cluster # 7996

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Oryza sativa
cluster # 7996 cluster # 7996 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7996#0 length = 820 sequences # 4

consensus_7996#1 length = 642 sequences # 1

consensusID : consensus_7996#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 820
fasta sequence

                              [CACCATTTATGGCTCCTGGAGTTAATGCCAGGCCCCTTCCACCACCCCCTCCGGGATTACCTCCAGCACAGATGCAAATGGCACCCTTTGGTGTACCTCCTGGTCCACCACCAATGCTTCCGCCTCCATTTTATCCAGGACCCCCAATTCAAACAGGTGATTTTGCTGCCTTTGGTCCAAGGCCAAATGTACCTCAGCAGCCATCATATGTCAAGTCAGCTGCCCCAACAGTTGTAAAGAGACCATTAGCACAACATACTCCTGAGCTCACAGCTATGGTTCCTGCATCAGTTCGAGTTAAGAGAGAATCGGCTCTCCTCAAACCAAAACCAAAGGTGCAACAGTCAGCAACAACATCATCTTCTGCCCTGAAACCGTCAGTGGCTCCAATTAGATCTGAGCCCCGGCCTTCGTCCTCAGTATCCAAGCCACAAAGCATTGATGATTCCTACATGGCATTCTTGGAAGATATGAAGGAATTGGGTGCTCTTGATGAGTAGCTCAATTAGTCTGAC-TGCAAATTGCAGTTGTTGACATGAACTAAGCATGAGCCCTCTTTGCGTTAGGGCTCACGAGTA-GGTTTTCATGTACTCAGAAACCATGTCCATTTCCCCATGAGAAAACAATATTCCAGATCTAGTTTTGTGAAAATGGGGAAACGTTCATAATCAAATATCAGGTTGCTGNGCAACACAACTGTACCAAGTCAAATCAATAGAGCATGATTGCCTATCTTCACAGGTTGTATGNTCAACGAGNTGNCCTGGCAGATATTCAAATTTAAANCACCCAGTCCGNGGGGNGACACGACTAATAGCTT]

