cluster # 8001

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Oryza sativa
cluster # 8001 cluster # 8001 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8001#0 length = 702 sequences # 3

consensus_8001#1 length = 689 sequences # 2

consensusID : consensus_8001#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 702
fasta sequence

                              [CATGGAGCAAGAGGATTGAAGTAAAGTGCTAGTGCTACATTATACTAAGAATCTAGATTACAATATCCCAAAACCAATACTGAAATTACTGTGATTGGCCAAAATGCCACATACACTTCCAATATCCAAATCCATATAACCCTGCACATCATGGTATACCCCCCTCCCTCTCTTCCTATACCCTATAAATCTTGTAAGATGTTTGGGTTTTCACTAATTAAGCTACCCTATATATACCAATATATACATTGCTCCCATCTTTACATTCCCAAAACCTATAGCCCAATTAAGCTTAATCTGCTTAAGCATTCATGTTTAGGCCTTTTTACCATTTTATTTCTATACAAGCCCTAAATTAATTTGATGGATTAATTGATTGGAATTTTTGCGCTAATTTAATATGTATAATCATATTCGATTCTAGGCCACGAAGTCTCTCATGAGCTGAGCCGCGAAGGACTTTGTGCTCTGCATGTTCATGTCGTAGCCGCCGCCGCCGGCGACGTGGCCGGCGCCGTCGCTGCCGTTGCTGCTGGTCATGAGGAACGACGCCGTCTGCTCGGCGCCGTGCGGGAGGCCGAGCGTGAGCGACACGCCGCCGCCGCCGCCACCGCCGCCGTGGCCGGCGAACGCGAACTGCTCCGTGGCGAACTGCCCGTACGGCGCCGGCGCGAACAGCGAGTAGCCGACGCCGCCATGGTG]

[+] EMBL CB659281             [CATGGAGCAAGAGGATTGAAGTAAAGTGCTAGTGCTACATTATACTAAGAATCTAGATTACAATATCCCAAAACCAATACTGAAATTACTGTGATTGGCCAAAATGCCACATACACTTCCAATATCCAAATCCATATAACCCTGCACATCATGGTATACCCCCCTCCCTCTCTTCCTATACCCTATAAATCTTGTAAGATGTTTGGGTTTTCACTAATTAAGCTACCCTATATATACCAATATATACATTGCTCCCATCTTTACATTCCCAAAACCTATAGCCCAATTAAGCTTAATCTGCTTAAGCATTCATGTTTAGGCCTTTTTACCATTTTATTTCTATACAAGCCCTAAATTAATTTGATGGATTAATTGATTGGAATTTTTGCGCTAATTTAATATGTATAATCATATTCGATTCTAGGCCACGAAGTCTCTCATGAGCTGAGCCGCGAAGGACTTTGTGCTCTGCATGTTCATGTCGTAGCCGCCGCCGCCGGCGACGTGGCCGGCGCCGTCGCTGCCGTTGCTGCTGGTCATGAGGAACGACGCCGTCTGCTCGGCGCCGTGCGGGAGGCCGAGCGTGAGCGACACGCCGCCGCCGCCGCCACCGCCGCCGTGGCCGGCGAACGCGAACTGCTCCGTGGCGAACTGCCCGTACGGCGCCGGCGCGAACAGCGAGTAGCCGACGCCGCCATGGTG]
[-] EMBL AU056600             [       ttttttttTTGAAGTAAAGTGCTAGTGCTACATTATACTAAGAATCTAGATTACAATATCCCAAAACCAATACTGAAATTACTGTGATTGGCCAAAATGCCACATACACTTCCAATATCCAAATCCATATAACCCTGCACATCATGGTATACCCCCCTCCCTCTCTTCCTATACCCTATAAATCTTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CB683563             [                                                                         CCAATACTTAAATTACTGTGATTGGCCAAAATGCCACATACACTTCCAATATCCAAATCCATATAACCCTGCACATCATGGTATACCCCCCTCCCTCTCTTCCTATACCCTATAAATCTTGTAAAATGTTTGGGTTTTCACTAATTAAGCTACCCTATATATACCAATATATACATTGCTCCCATCTTTACATTCCCAAAACCTATAGCCCAATTAAGCTTAATCTGCTTAAGCATTCATGTCTAGGCCTTTTTACCATTTTATTTCTATACAAGCCCTAAATTAATTTGATGGATTAATTGATTGGAATTTTTGCGCTAATTTAATATGTATAATCATATTCGATTCTAGGCCACGAAGTCTCTCATGAGCTGAGCCGCGAAGGACTTTGTGCTCTGCATGTTCATGTCGTAACCGCCGCCGCCGGCGACGTGGCCGGCGCCGTCCCTGCCGTTGCTGCTGGTCATGAGGAACAACCCCGTCTGCTCGGCCCCGTGCGGGAGGCCGAGCGTGAGCGACACGCCGCCGCCGCCGCCACCGCCGCCGTGGCCGGCGAACGCAAACTGCTCCGTGGCGAACTGCCCGTAC                                         ]




