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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8014#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1226 fasta sequence
[GCCGTTTGTCTCACTACAACCTCGTCTTCTTCGTCTTCCTCCCCGTCGAGAATCCCGCAGCCGCGGCAAAGGCCACCATGAGAGCCGCCGCCATCCAGACCCACGCCCTCGTATGCGCGCCACCGGGGGCCGCCGCCGCCGCGCTGGCCCCATGGCCGCGGCGCGCTGCCGGCGGCGGCGGGGGAGGACCCCTCCTCCACCACCACCGGCTGAGGAGCGACCTGCCCCACACGCGCTCCCTCCCCTGCCGGGCTCGCTCGCCGTCGTCCTCCTCGTCGTCGAATGTGAATTCTGGGAGAGGGGACGACGCGGACAACCTGCTCGAGGATTTGCTCAGCAAGCATGGCGAGGTGGTGTACAACGCCGGTGGGGCTCCGGGCATTGATGCCGACGATGACGCCGAGTGCTTGTCCTTTGCTGTCTCCCTAGCTAAAGTTGCAAGCGAGGTGAAGGCTGCGGATATTCGTGTACTATTTGTGAAGCCGCTCGTTTACTGGACGAGGTTCTTCATCATCCTCACTGCTTTCTCAAATGCACAGATTGATGCTATCAGCTCCAAGATGAGAGACATCGGTGAGAAGCAGTTTAGCATAGTTGCATCTGGTGATACAAAACCAAATTCATGGACCTTGCTGGACTTCGGCGATGTTGTTGTCCATATATTTCTTCCGCAACAGCGAGCATTCTACAACTTGGAAGAG-TTC-TA-TGGC-AACGCAACCT-CCATTGAACTCC-CTTTTGAGAAGCA--GTTGCA-GTGACTGCT-GT-TTTCATCTTCTCCTGGAGAAATTGCAGGTTTCCACAAAAACCGAGCAGCATTGCGCCATGGATTCTCCACGTCTTCCTGCTCATATGTGACGAACTGCTCGGAGCTATAGATTTGCATGGTCTAACTCGCCA-ATGTCACCTGGTGACTGCTCGCCAAGTTCAGAAGTGGGGCACCA-TGATGCCAACATTCTCCTTATCTGTTGTTAGACTACGTGAATCATTGTATTAACTATCACATTAGAGACGATAATTATTGGTGCCAAGAGGAGTAGAGGCCAAGATGTAACACATTGTGCCAGTTCAGATTTCAGACGCGAGGATGCAGTGTGCAAGTTCAACTTAGGCATCCTTTGGAATGAAGGAATTTCAAGGGATCTTTGTAGTATTTGGACTAAATTCTATCAAAATCCAGTAAAATTACTCCGCGGTAAAATTACTTGGTCGAATCCTGAAAAAAAAAAAAA]
[+] EMBL AK065737 [GCCGTTTGTCTCACTACAACCTCGTCTTCTTCGTCTTCCTCCCCGTCGAGAATCCCGCAGCCGCGGCAAAGGCCACCATGAGAGCCGCCGCCATCCAGACCCACGCCCTCGTATGCGCGCCACCGGGGGCCGCCGCCGCCGCGCTGGCCCCATGGCCGCGGCGCGCTGCCGGCGGCGGCGGGGGAGGACCCCTCCTCCACCACCACCGGCTGAGGAGCGACCTGCCCCACACGCGCTCCCTCCCCTGCCGGGCTCGCTCGCCGTCGTCCTCCTCGTCGTCGAATGTGAATTCTGGGAGAGGGGACGACGCGGACAACCTGCTCGAGGATTTGCTCAGCAAGCATGGCGAGGTGGTGTACAACGCCGGTGGGGCTCCGGGCATTGATGCCGACGATGACGCCGAGTGCTTGTCCTTTGCTGTCTCCCTAGCTAAAGTTGCAAGCGAGGTGAAGGCTGCGGATATTCGTGTACTATTTGTGAAGCCGCTCGTTTACTGGACGAGGTTCTTCATCATCCTCACTGCTTTCTCAAATGCACAGATTGATGCTATCAGCTCCAAGATGAGAGACATCGGTGAGAAGCAGTTTAGCATAGTTGCATCTGGTGATACAAAACCAAATTCATGGACCTTGCTGGACTTCGGCGATGTTGTTGTCCATATATTTCTTCCGCAACAGCGAGCATTCTACAACTTGGAAGAG TTC TA TGGC AACGCAACCT CCATTGAACTCC CTTTTGAGAAGCA GTTGCA GTGACTGCT GT TTTCATCTTCTCCTGGAGAAATTGCAGGTTTCCACAAAAACCGAGCAGCATTGCGCCATGGATTCTCCACGTCTTCCTGCTCATATGTGACGAACTGCTCGGAGCTATAGATTTGCATGGTCTAACTCGCCA ATGTCACCTGGTGACTGCTCGCCAAGTTCAGAAGTGAGGCACCA TGATGCCAACATTCTCCTTATCTGTTGTTAGACTACGTGAATCATTGTATTAACTATCACATTAGAGACGATAATTATTGGTGCCAAGAGGAGTAGAGGCCAAGATGTAACACATTGTGCCAGTTCAGATTTCAGACGCGAGGATGCAGTGTGCAAGTTCAACTTAGGCATCCTTTGGAATGAAGGAATTTCAAGGGATCTTTGTAGTATTTGGACT ]
