These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7999#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 706 fasta sequence [TTTTTTTATTTGGAACGGAAGCAGAAGATTTTCAATAATTACCAATGTGGTTTTCAGTTTACATGTCGTGAAGTGACATTAACGGCCACTGAATTGATAGAGCCACATAATAGCACAATTGCGGATCCACCAAAGTGAGATACACGGTTTTTAATGTGCTGTAGTGACCATAAAGCATAAATGGCTACCCTGAAGTCTGCAGGTAGCAACCAAATTTGAAATGCACAGGTAAATGCATAGTTTCATATGGATACTCAAGAGCACACACCCTTGCAAGGAGCGTCCTTGCAGCGGCAAACAGGCCTCCCTGAAAGTTCCCATCCATTAAATCCACGTTCAAGGACCATGATGTTCTTTACATCTGAATCTTCATCAGCCTCTGACAAATAGTCCAGATACATTTGCGCACAAGATGGGCCACGCACCTTGCTGAGGGCACAGTGGGAGACGAGGGTTTCCTTGCCCTTGGTGGCCTGGGCCAGCTCCGGCAGCCGCTCCCCGAAGCTGTCGCTGGCGTAATGATGCGAGCCGGCGATGTGCGCGTCGTAGATCCTCTCTTCGTCCCTGACATCGACGACGGCGATCCGGGGGTCCCGGAGCATGGGTACGAGCTGCGCCGCGGAAACGTAGGAGACGCCCCTCGCCATCGCCGCCGCCGCCGGCCGTGTGAGCGATGGCACTCTGTGTTTGATGGGCCTTTCTACTC] [+] EMBL CF290991 [TTTTTTTATTTGGAACGGAAGCAGAAGATTTTCAATAATTACCAATGTGGTTTTCAGTTTACATGTCGTGAAGTGACATTAACGGCCACTGAATTGATAGAGCCACATAATAGCACAATTGCGGATCCACCAAAGTGAGATACACGGTTTTTAATGTGCTGTAGTGACCATAAAGCATAAATGGCTACCCTGAAGTCTGCAGGTAGCAACCAAATTTGAAATGCACAGGTAAATGCATAGTTTCATATGGATACTCAAGAGCACACACCCTTGCAAGGAGCGTCCTTGCAGCGGCAAACAGGCCTCCCTGAAAGTTCCCATCCATTAAATCCACGTTCAAGGACCATGATGTTCTTTACATCTGAATCTTCATCAGCCTCTGACAAATAGTCCAGATACATTTGCGCACAAGATGGGCCACGCACCTTGCTGAGGGCACAGTGGGAGACGAGGGTTTCCTTGCCCTTGGTGGCCTGGGCCAGCTCCGGCAGCCGCTCCCCGAAGCTGTCGCTGGCGTAATGATGCGAGCCGGCGATGTGCGCGTCGTAGATCCTCTCTTCGTCCCTGACATCGACGACGGCGATCCGGGGGTCCCGGAGCATGGGTACGAGCTGCGCCGCGGAAACGTAGGAGACGCCCCTCGCCATCGCCGCCGCCGCCGGCCGTGTGAGCGATGGCACTCTGTGTTTGATGGGCCT ] [-] EMBL AK102520 [ CAGAAGATTTTCAATAATTACCAATGTGGTTTTCAGTTTACATGTCGTGAAGTGACATTAACGGCCACTGAATTGATAGAGCCACATAATAGCACAATTGCGGATCCACCAAAGTGAGATACACGGTTTTTAATGTGCTGTAGTGACCATAAAGCATAAATGGCTACCCTGAAGTCTGCAGGTAGCAACCAAATTTGAAATGCACAGGTAAATGCATAGTTTCATATGGATACTCAAGAGCACACACCCTTGCAAGGAGCGTCCTTGCAGCGGCAAACAGGCCTCCCTGAAAGTTCCCATCCATTAAATCCACGTTCAAGGACCATGATGTTCTTTACATCTGAATCTTCATCAGCCTCTGACAAATAGTCCAGATACATTTGCGCACAAGATGGGCCACGCACCTTGCTGAGGGCACAGTGGAAGACGAGGGTTTCCTTGCCCTTGGTGGCCTGGGCCAGCTCCGGCAGCCGCTCCCCGAAGCTGTCGCTGGCGTAATGATGCGAGCCGGCGATGTGCGCGTCGTAGATCCTCTCTTCGTCCCTGACATCGACGACGGCGATCCGGGGGTCCCGGAGCATGGGGACGAGCTGCGCCGCGGAAACGTAGGAGACGCCCCTCGCCATCGCCGCCGCCGCCGGCCGTGTGAGCGATGGCACTCTGTGTTT ] [-] EMBL CF290990 [ CACATAATAGCACAATTGCGGATCCACCAAAGTGAGATACACGGTTTTTAATGTGCTGTAGTGACCATAAAGCATAAATGGCTACCCTGAAGTCTGCAGGTAGCAACCAAATTTGAAATGCACAGGTAAATGCATAGTTTCATATGGATACTCAAGAGCACACACCCTTGCAAGGAGCGTCCTTGCAGCGGCAAACAGGCCTCCCTGAAAGTTCCCATCCATTAAATCCACGTTCAAGGACCATGATGTTCTTTACATCTGAATCTTCATCAGCCTCTGACAAATAGTCCAGATACATTTGCGCACAAGATGGGCCACGCACCTTGCTGAGGGCACAGTGGGAGACGAGGGTTTCCTTGCCCTTGGTGGCCTGGGCCAGCTCCGGCAGCCGCTCCCCGAAGCTGTCGCTGGCGTAATGATGCGAGCCGGCGATGTGCGCGTCGTAGATCCTCTCTTCGTCCCTGACATCGACGACGGCGATCCGGGGGTCCCGGAGCATGGGTACGAGCTGCGCCGCGGAAACGTAGGAGACGCCCCTCGCCATCGCCGCCGCCGCCGGCCGTGTGAGCGA GGCACTCTG GTTT ATGGGCCTTTCTACTC] [-] EMBL CF293892 [ AGGTAGCAACCAAATTTGAAATGCACAGGTAAATGCATAGTTTCATATGGATACTCAAGAGCACACACCCTTGCAAGGAGCGTCCTTGCAGCGGCAAACAGGCCTCCCTGAAAGTTCCCATCCATTAAATCCACGTTCAAGGACCATGATGTTCTTTACATCTGAATCTTCATCAGCCTCTGACAAATAGTCCAGATACATTTGCGCACAAGATGGGCCACGCACCTTGCTGAGGGCACAGTGGAAGACGAGGGTTTCCTTGCCCTTGGTGGCCTGGGCCAGCTCCGGCAGCCGCTCCCCGAAGCTGTCGCTGGCGTAATGATGCGAGCCGGCGATGTGCGCGTCGTAGATCCTCTCTTCGTCCCTGACATCGACGACGGCGATCCGGGGGTCCCGGAGCATGGGGACGAGCTGCGCCGCGGAAACGTAGGAGACGCCCCTCGCCATCGCCGCCGCCGCCGGCCGTGTGAGCGATGGCACTCTGTGTTTGATGG ] consensusID : consensus_7999#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 272 fasta sequence [TTTTTTTTTTTTTTTTTGGAACGGAAGCAGAAGATTTTCAATAATTACCAATGGGGTTTTCAGTTTACATGTCGGGAAGTGACATTAACGGCCACTGAATTGATAGAGCCACATAATAGCACAATTGCGGATCCACCAAAGGGAGATACACGGTTTTTAATGGGCTGTAGTGACCATAAAGCATAAATGGCTACCCTGAAGTCTGCAGGTAGCAACCAAATTTGAAACGCACAGGTAAATGCATAGTTTCATATCCCCTTGTCTCGTCCTCT] [+] EMBL CA761617 [TTTTTTTTTTTTTTTTTGGAACGGAAGCAGAAGATTTTCAATAATTACCAATGGGGTTTTCAGTTTACATGTCGGGAAGTGACATTAACGGCCACTGAATTGATAGAGCCACATAATAGCACAATTGCGGATCCACCAAAGGGAGATACACGGTTTTTAATGGGCTGTAGTGACCATAAAGCATAAATGGCTACCCTGAAGTCTGCAGGTAGCAACCAAATTTGAAACGCACAGGTAAATGCATAGTTTCATATCCCCTTGTCTCGTCCTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7999#0 ------TTTTTTTATTTGGAACGGAAGCAGAAGATTTTCAATAATTACCAATGTGGTTTT 54 consensus_7999#1 