Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 8005 cluster # 8005       Sequences # 5       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8005#0 length = 1967 sequences # 5  

consensusID : consensus_8005#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1967
fasta sequence
                              [TAGCTAAACCATAGCTAGCTTGCCTACCTCCTCCTCTTCTTCTTCTTCTTCTTCAAAAGCTTCTTCAGAGTGGTGGCGATATCGACTACACACTGTTCTTGGCTACATCGATTGATTGATCAGAGAGAGATATAACGATATCGATCGGATCAGTTAAATAGAGTAATTGATCGATATGGGGAAGCTGGTGAGCAAGAGCTGGCAGGAGTCGAAGCTGCTGTGGCACATCGCGTTCCCGGCCATCCTGACGGCCGTCTTCCAGTTCTCCATCGGCTTCGTCACCGTCGGCTTCGTGGGCCACATCGGCCAGGTCGAGCTCGCCGCCGTCACCGTCGTCGAGAACGTCATCGAGGGCTTCGCCTACGGTGTCCTGCTAGGCATGGGGAGTGCGTTGGAGACGTTGTGCGGGCAGGCGGTGGGTGCTGGGCAGGTGTCCATGCTAGGCGTCTACATCCAACGCTCATGGATCATCTGTGGCGCCACCGCTGTCATCCTCACCCCGACCTACGTCTTCACCGCCGGCATCCTCATAGGGCTTCGCCAGCCCACCGACATCGCCGCCGTTGCCGGCACCTACACCCGTTGGGTCATCCCGCAGCTCTTCGCCTACGCTGCCAACTTCCCTCTCCAGAAGTTCTTTCAATCGCAGAGCAAGGTGTGGGCCATGACGGCCATCTCCGGCATCGCCCTGGCGCTCCACGTTGTGCTCAACTACATCTTCCTCACCCGCCTCGGCCACGGCCTCGTCGCCGCCGCTCTCATCGGCAATGTCACCTGGTGGCTCATCATTCTCGCCCAGTTCATCTACCTCGTCTCCGGCTGCTTCCCGGAGGCTTGGAAGGGGTTCTCCATGCTCGCCTTCAAGAACCTCGCCGCCTTCGTCAAGCTCTCGCTCGCCTCCGCCATCATGCTCTGCTTGGAGCTTTGGTACTACACAGCAGTGCTCATCCTTGTCGGCCTCCTAAAGGATGCCAAACTCCAGGTTGACGTCATGTCTGTCTGCATCAATTACCAGCTCTGGACCTTGATGGTTGCACTGGGCTTCAATGCAGCAGTGAGCGTGAGGGTGTCGAACGAGCTGGGCGCGAACCGGCCGAAGGCGGCCAAG-TTCGCGGTGGCGATGGCGGT-GTCGACGTCGGCGATCGTCGGCGCCGTTTTCATGGCCGTGTTCTTCATTTGGAGGACGCAGCTGCCGCGCTTCTTCAGCGACGACGCCGACGTGGTCCGTGAGTCCGCCAAGCTCGGCTACCTCCTCGCCGCAACCATCTTCCTCAACAGCATCCAGCCCGTCCTCTCTGGTGTGGCGATAGGAGCAGGGTGGCAATCACTCGTGGCGTTCATAAACATAGGCTGCTACTACCTGGTTGGCATCCCACTGGGTGTCCTCTTTGGCTTCAAGCTGAAGCTCGATGCAATGGGGATTTGGGTGGGTATGTCACTTGGCACGCTGCTTCAGACAGCCATACTGGCCTTCATTTCCTTCAGGACAAAATGGGAGAGACAGGCCATGATGGCTGAGGAGAGGATCAGAGAGTGGGGAGGGAGGAACGACGACGCGCTGCCGTCCACGACGACGCCGACGGCTGATGATCATAACGTAGATAGATGATGATGAGATCAGATGGTTAATTATTCCTTCAAATTAATTAAACTTGCAGTTAAATAGTGGAGTTATTTATACACACATCACAAAAGCTGAGTAGGCTTGTAGAATTATTTTGTACAGATTCATATATGGTCTATGTAGAGAGAGAAGCTCGGTTTTTATAGGTGCTAAACCTCAGCTTGAATTTCGTTTTGTCTTGCCTTCCTTTTCTTCCATTTTGGTTGGAAGATGATCAGCTGGAAATTATTGTACTACTGAGGTTCATTTTCACATTGAGGTGATTTTTTGAGCTCCGTAATTATAAAACGTCTCTTTATTTGACAAGGTATCCCACTAGATCAAGGAAAAAAAAAAAAAAAAA]