[+] EMBL CA767339             [CACCATTTATGGCTCCTGGAGTTAATGCCAGGCCCCTTCCACCACCCCCTCCGGGATTACCTCCAGCACAGATGCAAATGGCACCCTTTGGTGTACCTCCTGGTCCACCACCAATGCTTCCGCCTCCATTTTATCCAGGACCCCCAATTCAAACAGGTGATTTTGCTGCCTTTGGTCCAAGGCCAAATGTACCTCAGCAGCCATCATATGTCAAGTCAGCTGCCCCAACAGTTGTAAAGAGACCATTAGCACAACATACTCCTGAGCTCACAGCTATGGTTCCTGCATCAGTTCGAGTTAAGAGAGAATCGGCTCTCCTCAAACCAGAACCAAAGGTGCAACAGTCAGCAACAACATCATCTTCTGCCCTGAAACCGTCAGTGGCTCCAATTAGATCTGAGCCCCGGCCTTCGTCCTCAGTATCCAAGCCACAAAGCATTGATGATTCCTACATGGCATTCTTGGAAGATATGAAGGGATTGGGTGCTCTTGATGAGTAGCTCAATTAGTCTGAC TGCAAATTGCAGTTGTTGACATGAACTAAGCATGAGCCCTCTTTGCGTTAGGGCTCACGAGTA GGTTTTCATGTACTCAGAAACCATGTCCATTTCCCCATGAGAAAACAATATTCCAGATCTAGTTTTGTGAAAATGGGGAAACGTTCATAATCAAATATCAGGTTGCTGNGCAACACAACTGTACCAAGTCAAATCAATAGAGCATGATTGCCTATCTTCACAGGTTGTATGNTCAACGAGNTGNCCTGGCAGATATTCAAATTTAAANCACCCAGTCCGNGGGGNGACACGACTAATAGCTT]
[+] EMBL AU091985             [                                                                                                                     TTCCGCCTCCATTTTATCCAGGACCCCCAATTCAAACAGGTGATTTTGCTGCCTTTGGTCCAAGGCCAAATGTACCTCAGCAGCCATCATATGTCAAGTCAGCTGCCCCAACAGTTGTAAAGAGACCATTAGCACAACATACTCCTGAGCTCACAGCTATGGTTCCTGCATCAGTTCGAGTTAAGAGAGAATCGGCTCTCCTCAAACCAAAACCAAAGGTGCAACAGTCAGCAACAACATCATCTTCTGCCCTGAAACCGTCAGTGGCTCCAATTAGATCTGAGCCCCGGCCTTCGTCCTCAGTATCCAAGCCACAAAGCATTGATGATTCCTACATGGCATTCTTGGAAGATATGAAGGAATTGGGTGCTCTTGATGAGTAGCTCAATTAGTCTGAC TGCAAATTGCAGTTGTTGACATGAACTAAGCATGAGCCCTCTTTGCGTTAGGGCTCACGAGTA GGTTTTCATGTACTCAGAAACCATGTCCATTTCCCCATGAGAAAACAATATTCCAGATCTAGTTTTGTG                                                                                                                                                                             ]
[+] EMBL OSC25921             [                                                                                                                                                                                                                                                                    CCTGAGCTCACAGCTATGGTTCCTGCATCAGTTCGAGTTAAGAGAGAATCGGCTCTCCTCAAACCAAAACCAAAGGTGCAACAGTCAGCAACAACATCATCTTCTGCCCTGAAACCGTCAGTGGCTCCAATTAGATCTGAGCCCCGGCCTTCGTCCTCAGTATCCAAGCCACAAAGCATTGATGATTCCTACATGGCATTCTTGGAAGATATGAAGGAATTGGGTGCTCTTGATGAGTAGCTCAATTAGTCTGAC TGCAAATTGCAGTTGTTGACATGAACTAAGCATGAGCCCTCTTTGCGTTAGGGCTCACGAGTAGGGTTTTCATGTACTCAGAAACC                                                                                                                                                                                                                            ]
[+] EMBL OSC25642             [                                                                                                                                                                                                                                                                    CCTGAGCTCACAGCTATGGTTCCTGCATCAGTTCGAGTTAAGAGAGAATCGGCTCTCCTCAAACCAAAACCAAAGGTGCAACAGTCAGCAACAACATCATCTTCTGCCCTGAAACCGTCAGTGGCTCCAATTAGATCTGAGCCCCGGCCTTCGTCCTCAGTATCCAAGCCACAAAGCATTGATGATTCCTACATGGCATTCTTGGAAGATATGAAGGAATTGGGTGCTCTTGATGAGTAGCTCAATTAGTCTGACTTGCAAATTGCAGTTGTT                                                                                                                                                                                                                                                                                                 ]




>consensus_7996#0
CACCATTTATGGCTCCTGGAGTTAATGCCAGGCCCCTTCCACCACCCCCTCCGGGATTAC
CTCCAGCACAGATGCAAATGGCACCCTTTGGTGTACCTCCTGGTCCACCACCAATGCTTC
CGCCTCCATTTTATCCAGGACCCCCAATTCAAACAGGTGATTTTGCTGCCTTTGGTCCAA
GGCCAAATGTACCTCAGCAGCCATCATATGTCAAGTCAGCTGCCCCAACAGTTGTAAAGA
GACCATTAGCACAACATACTCCTGAGCTCACAGCTATGGTTCCTGCATCAGTTCGAGTTA
AGAGAGAATCGGCTCTCCTCAAACCAAAACCAAAGGTGCAACAGTCAGCAACAACATCAT
CTTCTGCCCTGAAACCGTCAGTGGCTCCAATTAGATCTGAGCCCCGGCCTTCGTCCTCAG
TATCCAAGCCACAAAGCATTGATGATTCCTACATGGCATTCTTGGAAGATATGAAGGAAT
TGGGTGCTCTTGATGAGTAGCTCAATTAGTCTGACTGCAAATTGCAGTTGTTGACATGAA
CTAAGCATGAGCCCTCTTTGCGTTAGGGCTCACGAGTAGGTTTTCATGTACTCAGAAACC
ATGTCCATTTCCCCATGAGAAAACAATATTCCAGATCTAGTTTTGTGAAAATGGGGAAAC
GTTCATAATCAAATATCAGGTTGCTGNGCAACACAACTGTACCAAGTCAAATCAATAGAG
CATGATTGCCTATCTTCACAGGTTGTATGNTCAACGAGNTGNCCTGGCAGATATTCAAAT
TTAAANCACCCAGTCCGNGGGGNGACACGACTAATAGCTT

consensusID : consensus_7996#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 642
fasta sequence