>consensus_8001#0
CATGGAGCAAGAGGATTGAAGTAAAGTGCTAGTGCTACATTATACTAAGAATCTAGATTA
CAATATCCCAAAACCAATACTGAAATTACTGTGATTGGCCAAAATGCCACATACACTTCC
AATATCCAAATCCATATAACCCTGCACATCATGGTATACCCCCCTCCCTCTCTTCCTATA
CCCTATAAATCTTGTAAGATGTTTGGGTTTTCACTAATTAAGCTACCCTATATATACCAA
TATATACATTGCTCCCATCTTTACATTCCCAAAACCTATAGCCCAATTAAGCTTAATCTG
CTTAAGCATTCATGTTTAGGCCTTTTTACCATTTTATTTCTATACAAGCCCTAAATTAAT
TTGATGGATTAATTGATTGGAATTTTTGCGCTAATTTAATATGTATAATCATATTCGATT
CTAGGCCACGAAGTCTCTCATGAGCTGAGCCGCGAAGGACTTTGTGCTCTGCATGTTCAT
GTCGTAGCCGCCGCCGCCGGCGACGTGGCCGGCGCCGTCGCTGCCGTTGCTGCTGGTCAT
GAGGAACGACGCCGTCTGCTCGGCGCCGTGCGGGAGGCCGAGCGTGAGCGACACGCCGCC
GCCGCCGCCACCGCCGCCGTGGCCGGCGAACGCGAACTGCTCCGTGGCGAACTGCCCGTA
CGGCGCCGGCGCGAACAGCGAGTAGCCGACGCCGCCATGGTG

consensusID : consensus_8001#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 689
fasta sequence

                              [TGCTAGTGCTACATTATACTAAGAATCTAGATTACAATATCCCAAAACCAATACTGAAATTACTGTGATTGGCCAAAATGCCACATACACTTCCAATATCCAAATCCATATACCCCTGCACATCATGGTATACCCCCCTCCCTCTCTTCCTATACCCTATAAATCTTGTAAGATGTTTGGGTTTTCACTAATTAAGCTACCCTATATATACCAATATATACATTGCTCCCATCTTTACATTCCCAAAACCTATAGCCCAATTAAGCTTAATCTGCTTAAGCATTCATGTCTAGGCCTTTTTACCATTTTATTTCTATACAAGCCCTAAATTAATTTGATGGATTAATTGATTGGAATTTTTGCGCTAATTTAATATGTATAATCATATTCGATTCTAGGCCACGAAGTCTCTCATGAGCTGAGCCGCGAAGGACTTTGTGCTCTGCATGTTCATGTCGTAGCCGCCGCCGCCGCCGCCGCCGCCGGCGACGTGGCCGGCGCCGTCGCTGCCGTTGCTGCTGGTCATGAGGAACGACGCCGTCTGCTCGGCGCCGTGCGGGAGGCCGAGCGTGAGCGACACGCCGCCGCCGCCGCCACCGCCGCCGTGGCCGGCGAACGCGAACTGCTCCGTGGCGAACTGCCCGTACGGCGCCGGCGCGAACAGCGAGTAGCCGACGCCGCCATGGTGT]

