These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8014#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1226 fasta sequence [GCCGTTTGTCTCACTACAACCTCGTCTTCTTCGTCTTCCTCCCCGTCGAGAATCCCGCAGCCGCGGCAAAGGCCACCATGAGAGCCGCCGCCATCCAGACCCACGCCCTCGTATGCGCGCCACCGGGGGCCGCCGCCGCCGCGCTGGCCCCATGGCCGCGGCGCGCTGCCGGCGGCGGCGGGGGAGGACCCCTCCTCCACCACCACCGGCTGAGGAGCGACCTGCCCCACACGCGCTCCCTCCCCTGCCGGGCTCGCTCGCCGTCGTCCTCCTCGTCGTCGAATGTGAATTCTGGGAGAGGGGACGACGCGGACAACCTGCTCGAGGATTTGCTCAGCAAGCATGGCGAGGTGGTGTACAACGCCGGTGGGGCTCCGGGCATTGATGCCGACGATGACGCCGAGTGCTTGTCCTTTGCTGTCTCCCTAGCTAAAGTTGCAAGCGAGGTGAAGGCTGCGGATATTCGTGTACTATTTGTGAAGCCGCTCGTTTACTGGACGAGGTTCTTCATCATCCTCACTGCTTTCTCAAATGCACAGATTGATGCTATCAGCTCCAAGATGAGAGACATCGGTGAGAAGCAGTTTAGCATAGTTGCATCTGGTGATACAAAACCAAATTCATGGACCTTGCTGGACTTCGGCGATGTTGTTGTCCATATATTTCTTCCGCAACAGCGAGCATTCTACAACTTGGAAGAG-TTC-TA-TGGC-AACGCAACCT-CCATTGAACTCC-CTTTTGAGAAGCA--GTTGCA-GTGACTGCT-GT-TTTCATCTTCTCCTGGAGAAATTGCAGGTTTCCACAAAAACCGAGCAGCATTGCGCCATGGATTCTCCACGTCTTCCTGCTCATATGTGACGAACTGCTCGGAGCTATAGATTTGCATGGTCTAACTCGCCA-ATGTCACCTGGTGACTGCTCGCCAAGTTCAGAAGTGGGGCACCA-TGATGCCAACATTCTCCTTATCTGTTGTTAGACTACGTGAATCATTGTATTAACTATCACATTAGAGACGATAATTATTGGTGCCAAGAGGAGTAGAGGCCAAGATGTAACACATTGTGCCAGTTCAGATTTCAGACGCGAGGATGCAGTGTGCAAGTTCAACTTAGGCATCCTTTGGAATGAAGGAATTTCAAGGGATCTTTGTAGTATTTGGACTAAATTCTATCAAAATCCAGTAAAATTACTCCGCGGTAAAATTACTTGGTCGAATCCTGAAAAAAAAAAAAA] [+] EMBL AK065737 [GCCGTTTGTCTCACTACAACCTCGTCTTCTTCGTCTTCCTCCCCGTCGAGAATCCCGCAGCCGCGGCAAAGGCCACCATGAGAGCCGCCGCCATCCAGACCCACGCCCTCGTATGCGCGCCACCGGGGGCCGCCGCCGCCGCGCTGGCCCCATGGCCGCGGCGCGCTGCCGGCGGCGGCGGGGGAGGACCCCTCCTCCACCACCACCGGCTGAGGAGCGACCTGCCCCACACGCGCTCCCTCCCCTGCCGGGCTCGCTCGCCGTCGTCCTCCTCGTCGTCGAATGTGAATTCTGGGAGAGGGGACGACGCGGACAACCTGCTCGAGGATTTGCTCAGCAAGCATGGCGAGGTGGTGTACAACGCCGGTGGGGCTCCGGGCATTGATGCCGACGATGACGCCGAGTGCTTGTCCTTTGCTGTCTCCCTAGCTAAAGTTGCAAGCGAGGTGAAGGCTGCGGATATTCGTGTACTATTTGTGAAGCCGCTCGTTTACTGGACGAGGTTCTTCATCATCCTCACTGCTTTCTCAAATGCACAGATTGATGCTATCAGCTCCAAGATGAGAGACATCGGTGAGAAGCAGTTTAGCATAGTTGCATCTGGTGATACAAAACCAAATTCATGGACCTTGCTGGACTTCGGCGATGTTGTTGTCCATATATTTCTTCCGCAACAGCGAGCATTCTACAACTTGGAAGAG TTC TA TGGC AACGCAACCT CCATTGAACTCC CTTTTGAGAAGCA GTTGCA GTGACTGCT GT TTTCATCTTCTCCTGGAGAAATTGCAGGTTTCCACAAAAACCGAGCAGCATTGCGCCATGGATTCTCCACGTCTTCCTGCTCATATGTGACGAACTGCTCGGAGCTATAGATTTGCATGGTCTAACTCGCCA ATGTCACCTGGTGACTGCTCGCCAAGTTCAGAAGTGAGGCACCA