[+] EMBL BE228948 [ ATGACGCCGAGTGCTTGTCCTTTGCTGTCTCCCTAGCTAAAGTTGCAAGCGAAGTGAANGNTGNGGATATNCNTGTACTATTTGTGAAGCCGCTCGTNTANTGGACGAGGTTCTTCATCATCCTCACTGCTTTCTCNAATGCACAGATNGATGCTATCNNCTCCTAGATGAGAGACATCGGTGAGAAGCAGTTTAGCATAGTTGCATCTGGTGATACAAAACCAAATTCATGGACCTTGCTGGACTTCGGCGATGTTGTTGTCCATATATTTCNTCCGCAACAGCGAGCATTCTACAACTTGGAAGAA TTC TA TGGC AACGCAACCT CCANTGAACTCC CTTTTGAGAAGCA GTTGCA GTGACTGCT GT TTTCATCTTCTCCTGGAGAAATTGCAGGTTTCCACAAAAACCGAGCAGCATTGCGCCATGGATTCTCCACGTCTTCCTGCTCATATGTGACGAACTGCTCGGANCTATAGATTTGCATGGTCTAACTCGCCA ATGTC CCTGGTGACTGCTC CCAAGTTCAGAAGTGGGG CCA TGATGCC ACATTCTCCTTATCTGTTGTTAGACTACGT ]
[+] EMBL BI813463 [ GGAAGAGTTTCGTATTGGCAAACCAAACCTCCCGTTGAACTCCACTTTTGAGAAGCACGGTTGCACGTGACTGCTGGTGTGTCATCTTCTCCTGGAGAAATTGCAGGTTTCC CACAAACCGAGCAGCATTGCGCCATGGATTCTCCACGTCTTCCTGCTCATATGTGACGAACTGCTCGGAGCTATAGATTTGCATGGTCTAACTCGCCACATGTCACCTGGTGACTGCTCGCCAAGTTCAGAAGTGGGGCACCACTGATGCCCACATTCTCCTTATCTGTTGTTAGACTACGTGAATCATTGTATTAACTATCACATTAGAGACGATAATTATTGGTGCCAAGAGGAATAGAGGCCAAGATGTAACACATTGTGCCAGTTCAGATTTCAGACGCGAGGATGCAGTGTGCAAGTTCAAaaaaaaaa ]
[+] EMBL CA754009 [ ATTAACTATCACATTAGAGACGATAATTATTGGTGCCAAGAGGAGTAGAGGCCAAGATGTAACACATTGTGCCAGTTCAGATTTCAGACGCGAGGATGCAGTGTGCAAGTTCAACTTAGGCATCCTTTGGAATGAAGGAATTTCAAGGGATCTTTGTAGTATTTGGACTAAATTCTATCAAAATCCAGTAAAATTACTCCGCGGTAAAATTACTTGGTCGAATCCTGAAAAAAAAAAAAA]
consensusID : consensus_8014#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 668 fasta sequence
[GTCCTNTGCTGTCTCCCTAGCTAAAGTTGCAAGCGAGGTGAAGGCTGCGGATATTCGTGTACTATTTGTGAAGCCGCTCGTNTACTGGACGAGGTTCTTCATCATCCTCACTGCTTTCTCAAATGCACAGATTGATGCTATCAGCTCCAAGATGAGAGACATCGGTGAGAAGCAGTTTAGCATAGTTGCATCTGGTGATACAAAACCAAATTCATGGACCTTGCTGGACTTTGGCGATGTTGTTGTCCATATATTTCTTCCGCAACAGCGAGCATTTTACAACTTGGAAGAGTTCTATGGCAACGCAACCTCCATTGAACTCCCTTTTGAGAAGCAGTTGCAGTGACTGCTGTTTTCATCTTCTCCTGGAGAAATTGCAGGTTTCCACAAAAACCGAGCAGCATTGCGCCATGGATTCTCCACGTCTTCCTGCTTATATGTGACGAACTGCTTGGAGCTATAGATTTGCATGGTCTAACTCGCCAATGTCACCTGGTGACTGCTCGCCAAGTTCAGAAGTGGGGCACCATGATGCCAACATTCTCCTTATCTGTTGTTAGACTACGTGAATCATTGTATTAACTATCACATTAGAGACGACAATTATTGGTGCCAAGAGGAATAGAGGCCAAGATGTAACACATTGTGCCAGTTCAAAAAAAAAAAAA]