[+] EMBL CB632709             [TGCTAGTGCTACATTATACTAAGAATCTAGATTACAATATCCCAAAACCAATACTGAAATTACTGTGATTGGCCAAAATGCCACATACACTTCCAATATCCAAATCCATATACCCCTGCACATCATGGTATACCCCCCTCCCTCTCTTCCTATACCCTATAAATCTTGTAAGATGTTTGGGTTTTCACTAATTAAGCTACCCTATATATACCAATATATACATTGCTCCCATCTTTACATTCCCAAAACCTATAGCCCAATTAAGCTTAATCTGCTTAAGCATTCATGTCTAGGCCTTTTTACCATTTTATTTCTATACAAGCCCTAAATTAATTTGATGGATTAATTGATTGGAATTTTTGCGCTAATTTAATATGTATAATCATATTCGATTCTAGGCCACGAAGTCTCTCATGAGCTGAGCCGCGAAGGACTTTGTGCTCTGCATGTTCATGTCGTAGCCGCCGCCGCCGCCGCCGCCGCCGGCGACGTGGCCGGCGCCGTCGCTGCCGTTGCTGCTGGTCATGAGGAACGACGCCGTCTGCTCGGCGCCGTGCGGGAGGCCGAGCGTGAGCGACACGCCGCCGCCGCCGCCACCGCCGCCGTGGCCGGCGAACGCGAACTGCTCCGTGGCGAACTGCCCGTACGGCGCCGGCGCGAACAGCGAGTAGCCGACGCCGCCATGGTGT]
[+] EMBL CB621269             [TGCTAGTCCTTCATTATACTAAGAATCTAGATTACAATATCCCAAAACCAATACTGAAATTACTGTGATTGGCCAAAATGCCACATACACTTCCAATATCCAAATCCATATACCCCTGCACATCATGGTATACCCCCCTCCCTCTCTTCCTATACCCTATAAATCTTGTAAAATGTTTGGGTTTTCACTAATTAAGCTACCCTATATATACCAATATATACATTGCTCCCATCTTTACATTCCCAAAACCTATAGCCCAATTAAGCTTAATCTGCTTAAGCATTCATGTCTAGGCCTTTTTACCATTTTATTTCTATACAAGCCCTAAATTAATTTGATGGATTAATTGATTGGAATTTTTGCGCTAATTTAATATGTATAATCATATTCGATTCTAGGCCACGAAGTCTCTCATGAGCTGAGCCGCGAAGGACTTTGTGCTCTGCATGTTCATGTCGTAACCGCCGCCGCCGCCGCCGCCGCCGGGGACGTGGCCGGCGCCGTCGCTGCCGTTGCTGCTGGTCATGAGGAACGACGCCGTCTGCTCGGCGCCGTGCGGGAGGCCGAACGTGAGCGACACGCCGCCGCCGCCGCCACCGCCGCCGTGGGCGGCGAACGCGAACTGCTCCGTGGCGAACTGCC                                               ]




>consensus_8001#1
TGCTAGTGCTACATTATACTAAGAATCTAGATTACAATATCCCAAAACCAATACTGAAAT
TACTGTGATTGGCCAAAATGCCACATACACTTCCAATATCCAAATCCATATACCCCTGCA
CATCATGGTATACCCCCCTCCCTCTCTTCCTATACCCTATAAATCTTGTAAGATGTTTGG
GTTTTCACTAATTAAGCTACCCTATATATACCAATATATACATTGCTCCCATCTTTACAT
TCCCAAAACCTATAGCCCAATTAAGCTTAATCTGCTTAAGCATTCATGTCTAGGCCTTTT
TACCATTTTATTTCTATACAAGCCCTAAATTAATTTGATGGATTAATTGATTGGAATTTT
TGCGCTAATTTAATATGTATAATCATATTCGATTCTAGGCCACGAAGTCTCTCATGAGCT
GAGCCGCGAAGGACTTTGTGCTCTGCATGTTCATGTCGTAGCCGCCGCCGCCGCCGCCGC
CGCCGGCGACGTGGCCGGCGCCGTCGCTGCCGTTGCTGCTGGTCATGAGGAACGACGCCG
TCTGCTCGGCGCCGTGCGGGAGGCCGAGCGTGAGCGACACGCCGCCGCCGCCGCCACCGC
CGCCGTGGCCGGCGAACGCGAACTGCTCCGTGGCGAACTGCCCGTACGGCGCCGGCGCGA
ACAGCGAGTAGCCGACGCCGCCATGGTGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8001#0      CATGGAGCAAGAGGATTGAAGTAAAGTGCTAGTGCTACATTATACTAAGAATCTAGATTA 60
consensus_8001#1      --------------------------TGCTAGTGCTACATTATACTAAGAATCTAGATTA 34
                                                **********************************

