These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8012#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 466 fasta sequence [GTGGAATTGAAGAAGATGGGGACGATGAGGAGGGTGGTGAAGGAGAAGAGGTTCTGGGTCGCCTCCTTCCTCCTCGTCTGGGCTGCCGCGCTCCAGGGGCACATGATGTGGATGCAGCGCCAGGACGCCTTCAAGCAAAAGTTCCCCTCCAACTCCAACCACGACGACGACCTCGCCGGCGCCGACTCCTAGCTAGGCAGCTACTCCTTCCATTCCATCCCATCTAGGGCTTACTGTACTACCCCAGTAGTGGAGCTCCTCCCCTCTACAGTAGTACTTAC-TTTCTTCTTCATCACTTGATGGGTAGTAGTACTCCGTAGTAGCTAATGATCGTTTGAAAACG-AGTACTACGTG-TTTGATGAATCGCCTGNCTGCCTAATTGAATTGCTTCTTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL OS1321608 [GTGGAATTGAAGAAGATGGGGACGATGAGGAGGGTGGTGAAGGAGAAGAGGTTCTGGGTCGCCTCCTTCCTCCTCGTCTGGGCTGCCGCGCTCCAGGGGCACATNATGTGGATGCAGCGCCAGGACGCCTTCAAGCAAAANTTCCCCTCCAACTCCAACCACGACGACGACCTCGCCGGCGCCGACTCCTAGCTAGGCAGCTACTCCTTCCATTCCATCCCATCTAGGGCTTACTGTACTACCCCAGTAGTGGAGCTCCTNCCCTCTACAGTAGTACTTACTTTTCTTCTTCATCACTTGATGGGTAGTAGTACTNCGTAGTAGCTAATGATCGTTTGAAAAAG AGTACTACGTGNTTTGA ] [+] EMBL AU030099 [ GAGGTTCTGGGTCGCCTCCTTCCTCCTCGTCTGGGCTGC CGCTCCAGGGGCACATGATGTGGATGCAGCGCCAGGACGCCTTCAAGCAAAAGTTCCCCTCCAACTCCAACCACGACGACGACCTCGCCGGCGCCGACTCCTAGCTAGGCAGCTACTCCTTCCATTCCATCCCATCTAGGGCTTACTGTACTACCCCAGTAGTGGAGCTCCTCCCCTCTACAGTAGTACTTAC TTTCTTCTTCATCACTTGATGGGTAGTAGTACTCCGTAGTAGCTAATGATCGTTTGAAAACGAAGTACTACGTG TTTGATGAATCGCCTGNCTGCCT ] [+] EMBL AU164471 [ TTCCTCCTCGTCTGGGCTGCCGCGCTCCAGGGGCACATGATGTGGATGCAGCGCCAGGACGCCTTCAAGCAAAAGTTCCCCTCCAACTCCAACCACGACGACGACCTCGCCGGCGCCGACTCCTAGCTAGGCAGCTACTCCTTCCATTCCATCCCATCTAGGGCTTACTGTACTACCCCAGTAGTGGAGCTCCTCCCCTCTACAGTAGTACTTAC TTTCTTCTTCATCACTTGATGGGTAGTAGTACTCCGTAGTAGCTAATGATCG TTGAAAACG AGTACTACGTG TTTGATGAATCGCCTGCCTGCCTAATTGAATTGCTTCTTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_8012#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 442 fasta sequence [AAGTTGGTGGAATTGAAGAAGATGGGGACGATGAGGAGGGTGGTGAAGGAGAAGAGCTTCTGGTCAGCCTCCTTCCTCCTCGTCTGGGCTGCCGCGCTCCAGGGGCACATGATGTGGATGCAGCGCCAGGACGCCTTCAAGCATAAAGGTTCCCACGTCCAAAACGTCCAACCACGACGACGACCGTCGCCGGCGCCGACTCCCTAGCGTAGGCAAGCGTACGTCCGTGTCACAAGTTCCAATCCCAGTCTAGGGCCCTTACTGTACTACACCCAGTAGTGGAGCGTCCGTCCCCGTCTACAGGTAGGTACGTTACTTTCGTTCGTTCAGTCACAGTTGATGGGTAGTAGTACTCCGTAGTAGCTAATGATCGTTGAAAACGAGTACTACGTGTTTGATGAATCGCCTGCCTGCCTAATTGAATTGCTTCTTACATAAAAAA] [+] EMBL BI803756 [AAGTTGGTGGAATTGAAGAAGATGGGGACGATGAGGAGGGTGGTGAAGGAGAAGAGCTTCTGGTCAGCCTCCTTCCTCCTCGTCTGGGCTGCCGCGCTCCAGGGGCACATGATGTGGATGCAGCGCCAGGACGCCTTCAAGCATAAAGGTTCCCACGTCCAAAACGTCCAACCACGACGACGACCGTCGCCGGCGCCGACTCCCTAGCGTAGGCAAGCGTACGTCCGTGTCACAAGTTCCAATCCCAGTCTAGGGCCCTTACTGTACTACACCCAGTAGTGGAGCGTCCGTCCCCGTCTACAGGTAGGTACGTTACTTTCGTTCGTTCAGTCACAGTTGATGGGTAGTAGTACTCCGTAGTAGCTAATGATCGTTGAAAACGAGTACTACGTGTTTGATGAATCGCCTGCCTGCCTAATTGAATTGCTTCTTACATAAAAAA] consensusID : consensus_8012#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 378 fasta sequence [CGGAAGGAGAAGNGGTTCTGGGTCGCCTCCTTCCTCCTCGTCTGGGCTGCCGCTCCAGGGGCACATGATGTGGATGCAGCGCCAGGACGCCTTCAAGCAAAAGTTCCCCTCCAACTCCAACCACGACGACGACCTCGCCGGCGCCGACTCCTAGCTAGGCAGCTACTCCTTCCATTCCATCCCATCTAGGGCTTACTGTACTNCCCCAGTNGTGGNGCTCCTCCCCTCTACAGTAGTACTTACTTTCTTCTTCATCACTTGATGGGTAGTAGTACTCCGTAGTAGNTNATGATCGTTGAAAACGAGTACTACGTGTTTGCTNNTTTTNNTGNNTNNNTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU030100 [CGGAAGGAGAAGNGGTTCTGGGTCGCCTCCTTCCTCCTCGTCTGGGCTGCCGCTCCAGGGGCACATGATGTGGATGCAGCGCCAGGACGCCTTCAAGCAAAAGTTCCCCTCCAACTCCAACCACGACGACGACCTCGCCGGCGCCGACTCCTAGCTAGGCAGCTACTCCTTCCATTCCATCCCATCTAGGGCTTACTGTACTNCCCCAGTNGTGGNGCTCCTCCCCTCTACAGTAGTACTTACTTTCTTCTTCATCACTTGATGGGTAGTAGTACTCCGTAGTAGNTNATGATCGTTGAAAACGAGTACTACGTGTTTGCTNNTTTTNNTGNNTNNNTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8012#0 ------GTGGAATTGAAGAAGATGGGGACGATGAGGAGGGTGGTGAAGGAGAAGAGGTTC 54 consensus_8012#2 ------------------------------------------CGGAAGGAGAAGNGGTTC 18 consensus_8012#1 AAGTTGGTGGAATTGAAGAAGATGGGGACGATGAGGAGGGTGGTGAAGGAGAAGAGCTTC 60 ********** * *** consensus_8012#0 TGGGTCGCCTCCTTCCTCCTCGTCTGGGCTGCCGCGCTCCAGGGGCACATGATGTGGATG 114 consensus_8012#2 TGGGTCGCCTCCTTCCTCCTCGTCTGGGCTGCCG--CTCCAGGGGCACATGATGTGGATG 76 consensus_8012#1 TGGTCAGCCTCCTTCCTCCTCGTCTGGGCTGCCGCGCTCCAGGGGCACATGATGTGGATG 120 *** **************************** ************************ consensus_8012#0 CAGCGCCAGGACGCCTTCAAGCA-AAAGTTCCCC---TCCAAC---TCCAACCACGACGA 167 consensus_8012#2 CAGCGCCAGGACGCCTTCAAGCA-AAAGTTCCCC---TCCAAC---TCCAACCACGACGA 129 consensus_8012#1 CAGCGCCAGGACGCCTTCAAGCATAAAGGTTCCCACGTCCAAAACGTCCAACCACGACGA 180 *********************** **** * *** ***** ************** consensus_8012#0 CGACC-TCGCCGGCGCCGACTCC-TAGC-TAGGCAGCTACTCCTTCC--------ATTCC 216 consensus_8012#2 CGACC-TCGCCGGCGCCGACTCC-TAGC-TAGGCAGCTACTCCTTCC--------ATTCC 178 consensus_8012#1 CGACCGTCGCCGGCGCCGACTCCCTAGCGTAGGCAAGCGTACGTCCGTGTCACAAGTTCC 240 ***** ***************** **** ****** * * * **** consensus_8012#0 A-TCCCA-TCTAGGGC--TTACTGTACTAC-CCCAGTAGTGGAGCTCCT---CCCCTCTA 268 consensus_8012#2 A-TCCCA-TCTAGGGC--TTACTGTACTNC-CCCAGTNGTGGNGCTCCT---CCCCTCTA 230 consensus_8012#1 AATCCCAGTCTAGGGCCCTTACTGTACTACACCCAGTAGTGGAGCGTCCGTCCCCGTCTA 300 * ***** ******** ********** * ****** **** ** * *** **** consensus_8012#0 CAGT--AGTAC-TTACTTTCTTC--TTCA-TCAC--TTGATGGGTAGTAGTACTCCGTAG 320 consensus_8012#2 CAGT--AGTAC-TTACTTTCTTC--TTCA-TCAC--TTGATGGGTAGTAGTACTCCGTAG 282 consensus_8012#1 CAGGTAGGTACGTTACTTTCGTTCGTTCAGTCACAGTTGATGGGTAGTAGTACTCCGTAG 360 *** **** ******** * **** **** ************************ consensus_8012#0 TAGCTAATGATCGTTTGAAAACGAGTACTACGTGTTTGATGAATCGCCTGNCTGCCTAAT 380 consensus_8012#2 TAGNTNATGATCGTT-GAAAACGAGTACTACGTGTTTGCTNNTTTTNNTGNNTNNNTAA- 340 consensus_8012#1 TAGCTAATGATCGTT-GAAAACGAGTACTACGTGTTTGATGAATCGCCTGCCTGCCTAAT 419 *** * ********* ********************** * * ** * *** consensus_8012#0 TGAATTGCTTCTTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 440 consensus_8012#2 ---------------AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA------- 378 consensus_8012#1 TGAATTGCTTCTTACATAAAAAA------------------------------------- 442 * ****** consensus_8012#0 AAAAAAAAAAAAAAAAAAAAAAAAAA 466 consensus_8012#2 -------------------------- consensus_8012#1 -------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||