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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_801#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1388 fasta sequence
[CGACGAGGAGTTCCAATAAATAGACACAGGGCAGCGCGAAGTGTATCGGCGAGGCAGCGCGAAGCACTAGGCCACTGGCTAGCTGCTGTCGACGCGTAAAGCACTGTCACAGGGAAAAAAAATGCTATCCCACAGTATAGACAGTTGTAAGGAAGACCAAGAACATCTAGCTCTTCTAGATCCTAAGCTTGCCCCGGTGCTACTGTTGGTTGCTTACCGCATTATTGATACAGACGACAAGGGCAACACCGATGATGAATATTGTCCCATAGATGATGAAGAGGAAGAATTAGATCACGGGGATGAAAATTCACATGATGAGGATATCGTTGATAACGATAAGGATGATTGTGACCTTGGGGATGAAGATGACAATCACACGTGCGAAAGAGATTATGATGGAAGCGATGATGCTGGAACGGAGGAAAGTGATGACAGCGATGATCAGGAGGAAGATGACACTCTTTTCTTCTACAGTATAGCTAAAAGAGAATTGCTATCCAAAAGAGTGGATGAATTCGGCATCCACTTATATTGGATAACAGCACAAGGCTGGTTGCTTATGGTGCACCTTGAATTGTATGAAATTTTCCTATGGAGTCCCATCACAAATCAAAAGATCAGCCTACCCTTCGATGAAGACAATTTTCTTGCGAATAATAATGTGGTCAAGTGCTTTCTATCACATAAACCTTCTGATCCAAACTGTATCGTGCTAGTAGTAAATTGCAGGGACACAATGTTCTGGTATTGCCATCCTAAAGGAGACGTATGGTTCAGGCATGAGTACCAATCAAGTATGATTAGTACAGGAGAGGACAGAGAAAATGTTATTGCAACTGTGAAACACCTTACGGCTGTTGGGGGGAGATTCCATGCATATTTAAATCAGGATAAGGCAATTTTGACACTTGAATTCCTGCCAAAGCCAACATTTACAACTACGCCAGTTAAGGATGCACCAGATCCAAGTTATTGGTGCACGTTTTCTACTTGTTTCTTGTTAGAATCAGGTGGAGAGTTGTTCACGTTGTCATTTAAACATCCAATTGAATGTGTTGATAAGGTTATGCAAATTGAAGTTCATAAACTCAATTTATCTCAAAGAATTTGGATGAAAGTTAGCACAATTGATAACAAGGCATTTTTGGTTGACTGTACTGGCTTTGGAGCATCACTCAATGCAGAAGATGTTGGATTGAAGAGGAACTGCATTTACTTTGTAAGACCTAAAGATAAGGGATTATATGTTTATAACATGGAACGAGGAATTACCACCATACACAATCCAGGGGAAGATCTACCAGATAACATTGCACTTGAGATTGTGATGCCTCCATCTTGAATCCTTCATGTTGTACATATGTTATCCTTTTCTTAAGATAATG]
[+] EMBL AK064530 [CGACGAGGAGTTCCAATAAATAGACACAGGGCAGCGCGAAGTGTATCGGCGAGGCAGCGCGAAGCACTAGGCCACTGGCTAGCTGCTGTCGACGCGTAAAGCACTGTCACAGGGAAAAAAAATGCTATCCCACAGTATAGACAGTTGTAAGGAAGACCAAGAACATCTAGCTCTTCTAGATCCTAAGCTTGCCCCGGTGCTACTGTTGGTTGCTTACCGCATTATTGATACAGACGACAAGGGCAACACCGATGATGAATATTGTCCCATAGATGATGAAGAGGAAGAATTAGATCACGGGGATGAAAATTCACATGATGAGGATATCGTTGATAACGATAAGGATGATTGTGACCTTGGGGATGAAGATGACAATCACACGTGCGAAAGAGATTATGATGGAAGCGATGATGCTGGAACGGAGGAAAGTGATGACAGCGATGATCAGGAGGAAGATGACACTCTTTTCTTCTACAGTATAGCTAAAAGAGAATTGCTATCCAAAAGAGTGGATGAATTCGGCATCCACTTATATTGGATAACAGCACAAGGCTGGTTGCTTATGGTGCACCTTGAATTGTATGAAATTTTCCTATGGAGTCCCATCACAAATCAAAAGATCAGCCTACCCTTCGATGAAGACAATTTTCTTGCGAATAATAATGTGGTCAAGTGCTTTCTATCACATAAACCTTCTGATCCAAACTGTATCGTGCTAGTAGTAAATTGCAGGGACACAATGTTCTGGTATTGCCATCCTAAAGGAGACGTATGGTTCAGGCATGAGTACCAATCAAGTATGATTAGTACAGGAGAGGACAGAGAAAATGTTATTGCAACTGTGAAACACCTTACGGCTGTTGGGGGGAGATTCCATGCATATTTAAATCAGGATAAGGCAATTTTGACACTTGAATTCCTGCCAAAGCCAACATTTACAACTACGCCAGTTAAGGATGCACCAGATCCAAGTTATTGGTGCACGTTTTCTACTTGTTTCTTGTTAGAATCAGGTGGAGAGTTGTTCACGTTGTCATTTAAACATCCAATTGAATGTGTTGATAAGGTTATGCAAATTGAAGTTCATAAACTCAATTTATCTCAAAGAATTTGGATGAAAGTTAGCACAATTGATAACAAGGCATTTTTGGTTGACTGTACTGGCTTTGGAGCATCACTCAATGCAGAAGATGTTGGATTGAAGAGGAACTGCATTTACTTTGTAAGACCTAAAGATAAGGGATTATATGTTTATAACATGGAACGAGGAATTACCACCATACACAATCCAGGGGAAGATCTACCAGATAACATTGCACTTGAGATTGTGATGCCTCCATCTTGAATCCTTCATGTTGTACATATGTTATCCTTTTCTTAAGATAATG]
consensusID : consensus_801#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence
[ACTGCAGTGGAGGGAGGTTTTGCNCATATTTAAGTAAGGAGAAGGCAATTGTGACACNTGAGTTCTGCCAAATCCAACATTTACAACTACGCCAGTTAAGGATGCATCAGATCCAATTTATTGGTACACCACTTTTACTAATTGCTTGTTAGAATCTTGTGGAGAGTTGTTCATGTTATCATTTAAACATCCAGTGGTATGTGCTCAGAAGGTTGTGCAGATTGAAGTTCATAAACTCGATTTATCTAGAAGAATTTGGGTGAAAGTTAACACAATTGGTAACAAGGCATTTTTGGTTGAGTGTATTGGCTTTGGATCATCGCTCACTGCAGAAGATGTTGGATTGAAGAGAAACTGCATTTATTTTGTGAGACCTAATGATAAGGGTTTGTATGTTTATGACATGGAACGAGGAACTACTGTAATGCATAATCCAGGGGCAGACCTACCGGATAACATGACACTTCAGATCGTGGTGCCTCCATTTTGAATCGTTCACGCTGGACATATGTTTCCCCCTGTTTTGTCTAATAATGTTCTAATGATACATCTTGAATGTTGGTTGTTTAAATTATTGAATATACATTTCCCTTTGTTATTTTTTCTTTTATTATAAATTATAAGAGAATATTTTTTTCTTTTATTATAAATTATAAGAGAATAATAAGTGATAGAAAAAAAAAAAAAAAAAA]
[-] EMBL CA759177 [ACTGCAGTGGAGGGAGGTTTTGCNCATATTTAAGTAAGGAGAAGGCAATTGTGACACNTGAGTTCTGCCAAATCCAACATTTACAACTACGCCAGTTAAGGATGCATCAGATCCAATTTATTGGTACACCACTTTTACTAATTGCTTGTTAGAATCTTGTGGAGAGTTGTTCATGTTATCATTTAAACATCCAGTGGTATGTGCTCAGAAGGTTGTGCAGATTGAAGTTCATAAACTCGATTTATCTAGAAGAATTTGGGTGAAAGTTAACACAATTGGTAACAAGGCATTTTTGGTTGAGTGTATTGGCTTTGGATCATCGCTCACTGCAGAAGATGTTGGATTGAAGAGAAACTGCATTTATTTTGTGAGACCTAATGATAAGGGTTTGTATGTTTATGACATGGAACGAGGAACTACTGTAATGCATAATCCAGGGGCAGACCTACCGGATAACATGACACTTCAGATCGTGGTGCCTCCATTTTGAATCGTTCACGCTGGACATATGTTTCCCCCTGTTTTGTCTAATAATGTTCTAATGATACATCTTGAATGTTGGTTGTTTAAATTATTGAATATACATTTCCCTTTGTTATTTTTTCTTTTATTATAAATTATAAGAGAATATTTTTTTCTTTTATTATAAATTATAAGAGAATAATAAGTGATAGAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_801#0 CGACGAGGAGTTCCAATAAATAGACACAGGGCAGCGCGAAGTGTATCGGCGAGGCAGCGC 60