TGATGCCAACATTCTCCTTATCTGTTGTTAGACTACGTGAATCATTGTATTAACTATCACATTAGAGACGATAATTATTGGTGCCAAGAGGAGTAGAGGCCAAGATGTAACACATTGTGCCAGTTCAGATTTCAGACGCGAGGATGCAGTGTGCAAGTTCAACTTAGGCATCCTTTGGAATGAAGGAATTTCAAGGGATCTTTGTAGTATTTGGACT ] [+] EMBL BE228948 [ ATGACGCCGAGTGCTTGTCCTTTGCTGTCTCCCTAGCTAAAGTTGCAAGCGAAGTGAANGNTGNGGATATNCNTGTACTATTTGTGAAGCCGCTCGTNTANTGGACGAGGTTCTTCATCATCCTCACTGCTTTCTCNAATGCACAGATNGATGCTATCNNCTCCTAGATGAGAGACATCGGTGAGAAGCAGTTTAGCATAGTTGCATCTGGTGATACAAAACCAAATTCATGGACCTTGCTGGACTTCGGCGATGTTGTTGTCCATATATTTCNTCCGCAACAGCGAGCATTCTACAACTTGGAAGAA TTC TA TGGC AACGCAACCT CCANTGAACTCC CTTTTGAGAAGCA GTTGCA GTGACTGCT GT TTTCATCTTCTCCTGGAGAAATTGCAGGTTTCCACAAAAACCGAGCAGCATTGCGCCATGGATTCTCCACGTCTTCCTGCTCATATGTGACGAACTGCTCGGANCTATAGATTTGCATGGTCTAACTCGCCA ATGTC CCTGGTGACTGCTC CCAAGTTCAGAAGTGGGG CCA TGATGCC ACATTCTCCTTATCTGTTGTTAGACTACGT ] [+] EMBL BI813463 [ GGAAGAGTTTCGTATTGGCAAACCAAACCTCCCGTTGAACTCCACTTTTGAGAAGCACGGTTGCACGTGACTGCTGGTGTGTCATCTTCTCCTGGAGAAATTGCAGGTTTCC CACAAACCGAGCAGCATTGCGCCATGGATTCTCCACGTCTTCCTGCTCATATGTGACGAACTGCTCGGAGCTATAGATTTGCATGGTCTAACTCGCCACATGTCACCTGGTGACTGCTCGCCAAGTTCAGAAGTGGGGCACCACTGATGCCCACATTCTCCTTATCTGTTGTTAGACTACGTGAATCATTGTATTAACTATCACATTAGAGACGATAATTATTGGTGCCAAGAGGAATAGAGGCCAAGATGTAACACATTGTGCCAGTTCAGATTTCAGACGCGAGGATGCAGTGTGCAAGTTCAAaaaaaaaa ] [+] EMBL CA754009 [ ATTAACTATCACATTAGAGACGATAATTATTGGTGCCAAGAGGAGTAGAGGCCAAGATGTAACACATTGTGCCAGTTCAGATTTCAGACGCGAGGATGCAGTGTGCAAGTTCAACTTAGGCATCCTTTGGAATGAAGGAATTTCAAGGGATCTTTGTAGTATTTGGACTAAATTCTATCAAAATCCAGTAAAATTACTCCGCGGTAAAATTACTTGGTCGAATCCTGAAAAAAAAAAAAA] consensusID : consensus_8014#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 668 fasta sequence [GTCCTNTGCTGTCTCCCTAGCTAAAGTTGCAAGCGAGGTGAAGGCTGCGGATATTCGTGTACTATTTGTGAAGCCGCTCGTNTACTGGACGAGGTTCTTCATCATCCTCACTGCTTTCTCAAATGCACAGATTGATGCTATCAGCTCCAAGATGAGAGACATCGGTGAGAAGCAGTTTAGCATAGTTGCATCTGGTGATACAAAACCAAATTCATGGACCTTGCTGGACTTTGGCGATGTTGTTGTCCATATATTTCTTCCGCAACAGCGAGCATTTTACAACTTGGAAGAGTTCTATGGCAACGCAACCTCCATTGAACTCCCTTTTGAGAAGCAGTTGCAGTGACTGCTGTTTTCATCTTCTCCTGGAGAAATTGCAGGTTTCCACAAAAACCGAGCAGCATTGCGCCATGGATTCTCCACGTCTTCCTGCTTATATGTGACGAACTGCTTGGAGCTATAGATTTGCATGGTCTAACTCGCCAATGTCACCTGGTGACTGCTCGCCAAGTTCAGAAGTGGGGCACCATGATGCCAACATTCTCCTTATCTGTTGTTAGACTACGTGAATCATTGTATTAACTATCACATTAGAGACGACAATTATTGGTGCCAAGAGGAATAGAGGCCAAGATGTAACACATTGTGCCAGTTCAAAAAAAAAAAAA] [-] EMBL CA759990 [GTCCTNTGCTGTCTCCCTAGCTAAAGTTGCAAGCGAGGTGAAGGCTGCGGATATTCGTGTACTATTTGTGAAGCCGCTCGTNTACTGGACGAGGTTCTTCATCATCCTCACTGCTTTCTCAAATGCACAGATTGATGCTATCAGCTCCAAGATGAGAGACATCGGTGAGAAGCAGTTTAGCATAGTTGCATCTGGTGATACAAAACCAAATTCATGGACCTTGCTGGACTTTGGCGATGTTGTTGTCCATATATTTCTTCCGCAACAGCGAGCATTTTACAACTTGGAAGAGTTCTATGGCAACGCAACCTCCATTGAACTCCCTTTTGAGAAGCAGTTGCAGTGACTGCTGTTTTCATCTTCTCCTGGAGAAATTGCAGGTTTCCACAAAAACCGAGCAGCATTGCGCCATGGATTCTCCACGTCTTCCTGCTTATATGTGACGAACTGCTTGGAGCTATAGATTTGCATGGTCTAACTCGCCAATGTCACCTGGTGACTGCTCGCCAAGTTCAGAAGTGGGGCACCATGATGCCAACATTCTCCTTATCTGTTGTTAGACTACGTGAATCATTGTATTAACTATCACATTAGAGACGACAATTATTGGTGCCAAGAGGAATAGAGGCCAAGATGTAACACATTGTGCCAGTTCAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8014#0 GCCGTTTGTCTCACTACAACCTCGTCTTCTTCGTCTTCCTCCCCGTCGAGAATCCCGCAG 60 consensus_8014#1 ------------------------------------------------------------ consensus_8014#0 CCGCGGCAAAGGCCACCATGAGAGCCGCCGCCATCCAGACCCACGCCCTCGTATGCGCGC 120 consensus_8014#1 ------------------------------------------------------------ consensus_8014#0 CACCGGGGGCCGCCGCCGCCGCGCTGGCCCCATGGCCGCGGCGCGCTGCCGGCGGCGGCG 180 consensus_8014#1 ------------------------------------------------------------ consensus_8014#0 GGGGAGGACCCCTCCTCCACCACCACCGGCTGAGGAGCGACCTGCCCCACACGCGCTCCC 240 consensus_8014#1 ------------------------------------------------------------ consensus_8014#0 TCCCCTGCCGGGCTCGCTCGCCGTCGTCCTCCTCGTCGTCGAATGTGAATTCTGGGAGAG 300 consensus_8014#1 ------------------------------------------------------------ consensus_8014#0 GGGACGACGCGGACAACCTGCTCGAGGATTTGCTCAGCAAGCATGGCGAGGTGGTGTACA 360 consensus_8014#1 ------------------------------------------------------------ consensus_8014#0 ACGCCGGTGGGGCTCCGGGCATTGATGCCGACGATGACGCCGAGTGCTTGTCCTTTGCTG 420 consensus_8014#1 -------------------------------------------------GTCCTNTGCTG 11 ***** ***** consensus_8014#0 TCTCCCTAGCTAAAGTTGCAAGCGAGGTGAAGGCTGCGGATATTCGTGTACTATTTGTGA 480 consensus_8014#1 TCTCCCTAGCTAAAGTTGCAAGCGAGGTGAAGGCTGCGGATATTCGTGTACTATTTGTGA 71 ************************************************************ consensus_8014#0 AGCCGCTCGTTTACTGGACGAGGTTCTTCATCATCCTCACTGCTTTCTCAAATGCACAGA 540 consensus_8014#1 AGCCGCTCGTNTACTGGACGAGGTTCTTCATCATCCTCACTGCTTTCTCAAATGCACAGA 131 ********** ************************************************* consensus_8014#0 TTGATGCTATCAGCTCCAAGATGAGAGACATCGGTGAGAAGCAGTTTAGCATAGTTGCAT 600 consensus_8014#1 