAGGTC AAGAAATACAATCTAGAATAGAANCAAAGAGCAGTTCACTTGGTTTGGACAACAT CCTTCCCG ] [+] EMBL AK120752 [ CATCGGAGGAGGACGACGAGGAGGAGGTTTGCGAGGCAGCGGCAGGGAGAGGAAGATGTCTTCGCTGCGGAACGCGATC CAGCGGCGCGCTCACAAGGAGCGCGCCCAGCCGGAGTCGAGGAAGAAGTTCGGGCTTCTGGAGAAGCACAAGGACTACATCGTTCGGGCGAAGGCTTTCCACCAGAAGGAGGAAACCATCAGGAAATTGAAGGAGAAGGCATCATTTAGAAACCCTGATGAGTTCTATTTTAAGATGATCAACAGCAAGACTGTTGATGGAATTCATAGGCCTAAGCCTGAAGCAAACAAGTATACTGAAGATGAACTCATGCTGCTAAAAACTAAAGATATGGGATACATCCTTCAGGGTATTCAGAGTGAAAAGAAGAAAATTGAAAAATTAAGCTCCATGCTTCATGAACTAGACAACAAGCGACCAAACAAGCATGTTTACTTTGCTGA AGACAGAGAAGAGGTCAAAGAAATACAATCTAGAATAGAACAAAAGAGCAGTTCACTTGGTTTGGACAACATCCCTTCCCGTATAAAGAGGAAAACTGCTTCGTCCTATAGGGAGTTAGAGGAGAGGAAACAGAGGGTTCAAAAGCTTGAGAAACTGTATGCAGACATGGCCTTGCAGAAAGAGTTGAAGAAACCTGGACGGAAAAGAAAACTCCGTGAGGATGAGATTGAGAATCAAACATCCCGGCCTGTTTATAAGTGGCGAGCACAACGGAAGC GATGATGTGAATGGCTTACAATGGAATCATTGAGAATATATGGAGTAACCAGTAGATCCTAAAGCAAACGGAGACTATTGTTTATTTTCTTGAATTCTGATGCATTTACATGTAGCAGTGCCCCTCCACAACCGTCTCTCTTCATAGCCTTCACTTGATTGTATTTGTGGATCCATGTTGGATACCACTTTCTGCTACCTGCTACTGATGTGATGTACCTCTGCTTTTTACAAAATGTTGGGTAACTACATCAACAATTGAGAACCTAAACGGTCCGAATCTTCACGCATCGTCCGTAATCAACATTCCAAGGTTAGCAAGCACAGTGCCACCAGAATTAGGGCGTGTTCACTTTGCCGGAAAAAAAACATACCATTTGATGGTAGAGCCAAATATTAGTAATGCCATTCTTTGGTAAAGTCAAAATATCAATGTGTCATTGGCTTTGATACCTTACTAAATTTTGGTGTAATTTTTGTGAGTGGAAGGTTCCGGAATTACCAAATTACCTTACTAAATTTTGGTGTAATTTTTGTGAGTGCAATCCTATTTGTTTGTTACCCTACCAACAAAAATTTGACAATACCAAAATTTAGTAAGGTTTATTCTGGTAGTGGAGTGAACAAGCCACTCTTTAGTGTATGAAGTATTTGATATATTCTCCAGAAAAAAAGGGGT] [-] EMBL D42568 [ GCCTTCACTTGATNGTATTTGTGGGTCCATGTTGGATACCANTTTCTGCTACCTGCTACTGATGTGATGTACCTNNNCTTTTTACAAAATGTTGGGTAACTACATCAACAATTGAGAACCTAAACGGTCCGAATCTTCACGCNTCGTCCGTAATCAACATTCCAAGGTTAGCAAGCACAGTGCCACCAGAATTAGGGCGTGTTCACTTTGCCGGAAAAAAAACATACCATTTGATGGTAGAGCCAAATATTAGTAATGCCATTCTTTGGTAAAGTCAAAATATCAATGTGTCATTGGCTT ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||