consensus_801#1 ------------------------------------------------------------
consensus_801#0 GAAGCACTAGGCCACTGGCTAGCTGCTGTCGACGCGTAAAGCACTGTCACAGGGAAAAAA 120
consensus_801#1 ------------------------------------------------------------
consensus_801#0 AATGCTATCCCACAGTATAGACAGTTGTAAGGAAGACCAAGAACATCTAGCTCTTCTAGA 180
consensus_801#1 ------------------------------------------------------------
consensus_801#0 TCCTAAGCTTGCCCCGGTGCTACTGTTGGTTGCTTACCGCATTATTGATACAGACGACAA 240
consensus_801#1 ------------------------------------------------------------
consensus_801#0 GGGCAACACCGATGATGAATATTGTCCCATAGATGATGAAGAGGAAGAATTAGATCACGG 300
consensus_801#1 ------------------------------------------------------------
consensus_801#0 GGATGAAAATTCACATGATGAGGATATCGTTGATAACGATAAGGATGATTGTGACCTTGG 360
consensus_801#1 ------------------------------------------------------------
consensus_801#0 GGATGAAGATGACAATCACACGTGCGAAAGAGATTATGATGGAAGCGATGATGCTGGAAC 420
consensus_801#1 ------------------------------------------------------------
consensus_801#0 GGAGGAAAGTGATGACAGCGATGATCAGGAGGAAGATGACACTCTTTTCTTCTACAGTAT 480
consensus_801#1 ------------------------------------------------------------
consensus_801#0 AGCTAAAAGAGAATTGCTATCCAAAAGAGTGGATGAATTCGGCATCCACTTATATTGGAT 540
consensus_801#1 ------------------------------------------------------------
consensus_801#0 AACAGCACAAGGCTGGTTGCTTATGGTGCACCTTGAATTGTATGAAATTTTCCTATGGAG 600
consensus_801#1 ------------------------------------------------------------
consensus_801#0 TCCCATCACAAATCAAAAGATCAGCCTACCCTTCGATGAAGACAATTTTCTTGCGAATAA 660
consensus_801#1 ------------------------------------------------------------
consensus_801#0 TAATGTGGTCAAGTGCTTTCTATCACATAAACCTTCTGATCCAAACTGTATCGTGCTAGT 720
consensus_801#1 ------------------------------------------------------------
consensus_801#0 AGTAAATTGCAGGGACACAATGTTCTGGTATTGCCATCCTAAAGGAGACGTATGGTTCAG 780
consensus_801#1 ------------------------------------------------------------
consensus_801#0 GCATGAGTACCAATCAAGTATGATTAGTACAGGAGAGGACAGAGAAAATGTTATTGCAAC 840
consensus_801#1 ------------------------------------------------------------
consensus_801#0 TGTGAAACACCTTACGGCTGTTGGGGGGAGATTCCATGCATATTTAAATCAGGATAAGGC 900
consensus_801#1 -------------ACTGCAGT-GGAGGGAGGTTTTGCNCATATTTAAGTAAGGAGAAGGC 46
