These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8006#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1067 fasta sequence [GATGCCTCCTGTCCAATCCCCCCATCCCATTCGGTAGTTGGATTGAAGACTACCGAATAAGAGAAGCAGGCAGGCAGACAAACCCTTGAACCAAGGAGTCCTCGCTGAGGAAGCTTTGGATCCACGACGCAGCTATGGCCTCCCCGCCCACCAGGCCGCGCAGCCACAACCAGCTGACTAGGTAGGCTTCCTAGGTCGCATGCATCATCAGATTTCAATCTCCCTTCGTTCCCTGTCCCTAATCCAATACCAATAGGGAGCAATCAGCTGCTCCTCGACGGCGAGGGAGATGTCGTCGGCCGCGGGCCAAGACAACGGAGATACCGCTGGGGACTACATCAAGTGGATGTGCGGCGCCGGTGGCCGTGCGGGCGGCGCCATGGCCAACCTCCAGCGCGGCGTTGGCTCCCTCGTCCGTGACATTGGCGACCCCTGCCTCAACCCATCCCCCGTTAAGGGGAGCAAAATGCTCAAACCGGAAAAATGGCACACATGTTTTGATAATGATGGAAAGGTCATAGGTTTCCGTAAAGCCCTAAAATTCATTGTCTTAGGGGGTGTGGAT-CCCACTATTCGAGCTGAAGTTTGGGAAT-TTCTTCTTGGCTGCTATG-CCTTGAGTAGTACCTCAGAGTATAGGAGGAAACTAAGAGCTGTTAGAAGGGAAA-AATATCAAATT-TTAGTTAG-A-CAGTG-CCAGA-GC-AT-GCACCCAAGCATTGGTACAGGTGA-GCTTGCTTACGCTGTTGGATCAAAGCTAATGGATGTCAGGACTAT-GTCAAAAGAAACCCACATTGCAGAAGAAGTTAGCACAA-GTCAAC-AAACTTCACAAAATACA-GCTGGCAGTTTAGTAGAAGATTCAGATTATGGCCCCGGTGGTGCACAGCAGTCACAAAAAAGGGAAAGCTGTAGTAAATCAGCTGAACTAGTTGGTTTCAACGTACATAATGATACCTCTCTTTATGATTCTTCCAATTTTATTGTGTCTTCTACAGAAGTGAATAATTGCTCAAAAGATTCTCAGGATTTACATGACATGGGTGAACCA-AGATATGACCCTGAGACCAAAAAAAAAA] [+] EMBL CB640211 [GATGCCTCCTGTCCAATCCCCCCATCCCATTCGGTAGTTGGATTGAAGACTACCGAATAAGAGAAGCAGGCAGGCAGACAAACCCTTGAACCAAGGAGTCCTCGCTGAGGAAGCTTTGGATCCACGACGCAGCTATGGCCTCCCCGCCCACCAGGCCGCGCAGCCACAACCAGCTGACTAGGTAGGCTTCCTAGGTCGCATGCATCATCAGATTTCAATCTCCCTTCGTTCCCTGTCCCTAATCCAATACCAATAGGGAGCAATCAGCTGCTCCTCGACGGCGAGGGAGATGTCGTCGGCCGCGGGCCAAGACAACGGAGATACCGCTGGGGACTACATCAAGTGGATGTGCGGCGCCGGTGGCCGTGCGGGCGGCGCCATGGCCAACCTCCAGCGCGGCGTTGGCTCCCTCGTCCGTGACATTGGCGACCCCTGCCTCAACCCATCCCCCGTTAAGGGGAGCAAAATGCTCAAACCGGAAAAATGGC ] [+] EMBL CB640244 [ tgTGAGGCAACTCTGGATCCACGACGCAGATATGGGCTCCCCGCCCACCAGGCCG GCAGGCACAACCAACTGACTAGGTACGCTTCCTATGTCGCATGCATCATCAGATTTCAATCTCCCTTCGTTCCCTGTCCCTAATCCAATACCAATAGGGAGCAATCAGCTGCTCCTCGACGGCGAGGGAGATGTCGTCGGCCGCGGGCCAAGACAACGGAGATACCGCTGGGGACTACATCAAGTGGATGTGCGGCGCCGGTGGCCGTGCGGGCGGCGCCATGGCCAACCTCCAG ] [+] EMBL CB671731 [ CCAATACCAATAGGGAGCAATCAGCTGCTCCTCGACGGCGAGGGAGATGTCGTCGGCCGCGGGCCAAGACAACGGAGATACCGCTGGGGACTACATCAAGTGGATGTGCGGCGCCGGTGGCCGTGCGGGCGGCGCCATGGCCAACCTCCAGCGCGGCGTTGGCTCCCTCGTCCGTGACATTGGCGACCCCTGCCTCAACCCATCCCCCGTTAAGGGGAGCAAAATGCTCAAACCGGAAAAATGGCACACATGTTTTGATAATGATGGAAAGGTCATAGGTTTCCGTAAAGCCCTAAAATTCATTGTCTTAGGGGGTGTGGAT CCCACTATTCGAGCTGAAGTTTGGGAAT TTCTTCTTGGCTGCTATG CCTTGAGTAGTACCTCAGAGTATAGGAGGAAACTAAGAGCTGTTAGAAGGGAAA AATATCAAATT TTAGTTAG A CAGTG CCAGA GC AT