TTTTTTTTTTTTTTTTTGGAACGGAAGCAGAAGATTTTCAATAATTACCAATGGGGTTTT 60 ******* *************************************** ****** consensus_7999#0 CAGTTTACATGTCGTGAAGTGACATTAACGGCCACTGAATTGATAGAGCCACATAATAGC 114 consensus_7999#1 CAGTTTACATGTCGGGAAGTGACATTAACGGCCACTGAATTGATAGAGCCACATAATAGC 120 ************** ********************************************* consensus_7999#0 ACAATTGCGGATCCACCAAAGTGAGATACACGGTTTTTAATGTGCTGTAGTGACCATAAA 174 consensus_7999#1 ACAATTGCGGATCCACCAAAGGGAGATACACGGTTTTTAATGGGCTGTAGTGACCATAAA 180 ********************* ******************** ***************** consensus_7999#0 GCATAAATGGCTACCCTGAAGTCTGCAGGTAGCAACCAAATTTGAAATGCACAGGTAAAT 234 consensus_7999#1 GCATAAATGGCTACCCTGAAGTCTGCAGGTAGCAACCAAATTTGAAACGCACAGGTAAAT 240 *********************************************** ************ consensus_7999#0 GCATAGTTTCATATGGATACTCAAGAGCACACACCCTTGCAAGGAGCGTCCTTGCAGCGG 294 consensus_7999#1 GCATAGTTTCATAT-----CCCCTTGTCTCGTCCTCT----------------------- 272 ************** * * * * * ** consensus_7999#0 CAAACAGGCCTCCCTGAAAGTTCCCATCCATTAAATCCACGTTCAAGGACCATGATGTTC 354 consensus_7999#1 ------------------------------------------------------------ consensus_7999#0 TTTACATCTGAATCTTCATCAGCCTCTGACAAATAGTCCAGATACATTTGCGCACAAGAT 414 consensus_7999#1 ------------------------------------------------------------ consensus_7999#0 GGGCCACGCACCTTGCTGAGGGCACAGTGGGAGACGAGGGTTTCCTTGCCCTTGGTGGCC 474 consensus_7999#1 ------------------------------------------------------------ consensus_7999#0 TGGGCCAGCTCCGGCAGCCGCTCCCCGAAGCTGTCGCTGGCGTAATGATGCGAGCCGGCG 534 consensus_7999#1 ------------------------------------------------------------ consensus_7999#0 ATGTGCGCGTCGTAGATCCTCTCTTCGTCCCTGACATCGACGACGGCGATCCGGGGGTCC 594 consensus_7999#1 ------------------------------------------------------------ consensus_7999#0 CGGAGCATGGGTACGAGCTGCGCCGCGGAAACGTAGGAGACGCCCCTCGCCATCGCCGCC 654 consensus_7999#1 ------------------------------------------------------------ consensus_7999#0 GCCGCCGGCCGTGTGAGCGATGGCACTCTGTGTTTGATGGGCCTTTCTACTC 706 consensus_7999#1 ---------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||