[+] EMBL AK068484             [TAGCTAAACCATAGCTAGCTTGCCTACCTCCTCCTCTTCTTCTTCTTCTTCTTCAAAAGCTTCTTCAGAGTGGTGGCGATATCGACTACACACTGTTCTTGGCTACATCGATTGATTGATCAGAGAGAGATATAACGATATCGATCGGATCAGTTAAATAGAGTAATTGATCGATATGGGGAAGCTGGTGAGCAAGAGCTGGCAGGAGTCGAAGCTGCTGTGGCACATCGCGTTCCCGGCCATCCTGACGGCCGTCTTCCAGTTCTCCATCGGCTTCGTCACCGTCGGCTTCGTGGGCCACATCGGCCAGGTCGAGCTCGCCGCCGTCACCGTCGTCGAGAACGTCATCGAGGGCTTCGCCTACGGTGTCCTGCTAGGCATGGGGAGTGCGTTGGAGACGTTGTGCGGGCAGGCGGTGGGTGCTGGGCAGGTGTCCATGCTAGGCGTCTACATCCAACGCTCATGGATCATCTGTGGCGCCACCGCTGTCATCCTCACCCCGACCTACGTCTTCACCGCCGGCATCCTCATAGGGCTTCGCCAGCCCACCGACATCGCCGCCGTTGCCGGCACCTACACCCGTTGGGTCATCCCGCAGCTCTTCGCCTACGCTGCCAACTTCCCTCTCCAGAAGTTCTTTCAATCGCAGAGCAAGGTGTGGGCCATGACGGCCATCTCCGGCATCGCCCTGGCGCTCCACGTTGTGCTCAACTACATCTTCCTCACCCGCCTCGGCCACGGCCTCGTCGCCGCCGCTCTCATCGGCAATGTCACCTGGTGGCTCATCATTCTCGCCCAGTTCATCTACCTCGTCTCCGGCTGCTTCCCGGAGGCTTGGAAGGGGTTCTCCATGCTCGCCTTCAAGAACCTCGCCGCCTTCGTCAAGCTCTCGCTCGCCTCCGCCATCATGCTCTGCTTGGAGCTTTGGTACTACACAGCAGTGCTCATCCTTGTCGGCCTCCTAAAGGATGCCAAACTCCAGGTTGACGTCATGTCTGTCTGCATCAATTACCAGCTCTGGACCTTGATGGTTGCACTGGGCTTCAATGCAGCAGTGAGCGTGAGGGTGTCGAACGAGCTGGGCGCGAACCGGCCGAAGGCGGCCAAG TTCGCGGTGGCGATGGCGGT GTCGACGTCGGCGATCGTCGGCGCCGTTTTCATGGCCGTGTTCTTCATTTGGAGGACGCAGCTGCCGCGCTTCTTCAGCGACGACGCCGACGTGGTCCGTGAGTCCGCCAAGCTCGGCTACCTCCTCGCCGCAACCATCTTCCTCAACAGCATCCAGCCCGTCCTCTCTGGTGTGGCGATAGGAGCAGGGTGGCAATCACTCGTGGCGTTCATAAACATAGGCTGCTACTACCTGGTTGGCATCCCACTGGGTGTCCTCTTTGGCTTCAAGCTGAAGCTCGATGCAATGGGGATTTGGGTGGGTATGTCACTTGGCACGCTGCTTCAGACAGCCATACTGGCCTTCATTTCCTTCAGGACAAAACGGGAGAGACAGGCCATGATGGCTGAGGAGAGGATCAGAGAGTGGGGAGGGAGGAACGACGACGCGCTGCCGTCCACGACGACGCCGACGGCTGATGATCATAACGTAGATAGATGATGATGAGATCAGATGGTTAATTATTCCTTCAAATTAATTAAACTTGCAGTTAAATAGTGGAGTTATTTATACACACATCACAAAAGCTGAGTAGGCTTGTAGAATTATTTTGTACAGATTCATATATGGTCTATGTAGAGAGAGAAGCTCGGTTTTTATAGGTGCTAAACCTCAGCTTGAATTTCGTTTTGTCTTGCCTTCCTTTTCTTCCATTTTGGTTGGAAGATGATCAGCTGGAAATTATTGTACTACTGAGGTTCATTTTCACATTGAGGTGATTTTTTGAG                                                                       ]