consensus_8001#0      CAATATCCCAAAACCAATACTGAAATTACTGTGATTGGCCAAAATGCCACATACACTTCC 120
consensus_8001#1      CAATATCCCAAAACCAATACTGAAATTACTGTGATTGGCCAAAATGCCACATACACTTCC 94
                      ************************************************************

consensus_8001#0      AATATCCAAATCCATATAACCCTGCACATCATGGTATACCCCCCTCCCTCTCTTCCTATA 180
consensus_8001#1      AATATCCAAATCCATATACCCCTGCACATCATGGTATACCCCCCTCCCTCTCTTCCTATA 154
                      ****************** *****************************************

consensus_8001#0      CCCTATAAATCTTGTAAGATGTTTGGGTTTTCACTAATTAAGCTACCCTATATATACCAA 240
consensus_8001#1      CCCTATAAATCTTGTAAGATGTTTGGGTTTTCACTAATTAAGCTACCCTATATATACCAA 214
                      ************************************************************

consensus_8001#0      TATATACATTGCTCCCATCTTTACATTCCCAAAACCTATAGCCCAATTAAGCTTAATCTG 300
consensus_8001#1      TATATACATTGCTCCCATCTTTACATTCCCAAAACCTATAGCCCAATTAAGCTTAATCTG 274
                      ************************************************************

consensus_8001#0      CTTAAGCATTCATGTTTAGGCCTTTTTACCATTTTATTTCTATACAAGCCCTAAATTAAT 360
consensus_8001#1      CTTAAGCATTCATGTCTAGGCCTTTTTACCATTTTATTTCTATACAAGCCCTAAATTAAT 334
                      *************** ********************************************

consensus_8001#0      TTGATGGATTAATTGATTGGAATTTTTGCGCTAATTTAATATGTATAATCATATTCGATT 420
consensus_8001#1      TTGATGGATTAATTGATTGGAATTTTTGCGCTAATTTAATATGTATAATCATATTCGATT 394
                      ************************************************************

consensus_8001#0      CTAGGCCACGAAGTCTCTCATGAGCTGAGCCGCGAAGGACTTTGTGCTCTGCATGTTCAT 480
consensus_8001#1      CTAGGCCACGAAGTCTCTCATGAGCTGAGCCGCGAAGGACTTTGTGCTCTGCATGTTCAT 454
                      ************************************************************

consensus_8001#0      GTCGTAGCCGCCGCCGCCG------------GCGACGTGGCCGGCGCCGTCGCTGCCGTT 528
consensus_8001#1      GTCGTAGCCGCCGCCGCCGCCGCCGCCGCCGGCGACGTGGCCGGCGCCGTCGCTGCCGTT 514
                      *******************            *****************************

consensus_8001#0      GCTGCTGGTCATGAGGAACGACGCCGTCTGCTCGGCGCCGTGCGGGAGGCCGAGCGTGAG 588
consensus_8001#1      GCTGCTGGTCATGAGGAACGACGCCGTCTGCTCGGCGCCGTGCGGGAGGCCGAGCGTGAG 574
                      ************************************************************

consensus_8001#0      CGACACGCCGCCGCCGCCGCCACCGCCGCCGTGGCCGGCGAACGCGAACTGCTCCGTGGC 648
consensus_8001#1      CGACACGCCGCCGCCGCCGCCACCGCCGCCGTGGCCGGCGAACGCGAACTGCTCCGTGGC 634
                      ************************************************************

consensus_8001#0      GAACTGCCCGTACGGCGCCGGCGCGAACAGCGAGTAGCCGACGCCGCCATGGTG- 702
consensus_8001#1      GAACTGCCCGTACGGCGCCGGCGCGAACAGCGAGTAGCCGACGCCGCCATGGTGT 689
                      ******************************************************