GCACCCAAGCATTGGTACAGGTGA GCTTGCTTACGCTGTTGGATCAAAGCTAATGGATGTCAGGACTAT GTCAAAAGAAACCCACATTGCAGAAGAAGTTAGCACAA GTCAAC AAACTTCACAAAATACA GCTGGCAGTTTAGTAGAAGATTCAGATTATGGCCCCGGTGGTGCACAGCAGTCACAAAAAAGGGAAAGCTGTAGTAAATCAGCTGAACTAGTTGGTTTCAACGTACATAATGATACCTCTCTTTATGATTCTTCCAATTTTATTGTGTCTTCTACAGAAGTGAATAATTGCTCAAAAGATTCTCAGGATTTACATGACATGGGTGAACCA AGA ] [+] EMBL BI801861 [ TTA GGGGT TGGATCCCCACTATTCGAGCTGAAGTTTGGGAATGTTCTTCTT GCTGCTATGCCCTTGAGTAGTACCTCAGAGTATAGGAGGAAACTAAGAGCTGTTAGAAGGGAAACAATATCAAATTGTTAGTTAGCACCAGTGCCCAGACGCAATGGCACCCAAGCATTGGTACAGGTGACGCTTGCTTACGCTGTTGGATCAAAGCTAATGGATGTCAGGACTATGGTCCAAAGAAACCCACATTGCAGAAGAAGTTAGCACAACGTCAACTAAACTTCAC AAATACACGCTGGCAGTTTAGTAGAAGATTCAGATTATGGCCCCGGTGGTGCACAGCAGTCAC AAAACGGGAAAGCTGTAGTAAATCAGCTGAACTAGTTGGTTTCAACGTACATAATGATACCTCTCTTTATGATTCTTCCAATTTTATTGTGTCTTCTACAGAAGTGAATAATTGCTCAAAAGATTCTCAGGATTACCATGACATGGGTGAACCACAGATATGACCCTGAGACCAAAAAAAAAA] consensusID : consensus_8006#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 367 fasta sequence [GCCCACCAGGCCGCCAGCCACAACCAGCTGACTAGGTCGCATGCATCATCAGATTTCAATCTCCCTGCGTTCCCTGTCCCTAATCCCATACCGATAGGGAGCAATCAGCTGCTCCTCTACGGCGAGGGAGATGTCCCCCGCCGCGGGCCAAGACAACGGACATACCGCTGGGGACTACATCCAGTGGATGTGCGGCGCCGGTGGCCGTGCGGGCGGCGCCATGGCCAACCTCCAGCGCGGCGTTGGCTCCCTCGTCCGTGACATTGGCGACCCCTGCCTCAACCCATCCCCCGGTAAGGGGAGCAAAATGCTCAAACCGGAAAAATGGCACACATGCTTTGATAATGATGGAAAGGTCATATGTTTC] [+] EMBL CB681515 [GCCCACCAGGCCGCCAGCCACAACCAGCTGACTAGGTCGCATGCATCATCAGATTTCAATCTCCCTGCGTTCCCTGTCCCTAATCCCATACCGATAGGGAGCAATCAGCTGCTCCTCTACGGCGAGGGAGATGTCCCCCGCCGCGGGCCAAGACAACGGACATACCGCTGGGGACTACATCCAGTGGATGTGCGGCGCCGGTGGCCGTGCGGGCGGCGCCATGGCCAACCTCCAGCGCGGCGTTGGCTCCCTCGTCCGTGACATTGGCGACCCCTGCCTCAACCCATCCCCCGGTAAGGGGAGCAAAATGCTCAAACCGGAAAAATGGCACACATGCTTTGATAATGATGGAAAGGTCATATGTTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8006#0 GATGCCTCCTGTCCAATCCCCCCATCCCATTCGGTAGTTGGATTGAAGACTACCGAATAA 60 consensus_8006#1 ------------------------------------------------------------ consensus_8006#0 GAGAAGCAGGCAGGCAGACAAACCCTTGAACCAAGGAGTCCTCGCTGAGGAAGCTTTGGA 120 consensus_8006#1 ------------------------------------------------------------ consensus_8006#0 TCCACGACGCAGCTATGGCCTCCCCGCCCACCAGGCCGCGCAGCCACAACCAGCTGACTA 180 consensus_8006#1 -------------------------GCCCACCAGGCCGC-CAGCCACAACCAGCTGACTA 34 ************** ******************** consensus_8006#0 GGTAGGCTTCCTAGGTCGCATGCATCATCAGATTTCAATCTCCCTTCGTTCCCTGTCCCT 240 consensus_8006#1 GGT-------------CGCATGCATCATCAGATTTCAATCTCCCTGCGTTCCCTGTCCCT 81 *** ***************************** ************** consensus_8006#0 