[-] EMBL CA759990 [GTCCTNTGCTGTCTCCCTAGCTAAAGTTGCAAGCGAGGTGAAGGCTGCGGATATTCGTGTACTATTTGTGAAGCCGCTCGTNTACTGGACGAGGTTCTTCATCATCCTCACTGCTTTCTCAAATGCACAGATTGATGCTATCAGCTCCAAGATGAGAGACATCGGTGAGAAGCAGTTTAGCATAGTTGCATCTGGTGATACAAAACCAAATTCATGGACCTTGCTGGACTTTGGCGATGTTGTTGTCCATATATTTCTTCCGCAACAGCGAGCATTTTACAACTTGGAAGAGTTCTATGGCAACGCAACCTCCATTGAACTCCCTTTTGAGAAGCAGTTGCAGTGACTGCTGTTTTCATCTTCTCCTGGAGAAATTGCAGGTTTCCACAAAAACCGAGCAGCATTGCGCCATGGATTCTCCACGTCTTCCTGCTTATATGTGACGAACTGCTTGGAGCTATAGATTTGCATGGTCTAACTCGCCAATGTCACCTGGTGACTGCTCGCCAAGTTCAGAAGTGGGGCACCATGATGCCAACATTCTCCTTATCTGTTGTTAGACTACGTGAATCATTGTATTAACTATCACATTAGAGACGACAATTATTGGTGCCAAGAGGAATAGAGGCCAAGATGTAACACATTGTGCCAGTTCAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8014#0 GCCGTTTGTCTCACTACAACCTCGTCTTCTTCGTCTTCCTCCCCGTCGAGAATCCCGCAG 60
consensus_8014#1 ------------------------------------------------------------
consensus_8014#0 CCGCGGCAAAGGCCACCATGAGAGCCGCCGCCATCCAGACCCACGCCCTCGTATGCGCGC 120
consensus_8014#1 ------------------------------------------------------------
consensus_8014#0 CACCGGGGGCCGCCGCCGCCGCGCTGGCCCCATGGCCGCGGCGCGCTGCCGGCGGCGGCG 180
consensus_8014#1 ------------------------------------------------------------
consensus_8014#0 GGGGAGGACCCCTCCTCCACCACCACCGGCTGAGGAGCGACCTGCCCCACACGCGCTCCC 240
consensus_8014#1 ------------------------------------------------------------
consensus_8014#0 TCCCCTGCCGGGCTCGCTCGCCGTCGTCCTCCTCGTCGTCGAATGTGAATTCTGGGAGAG 300
consensus_8014#1 ------------------------------------------------------------
consensus_8014#0 GGGACGACGCGGACAACCTGCTCGAGGATTTGCTCAGCAAGCATGGCGAGGTGGTGTACA 360
consensus_8014#1 ------------------------------------------------------------
consensus_8014#0 ACGCCGGTGGGGCTCCGGGCATTGATGCCGACGATGACGCCGAGTGCTTGTCCTTTGCTG 420
consensus_8014#1 -------------------------------------------------GTCCTNTGCTG 11
***** *****
consensus_8014#0 TCTCCCTAGCTAAAGTTGCAAGCGAGGTGAAGGCTGCGGATATTCGTGTACTATTTGTGA 480
consensus_8014#1 TCTCCCTAGCTAAAGTTGCAAGCGAGGTGAAGGCTGCGGATATTCGTGTACTATTTGTGA 71
************************************************************
consensus_8014#0 AGCCGCTCGTTTACTGGACGAGGTTCTTCATCATCCTCACTGCTTTCTCAAATGCACAGA 540
consensus_8014#1 AGCCGCTCGTNTACTGGACGAGGTTCTTCATCATCCTCACTGCTTTCTCAAATGCACAGA 131
********** *************************************************
consensus_8014#0 TTGATGCTATCAGCTCCAAGATGAGAGACATCGGTGAGAAGCAGTTTAGCATAGTTGCAT 600