                              [GGCCGGCACCAATGCTTCCGCTTCCATTTTATCCAGGACCCCCAATTCAAACAGGTGATTTTGCTGCCTTTGGCCAAGGCCCAAATGACCTCAGCAGCCATCATATGTCAAGTCAGCTGCCCCAACAGTTGTAAAGAGCCATTAGCACAACATACTCCTGAGCTCACAGCTATGGTTCCTGCATCAGTTCGAGTTAAGAGAGAATCGGCTCTCCTCAAACCAAAACCAAAGGTGCAACAGTCAGCAACAACATCATCTTCTGCCCTGAAACCGTCAGTGGCTCCAATTAGATCTGAGCCCCGGCCTTNGTCCTCAGTATCCAAGCCACAAAGCATTGATGATTCCTACATGGCATTCTTGGAAGATATGAAGGAATTGGGTGCTCTTGATGAGTAGCTCAATTAGTCTGACTGCAAATTGCAGTTGTTGACATGAACTAAGCATGAGCCCTCTTTGCGTTAGGGCTCACGAGTAGGTTTTCATGTACTCAGAAACCATGTCCATTTCCCCATGAGAAAACAATATTCCAGATCTAGTTTTGTGAAAATGGGGAAACGTTCATAATCAAATATCAGTTGCTGTGCAACACAACTGTACCAAGTCAAATCAATAGAGCATGATTGCCTAAAAAAAAAAAAAAAA]

[+] EMBL AU091986             [GGCCGGCACCAATGCTTCCGCTTCCATTTTATCCAGGACCCCCAATTCAAACAGGTGATTTTGCTGCCTTTGGCCAAGGCCCAAATGACCTCAGCAGCCATCATATGTCAAGTCAGCTGCCCCAACAGTTGTAAAGAGCCATTAGCACAACATACTCCTGAGCTCACAGCTATGGTTCCTGCATCAGTTCGAGTTAAGAGAGAATCGGCTCTCCTCAAACCAAAACCAAAGGTGCAACAGTCAGCAACAACATCATCTTCTGCCCTGAAACCGTCAGTGGCTCCAATTAGATCTGAGCCCCGGCCTTNGTCCTCAGTATCCAAGCCACAAAGCATTGATGATTCCTACATGGCATTCTTGGAAGATATGAAGGAATTGGGTGCTCTTGATGAGTAGCTCAATTAGTCTGACTGCAAATTGCAGTTGTTGACATGAACTAAGCATGAGCCCTCTTTGCGTTAGGGCTCACGAGTAGGTTTTCATGTACTCAGAAACCATGTCCATTTCCCCATGAGAAAACAATATTCCAGATCTAGTTTTGTGAAAATGGGGAAACGTTCATAATCAAATATCAGTTGCTGTGCAACACAACTGTACCAAGTCAAATCAATAGAGCATGATTGCCTAAAAAAAAAAAAAAAA]




>consensus_7996#1
GGCCGGCACCAATGCTTCCGCTTCCATTTTATCCAGGACCCCCAATTCAAACAGGTGATT
TTGCTGCCTTTGGCCAAGGCCCAAATGACCTCAGCAGCCATCATATGTCAAGTCAGCTGC
CCCAACAGTTGTAAAGAGCCATTAGCACAACATACTCCTGAGCTCACAGCTATGGTTCCT
GCATCAGTTCGAGTTAAGAGAGAATCGGCTCTCCTCAAACCAAAACCAAAGGTGCAACAG
TCAGCAACAACATCATCTTCTGCCCTGAAACCGTCAGTGGCTCCAATTAGATCTGAGCCC
CGGCCTTNGTCCTCAGTATCCAAGCCACAAAGCATTGATGATTCCTACATGGCATTCTTG
GAAGATATGAAGGAATTGGGTGCTCTTGATGAGTAGCTCAATTAGTCTGACTGCAAATTG
CAGTTGTTGACATGAACTAAGCATGAGCCCTCTTTGCGTTAGGGCTCACGAGTAGGTTTT
CATGTACTCAGAAACCATGTCCATTTCCCCATGAGAAAACAATATTCCAGATCTAGTTTT
GTGAAAATGGGGAAACGTTCATAATCAAATATCAGTTGCTGTGCAACACAACTGTACCAA
GTCAAATCAATAGAGCATGATTGCCTAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7996#0      CACCATTTATGGCTCCTGGAGTTAATGCCAGGCCCCTTCCACCACCCCCTCCGGGATTAC 60
consensus_7996#1      ------------------------------------------------------------
                                                                                  