AATCCAATACCAATAGGGAGCAATCAGCTGCTCCTCGACGGCGAGGGAGATGTCGTCGGC 300 consensus_8006#1 AATCCCATACCGATAGGGAGCAATCAGCTGCTCCTCTACGGCGAGGGAGATGTCCCCCGC 141 ***** ***** ************************ ***************** * ** consensus_8006#0 CGCGGGCCAAGACAACGGAGATACCGCTGGGGACTACATCAAGTGGATGTGCGGCGCCGG 360 consensus_8006#1 CGCGGGCCAAGACAACGGACATACCGCTGGGGACTACATCCAGTGGATGTGCGGCGCCGG 201 ******************* ******************** ******************* consensus_8006#0 TGGCCGTGCGGGCGGCGCCATGGCCAACCTCCAGCGCGGCGTTGGCTCCCTCGTCCGTGA 420 consensus_8006#1 TGGCCGTGCGGGCGGCGCCATGGCCAACCTCCAGCGCGGCGTTGGCTCCCTCGTCCGTGA 261 ************************************************************ consensus_8006#0 CATTGGCGACCCCTGCCTCAACCCATCCCCCGTTAAGGGGAGCAAAATGCTCAAACCGGA 480 consensus_8006#1 CATTGGCGACCCCTGCCTCAACCCATCCCCCGGTAAGGGGAGCAAAATGCTCAAACCGGA 321 ******************************** *************************** consensus_8006#0 AAAATGGCACACATGTTTTGATAATGATGGAAAGGTCATAGGTTTCCGTAAAGCCCTAAA 540 consensus_8006#1 AAAATGGCACACATGCTTTGATAATGATGGAAAGGTCATATGTTTC-------------- 367 *************** ************************ ***** consensus_8006#0 ATTCATTGTCTTAGGGGGTGTGGATCCCACTATTCGAGCTGAAGTTTGGGAATTTCTTCT 600 consensus_8006#1 ------------------------------------------------------------ consensus_8006#0 TGGCTGCTATGCCTTGAGTAGTACCTCAGAGTATAGGAGGAAACTAAGAGCTGTTAGAAG 660 consensus_8006#1 ------------------------------------------------------------ consensus_8006#0 GGAAAAATATCAAATTTTAGTTAGACAGTGCCAGAGCATGCACCCAAGCATTGGTACAGG 720 consensus_8006#1 ------------------------------------------------------------ consensus_8006#0 TGAGCTTGCTTACGCTGTTGGATCAAAGCTAATGGATGTCAGGACTATGTCAAAAGAAAC 780 consensus_8006#1 ------------------------------------------------------------ consensus_8006#0 CCACATTGCAGAAGAAGTTAGCACAAGTCAACAAACTTCACAAAATACAGCTGGCAGTTT 840 consensus_8006#1 ------------------------------------------------------------ consensus_8006#0 AGTAGAAGATTCAGATTATGGCCCCGGTGGTGCACAGCAGTCACAAAAAAGGGAAAGCTG 900 consensus_8006#1 ------------------------------------------------------------ consensus_8006#0 TAGTAAATCAGCTGAACTAGTTGGTTTCAACGTACATAATGATACCTCTCTTTATGATTC 960 consensus_8006#1 ------------------------------------------------------------ consensus_8006#0 TTCCAATTTTATTGTGTCTTCTACAGAAGTGAATAATTGCTCAAAAGATTCTCAGGATTT 1020 consensus_8006#1 ------------------------------------------------------------ consensus_8006#0 ACATGACATGGGTGAACCAAGATATGACCCTGAGACCAAAAAAAAAA 1067 consensus_8006#1 ----------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||