[+] EMBL AU174560             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CGCCCAGTTCATCTACCTCGTCTCCGGCTGCTTCCCGGAGGCTTGGAAGGGGTTCTCCATGCTCGCCTTCAAGAACCTCGCCGCCTTCGTCAAGCTCTCGCTCGCCTCCGCCATCATGCTCTGCTTGGAGCTTTGGTACTACACAGCAGTGCTCATCCTTGTCGGCCTCCTAAAGGATGCCAAACTCCAGGTTGACGTCATGTCTGTCTGCATCAATTACCAGCTCTGGACCTTGATGGTTGCACTGGGCTTCAATGCAGCAGTGAGCGTGAGGGTGTCGAACGAGCTGGGCGCGAACCGGCCGAAGGCGGCCAAGTTTCGCGGTGGCGATGGCGGTGGTCGACGTCGGCGATCGTCGGCGCCGTTTTCATGGCCGTGTTCTTCATTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CF310705             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CAAGAACCTCGCCGCCTTCGTCAAGCTCTCGCTCGCCTCCGCCATCATGCTCTGCTTGGAGCTTTGGTACTACACAGCAGTGCTCATCCTTGTCGGCCTCCTAAAGGATGCCAAACTCCAGGTTGACGTCATGTCTGTCTGCATCAATTACCAGCTCTGGACCTTGATGGTTGCACTGGGCTTCAATGCAGCAGTGAGCGTGAGGGTGTCGAACGAGCTGGGCGCGAACCGGCCGAAGGCGGCCAAG TTCGCGGTGGCGATGGCGGT GTCGACGTCGGCGATCGTCGGCGCCGTTTTCATGGCCGTGTTCTTCATTTGGAGGACGCAGCTGCCGCGCTTCTTCAGCGACGACGCCGACGTGGTCCGTGAGTCCGCCAAGCTCGGCTACCTCCTCGCCGCAACCATCTTCCTCAACAGCATCCAGCCCGTCCTCTCTGGTGTGGCGATAGGAGCAGGGTGGCAATCACTCGTGGCGTTCATAAACATAGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CF310706             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              AGGAGCAGGGTGGCAATCACTCGTGGCGTTCATAAACATAGGCTGCTACTACCTGGTTGGCATCCCACTGGGTGTCCTCTTTGGCTTCAAGCTGAAGCTCGATGCAATGGGGATTTGGGTGGGTATGTCACTTGGCACGCTGCTTCAGACAGCCATACTGGCCTTCATTTCCTTCAGGACAAAATGGGAGAGACAGGCCATGATGGCTGAGGAGAGGATCAGAGAGTGGGGAGGGAGGAACGACGACGCGCTGCCGTCCACGACGACGCCGACGGCTGATGATCATAACGTAGATAGATGATGATGAGATCAGATGGTTAATTATTCCTTCAAATTAATTAAACTTGCAGTTAAATAGTGGAGTTATTTATACACACATCACAAAAGCTGAGTAGGCTTGTAGAATTATTTTGTACAGATTCATATATGGTCTATGTAGAGAGAGAAGCTCGGTTTTTATAGGTGCTAAACCTCAGCTTGAATTTCGTTTTGTCTTGCCTTCCTTTTCTTCCATTTTGGTTGGAAGATGATCAGCTGGAAATTATTGTACTACTGAGGTTCATTTTCACATTGAGGTGATTTTTTGAGCTCCGTAATTATAAAACGTCTCTTTATTTGACAAGGTATCCCACTAGATCAAGGAAAAAAAAAAAAAAAAA]
[+] EMBL AU174559             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    AGGGTGGCAATCACTCGTGGCGTTCATAAACATAGGCTGCTACTACCTGGTTGGCATCCCACTGGGTGTCCTCTTTGGCTTCAAGCTGAAGCTCGATGCAATGGGGATTTGGGTGGGTATGTCACTTGGCACGCTGCTTCAGACAGCCATACTGGCCTTCATTTCCTTCAGGACAAAATGGGAGAGACAGGCCATGATGGCTGAGGAGAGGATCAGAGAGTGGGGAGGGAGGAACGACGACGCGCTGCCGTCCACGACGACGCCGACGGCTGATGATCATAACGTAGATAGATGATGATGAGATCAGATGGTTAATTATTCCTTCAAATTAATTAAACTTGCAGTTAAATAGTGGAGTTATTTATACACACATCACAAAAGCTGAGTAGGCTTGTAGAATTATTTTGTACAGATTCATATATGGTCTATGTAGAGAGAGAAGCTCGGTTTTTATAaaaaaaaa                                                                                                                                                                                              ]