** ** ** ** ***** ** ********* * **** *****
consensus_801#0 AATTTTGACACTTGAATTCCTGCCAAAGCCAACATTTACAACTACGCCAGTTAAGGATGC 960
consensus_801#1 AATTGTGACACNTGAGTTC-TGCCAAATCCAACATTTACAACTACGCCAGTTAAGGATGC 105
**** ****** *** *** ******* ********************************
consensus_801#0 ACCAGATCCAAGTTATTGGTGCACGTTTTCTACTTGTTTCTTGTTAGAATCAGGTGGAGA 1020
consensus_801#1 ATCAGATCCAATTTATTGGTACACCACTTTTACTAATTGCTTGTTAGAATCTTGTGGAGA 165
* ********* ******** *** ** **** ** ************ *******
consensus_801#0 GTTGTTCACGTTGTCATTTAAACATCCAATTGAATGTGTTGATAAGGTTATGCAAATTGA 1080
consensus_801#1 GTTGTTCATGTTATCATTTAAACATCCAGTGGTATGTGCTCAGAAGGTTGTGCAGATTGA 225
******** *** *************** * * ***** * * ****** **** *****
consensus_801#0 AGTTCATAAACTCAATTTATCTCAAAGAATTTGGATGAAAGTTAGCACAATTGATAACAA 1140
consensus_801#1 AGTTCATAAACTCGATTTATCTAGAAGAATTTGGGTGAAAGTTAACACAATTGGTAACAA 285
************* ******** ********** ********* ******** ******
consensus_801#0 GGCATTTTTGGTTGACTGTACTGGCTTTGGAGCATCACTCAATGCAGAAGATGTTGGATT 1200
consensus_801#1 GGCATTTTTGGTTGAGTGTATTGGCTTTGGATCATCGCTCACTGCAGAAGATGTTGGATT 345
*************** **** ********** **** **** ******************
consensus_801#0 GAAGAGGAACTGCATTTACTTTGTAAGACCTAAAGATAAGGGATTATATGTTTATAACAT 1260
consensus_801#1 GAAGAGAAACTGCATTTATTTTGTGAGACCTAATGATAAGGGTTTGTATGTTTATGACAT 405
****** *********** ***** ******** ******** ** ********* ****
consensus_801#0 GGAACGAGGAATTACCACCATACACAATCCAGGGGAAGATCTACCAGATAACATTGCACT 1320
consensus_801#1 GGAACGAGGAACTACTGTAATGCATAATCCAGGGGCAGACCTACCGGATAACATGACACT 465
*********** *** ** ** ********** *** ***** ******** ****
consensus_801#0 TGAGATTGTGATGCCTCCATCTTGAATCCTTCATGTTGTACATATGTTATCCTTTTCTTA 1380
consensus_801#1 TCAGATCGTGGTGCCTCCATTTTGAATCGTTCACGCTGGACATATGTTTCCCCCTGTTTT 525
* **** *** ********* ******* **** * ** ********* ** * **
consensus_801#0 AGATAATG---------------------------------------------------- 1388
consensus_801#1 GTCTAATAATGTTCTAATGATACATCTTGAATGTTGGTTGTTTAAATTATTGAATATACA 585
****
consensus_801#0 ------------------------------------------------------------
consensus_801#1 TTTCCCTTTGTTATTTTTTCTTTTATTATAAATTATAAGAGAATATTTTTTTCTTTTATT 645
consensus_801#0 -----------------------------------------------
consensus_801#1 ATAAATTATAAGAGAATAATAAGTGATAGAAAAAAAAAAAAAAAAAA 692
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||