consensus_8014#1 TTGATGCTATCAGCTCCAAGATGAGAGACATCGGTGAGAAGCAGTTTAGCATAGTTGCAT 191
************************************************************
consensus_8014#0 CTGGTGATACAAAACCAAATTCATGGACCTTGCTGGACTTCGGCGATGTTGTTGTCCATA 660
consensus_8014#1 CTGGTGATACAAAACCAAATTCATGGACCTTGCTGGACTTTGGCGATGTTGTTGTCCATA 251
**************************************** *******************
consensus_8014#0 TATTTCTTCCGCAACAGCGAGCATTCTACAACTTGGAAGAGTTCTATGGCAACGCAACCT 720
consensus_8014#1 TATTTCTTCCGCAACAGCGAGCATTTTACAACTTGGAAGAGTTCTATGGCAACGCAACCT 311
************************* **********************************
consensus_8014#0 CCATTGAACTCCCTTTTGAGAAGCAGTTGCAGTGACTGCTGTTTTCATCTTCTCCTGGAG 780
consensus_8014#1 CCATTGAACTCCCTTTTGAGAAGCAGTTGCAGTGACTGCTGTTTTCATCTTCTCCTGGAG 371
************************************************************
consensus_8014#0 AAATTGCAGGTTTCCACAAAAACCGAGCAGCATTGCGCCATGGATTCTCCACGTCTTCCT 840
consensus_8014#1 AAATTGCAGGTTTCCACAAAAACCGAGCAGCATTGCGCCATGGATTCTCCACGTCTTCCT 431
************************************************************
consensus_8014#0 GCTCATATGTGACGAACTGCTCGGAGCTATAGATTTGCATGGTCTAACTCGCCAATGTCA 900
consensus_8014#1 GCTTATATGTGACGAACTGCTTGGAGCTATAGATTTGCATGGTCTAACTCGCCAATGTCA 491
*** ***************** **************************************
consensus_8014#0 CCTGGTGACTGCTCGCCAAGTTCAGAAGTGGGGCACCATGATGCCAACATTCTCCTTATC 960
consensus_8014#1 CCTGGTGACTGCTCGCCAAGTTCAGAAGTGGGGCACCATGATGCCAACATTCTCCTTATC 551
************************************************************
consensus_8014#0 TGTTGTTAGACTACGTGAATCATTGTATTAACTATCACATTAGAGACGATAATTATTGGT 1020
consensus_8014#1 TGTTGTTAGACTACGTGAATCATTGTATTAACTATCACATTAGAGACGACAATTATTGGT 611
************************************************* **********
consensus_8014#0 GCCAAGAGGAGTAGAGGCCAAGATGTAACACATTGTGCCAGTTCAGATTTCAGACGCGAG 1080
consensus_8014#1 GCCAAGAGGAATAGAGGCCAAGATGTAACACATTGTGCCAGTTCAAAAAAAAAAAAA--- 668
********** ********************************** * * *
consensus_8014#0 GATGCAGTGTGCAAGTTCAACTTAGGCATCCTTTGGAATGAAGGAATTTCAAGGGATCTT 1140
consensus_8014#1 ------------------------------------------------------------
consensus_8014#0 TGTAGTATTTGGACTAAATTCTATCAAAATCCAGTAAAATTACTCCGCGGTAAAATTACT 1200
consensus_8014#1 ------------------------------------------------------------
consensus_8014#0 TGGTCGAATCCTGAAAAAAAAAAAAA 1226
consensus_8014#1 --------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||