TTGATGCTATCAGCTCCAAGATGAGAGACATCGGTGAGAAGCAGTTTAGCATAGTTGCAT 191 ************************************************************ consensus_8014#0 CTGGTGATACAAAACCAAATTCATGGACCTTGCTGGACTTCGGCGATGTTGTTGTCCATA 660 consensus_8014#1 CTGGTGATACAAAACCAAATTCATGGACCTTGCTGGACTTTGGCGATGTTGTTGTCCATA 251 **************************************** ******************* consensus_8014#0 TATTTCTTCCGCAACAGCGAGCATTCTACAACTTGGAAGAGTTCTATGGCAACGCAACCT 720 consensus_8014#1 TATTTCTTCCGCAACAGCGAGCATTTTACAACTTGGAAGAGTTCTATGGCAACGCAACCT 311 ************************* ********************************** consensus_8014#0 CCATTGAACTCCCTTTTGAGAAGCAGTTGCAGTGACTGCTGTTTTCATCTTCTCCTGGAG 780 consensus_8014#1 CCATTGAACTCCCTTTTGAGAAGCAGTTGCAGTGACTGCTGTTTTCATCTTCTCCTGGAG 371 ************************************************************ consensus_8014#0 AAATTGCAGGTTTCCACAAAAACCGAGCAGCATTGCGCCATGGATTCTCCACGTCTTCCT 840 consensus_8014#1 AAATTGCAGGTTTCCACAAAAACCGAGCAGCATTGCGCCATGGATTCTCCACGTCTTCCT 431 ************************************************************ consensus_8014#0 GCTCATATGTGACGAACTGCTCGGAGCTATAGATTTGCATGGTCTAACTCGCCAATGTCA 900 consensus_8014#1 GCTTATATGTGACGAACTGCTTGGAGCTATAGATTTGCATGGTCTAACTCGCCAATGTCA 491 *** ***************** ************************************** consensus_8014#0 CCTGGTGACTGCTCGCCAAGTTCAGAAGTGGGGCACCATGATGCCAACATTCTCCTTATC 960 consensus_8014#1 CCTGGTGACTGCTCGCCAAGTTCAGAAGTGGGGCACCATGATGCCAACATTCTCCTTATC 551 ************************************************************ consensus_8014#0 TGTTGTTAGACTACGTGAATCATTGTATTAACTATCACATTAGAGACGATAATTATTGGT 1020 consensus_8014#1 TGTTGTTAGACTACGTGAATCATTGTATTAACTATCACATTAGAGACGACAATTATTGGT 611 ************************************************* ********** consensus_8014#0 GCCAAGAGGAGTAGAGGCCAAGATGTAACACATTGTGCCAGTTCAGATTTCAGACGCGAG 1080 consensus_8014#1 GCCAAGAGGAATAGAGGCCAAGATGTAACACATTGTGCCAGTTCAAAAAAAAAAAAA--- 668 ********** ********************************** * * * consensus_8014#0 GATGCAGTGTGCAAGTTCAACTTAGGCATCCTTTGGAATGAAGGAATTTCAAGGGATCTT 1140 consensus_8014#1 ------------------------------------------------------------ consensus_8014#0 TGTAGTATTTGGACTAAATTCTATCAAAATCCAGTAAAATTACTCCGCGGTAAAATTACT 1200 consensus_8014#1 ------------------------------------------------------------ consensus_8014#0 TGGTCGAATCCTGAAAAAAAAAAAAA 1226 consensus_8014#1 -------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||