>consensus_8005#0 TAGCTAAACCATAGCTAGCTTGCCTACCTCCTCCTCTTCTTCTTCTTCTTCTTCAAAAGC TTCTTCAGAGTGGTGGCGATATCGACTACACACTGTTCTTGGCTACATCGATTGATTGAT CAGAGAGAGATATAACGATATCGATCGGATCAGTTAAATAGAGTAATTGATCGATATGGG GAAGCTGGTGAGCAAGAGCTGGCAGGAGTCGAAGCTGCTGTGGCACATCGCGTTCCCGGC CATCCTGACGGCCGTCTTCCAGTTCTCCATCGGCTTCGTCACCGTCGGCTTCGTGGGCCA CATCGGCCAGGTCGAGCTCGCCGCCGTCACCGTCGTCGAGAACGTCATCGAGGGCTTCGC CTACGGTGTCCTGCTAGGCATGGGGAGTGCGTTGGAGACGTTGTGCGGGCAGGCGGTGGG TGCTGGGCAGGTGTCCATGCTAGGCGTCTACATCCAACGCTCATGGATCATCTGTGGCGC CACCGCTGTCATCCTCACCCCGACCTACGTCTTCACCGCCGGCATCCTCATAGGGCTTCG CCAGCCCACCGACATCGCCGCCGTTGCCGGCACCTACACCCGTTGGGTCATCCCGCAGCT CTTCGCCTACGCTGCCAACTTCCCTCTCCAGAAGTTCTTTCAATCGCAGAGCAAGGTGTG GGCCATGACGGCCATCTCCGGCATCGCCCTGGCGCTCCACGTTGTGCTCAACTACATCTT CCTCACCCGCCTCGGCCACGGCCTCGTCGCCGCCGCTCTCATCGGCAATGTCACCTGGTG GCTCATCATTCTCGCCCAGTTCATCTACCTCGTCTCCGGCTGCTTCCCGGAGGCTTGGAA GGGGTTCTCCATGCTCGCCTTCAAGAACCTCGCCGCCTTCGTCAAGCTCTCGCTCGCCTC CGCCATCATGCTCTGCTTGGAGCTTTGGTACTACACAGCAGTGCTCATCCTTGTCGGCCT CCTAAAGGATGCCAAACTCCAGGTTGACGTCATGTCTGTCTGCATCAATTACCAGCTCTG GACCTTGATGGTTGCACTGGGCTTCAATGCAGCAGTGAGCGTGAGGGTGTCGAACGAGCT GGGCGCGAACCGGCCGAAGGCGGCCAAGTTCGCGGTGGCGATGGCGGTGTCGACGTCGGC GATCGTCGGCGCCGTTTTCATGGCCGTGTTCTTCATTTGGAGGACGCAGCTGCCGCGCTT CTTCAGCGACGACGCCGACGTGGTCCGTGAGTCCGCCAAGCTCGGCTACCTCCTCGCCGC AACCATCTTCCTCAACAGCATCCAGCCCGTCCTCTCTGGTGTGGCGATAGGAGCAGGGTG GCAATCACTCGTGGCGTTCATAAACATAGGCTGCTACTACCTGGTTGGCATCCCACTGGG TGTCCTCTTTGGCTTCAAGCTGAAGCTCGATGCAATGGGGATTTGGGTGGGTATGTCACT TGGCACGCTGCTTCAGACAGCCATACTGGCCTTCATTTCCTTCAGGACAAAATGGGAGAG ACAGGCCATGATGGCTGAGGAGAGGATCAGAGAGTGGGGAGGGAGGAACGACGACGCGCT GCCGTCCACGACGACGCCGACGGCTGATGATCATAACGTAGATAGATGATGATGAGATCA GATGGTTAATTATTCCTTCAAATTAATTAAACTTGCAGTTAAATAGTGGAGTTATTTATA CACACATCACAAAAGCTGAGTAGGCTTGTAGAATTATTTTGTACAGATTCATATATGGTC TATGTAGAGAGAGAAGCTCGGTTTTTATAGGTGCTAAACCTCAGCTTGAATTTCGTTTTG TCTTGCCTTCCTTTTCTTCCATTTTGGTTGGAAGATGATCAGCTGGAAATTATTGTACTA CTGAGGTTCATTTTCACATTGAGGTGATTTTTTGAGCTCCGTAATTATAAAACGTCTCTT TATTTGACAAGGTATCCCACTAGATCAAGGAAAAAAAAAAAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)