consensus_7996#0      CTCCAGCACAGATGCAAATGGCACCCTTTGGTGTACCTCCTGGTCCACCACCAATGCTTC 120
consensus_7996#1      ------------------------------------------GGCCGGCACCAATGCTTC 18
                                                                * **  ************

consensus_7996#0      CGCCTCCATTTTATCCAGGACCCCCAATTCAAACAGGTGATTTTGCTGCCTTTGGTCCAA 180
consensus_7996#1      CGCTTCCATTTTATCCAGGACCCCCAATTCAAACAGGTGATTTTGCTGCCTTTGGCCAAG 78
                      *** *************************************************** * * 

consensus_7996#0      GGCCAAATGTACCTCAGCAGCCATCATATGTCAAGTCAGCTGCCCCAACAGTTGTAAAGA 240
consensus_7996#1      GCCCAAATG-ACCTCAGCAGCCATCATATGTCAAGTCAGCTGCCCCAACAGTTGTAAAGA 137
                      * ******* **************************************************

consensus_7996#0      GACCATTAGCACAACATACTCCTGAGCTCACAGCTATGGTTCCTGCATCAGTTCGAGTTA 300
consensus_7996#1      G-CCATTAGCACAACATACTCCTGAGCTCACAGCTATGGTTCCTGCATCAGTTCGAGTTA 196
                      * **********************************************************

consensus_7996#0      AGAGAGAATCGGCTCTCCTCAAACCAAAACCAAAGGTGCAACAGTCAGCAACAACATCAT 360
consensus_7996#1      AGAGAGAATCGGCTCTCCTCAAACCAAAACCAAAGGTGCAACAGTCAGCAACAACATCAT 256
                      ************************************************************

consensus_7996#0      CTTCTGCCCTGAAACCGTCAGTGGCTCCAATTAGATCTGAGCCCCGGCCTTCGTCCTCAG 420
consensus_7996#1      CTTCTGCCCTGAAACCGTCAGTGGCTCCAATTAGATCTGAGCCCCGGCCTTNGTCCTCAG 316
                      *************************************************** ********

consensus_7996#0      TATCCAAGCCACAAAGCATTGATGATTCCTACATGGCATTCTTGGAAGATATGAAGGAAT 480
consensus_7996#1      TATCCAAGCCACAAAGCATTGATGATTCCTACATGGCATTCTTGGAAGATATGAAGGAAT 376
                      ************************************************************

consensus_7996#0      TGGGTGCTCTTGATGAGTAGCTCAATTAGTCTGACTGCAAATTGCAGTTGTTGACATGAA 540
consensus_7996#1      TGGGTGCTCTTGATGAGTAGCTCAATTAGTCTGACTGCAAATTGCAGTTGTTGACATGAA 436
                      ************************************************************

consensus_7996#0      CTAAGCATGAGCCCTCTTTGCGTTAGGGCTCACGAGTAGGTTTTCATGTACTCAGAAACC 600
consensus_7996#1      CTAAGCATGAGCCCTCTTTGCGTTAGGGCTCACGAGTAGGTTTTCATGTACTCAGAAACC 496
                      ************************************************************

consensus_7996#0      ATGTCCATTTCCCCATGAGAAAACAATATTCCAGATCTAGTTTTGTGAAAATGGGGAAAC 660
consensus_7996#1      ATGTCCATTTCCCCATGAGAAAACAATATTCCAGATCTAGTTTTGTGAAAATGGGGAAAC 556
                      ************************************************************

consensus_7996#0      GTTCATAATCAAATATCAGGTTGCTGNGCAACACAACTGTACCAAGTCAAATCAATAGAG 720
consensus_7996#1      GTTCATAATCAAATATCAG-TTGCTGTGCAACACAACTGTACCAAGTCAAATCAATAGAG 615
                      ******************* ****** *********************************

consensus_7996#0      CATGATTGCCTATCTTCACAGGTTGTATGNTCAACGAGNTGNCCTGGCAGATATTCAAAT 780
consensus_7996#1      CATGATTGCCTAAAAAAAAAAAAAAAA--------------------------------- 642
                      ************     * *      *                                 

consensus_7996#0      TTAAANCACCCAGTCCGNGGGGNGACACGACTAATAGCTT 820
consensus_7996#1      ----------------------------------------