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Oryza sativa
cluster # 8014 cluster # 8014       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8014#0 length = 1226 sequences # 4  
consensus_8014#1 length = 668 sequences # 1  

consensusID : consensus_8014#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1226
fasta sequence
                              [GCCGTTTGTCTCACTACAACCTCGTCTTCTTCGTCTTCCTCCCCGTCGAGAATCCCGCAGCCGCGGCAAAGGCCACCATGAGAGCCGCCGCCATCCAGACCCACGCCCTCGTATGCGCGCCACCGGGGGCCGCCGCCGCCGCGCTGGCCCCATGGCCGCGGCGCGCTGCCGGCGGCGGCGGGGGAGGACCCCTCCTCCACCACCACCGGCTGAGGAGCGACCTGCCCCACACGCGCTCCCTCCCCTGCCGGGCTCGCTCGCCGTCGTCCTCCTCGTCGTCGAATGTGAATTCTGGGAGAGGGGACGACGCGGACAACCTGCTCGAGGATTTGCTCAGCAAGCATGGCGAGGTGGTGTACAACGCCGGTGGGGCTCCGGGCATTGATGCCGACGATGACGCCGAGTGCTTGTCCTTTGCTGTCTCCCTAGCTAAAGTTGCAAGCGAGGTGAAGGCTGCGGATATTCGTGTACTATTTGTGAAGCCGCTCGTTTACTGGACGAGGTTCTTCATCATCCTCACTGCTTTCTCAAATGCACAGATTGATGCTATCAGCTCCAAGATGAGAGACATCGGTGAGAAGCAGTTTAGCATAGTTGCATCTGGTGATACAAAACCAAATTCATGGACCTTGCTGGACTTCGGCGATGTTGTTGTCCATATATTTCTTCCGCAACAGCGAGCATTCTACAACTTGGAAGAG-TTC-TA-TGGC-AACGCAACCT-CCATTGAACTCC-CTTTTGAGAAGCA--GTTGCA-GTGACTGCT-GT-TTTCATCTTCTCCTGGAGAAATTGCAGGTTTCCACAAAAACCGAGCAGCATTGCGCCATGGATTCTCCACGTCTTCCTGCTCATATGTGACGAACTGCTCGGAGCTATAGATTTGCATGGTCTAACTCGCCA-ATGTCACCTGGTGACTGCTCGCCAAGTTCAGAAGTGGGGCACCA-TGATGCCAACATTCTCCTTATCTGTTGTTAGACTACGTGAATCATTGTATTAACTATCACATTAGAGACGATAATTATTGGTGCCAAGAGGAGTAGAGGCCAAGATGTAACACATTGTGCCAGTTCAGATTTCAGACGCGAGGATGCAGTGTGCAAGTTCAACTTAGGCATCCTTTGGAATGAAGGAATTTCAAGGGATCTTTGTAGTATTTGGACTAAATTCTATCAAAATCCAGTAAAATTACTCCGCGGTAAAATTACTTGGTCGAATCCTGAAAAAAAAAAAAA]

[+] EMBL AK065737             [GCCGTTTGTCTCACTACAACCTCGTCTTCTTCGTCTTCCTCCCCGTCGAGAATCCCGCAGCCGCGGCAAAGGCCACCATGAGAGCCGCCGCCATCCAGACCCACGCCCTCGTATGCGCGCCACCGGGGGCCGCCGCCGCCGCGCTGGCCCCATGGCCGCGGCGCGCTGCCGGCGGCGGCGGGGGAGGACCCCTCCTCCACCACCACCGGCTGAGGAGCGACCTGCCCCACACGCGCTCCCTCCCCTGCCGGGCTCGCTCGCCGTCGTCCTCCTCGTCGTCGAATGTGAATTCTGGGAGAGGGGACGACGCGGACAACCTGCTCGAGGATTTGCTCAGCAAGCATGGCGAGGTGGTGTACAACGCCGGTGGGGCTCCGGGCATTGATGCCGACGATGACGCCGAGTGCTTGTCCTTTGCTGTCTCCCTAGCTAAAGTTGCAAGCGAGGTGAAGGCTGCGGATATTCGTGTACTATTTGTGAAGCCGCTCGTTTACTGGACGAGGTTCTTCATCATCCTCACTGCTTTCTCAAATGCACAGATTGATGCTATCAGCTCCAAGATGAGAGACATCGGTGAGAAGCAGTTTAGCATAGTTGCATCTGGTGATACAAAACCAAATTCATGGACCTTGCTGGACTTCGGCGATGTTGTTGTCCATATATTTCTTCCGCAACAGCGAGCATTCTACAACTTGGAAGAG TTC TA TGGC AACGCAACCT CCATTGAACTCC CTTTTGAGAAGCA  GTTGCA GTGACTGCT GT TTTCATCTTCTCCTGGAGAAATTGCAGGTTTCCACAAAAACCGAGCAGCATTGCGCCATGGATTCTCCACGTCTTCCTGCTCATATGTGACGAACTGCTCGGAGCTATAGATTTGCATGGTCTAACTCGCCA ATGTCACCTGGTGACTGCTCGCCAAGTTCAGAAGTGAGGCACCA TGATGCCAACATTCTCCTTATCTGTTGTTAGACTACGTGAATCATTGTATTAACTATCACATTAGAGACGATAATTATTGGTGCCAAGAGGAGTAGAGGCCAAGATGTAACACATTGTGCCAGTTCAGATTTCAGACGCGAGGATGCAGTGTGCAAGTTCAACTTAGGCATCCTTTGGAATGAAGGAATTTCAAGGGATCTTTGTAGTATTTGGACT                                                                       ]
[+] EMBL BE228948             [                                                                                                                                                                                                                                                                                                                                                                                                         ATGACGCCGAGTGCTTGTCCTTTGCTGTCTCCCTAGCTAAAGTTGCAAGCGAAGTGAANGNTGNGGATATNCNTGTACTATTTGTGAAGCCGCTCGTNTANTGGACGAGGTTCTTCATCATCCTCACTGCTTTCTCNAATGCACAGATNGATGCTATCNNCTCCTAGATGAGAGACATCGGTGAGAAGCAGTTTAGCATAGTTGCATCTGGTGATACAAAACCAAATTCATGGACCTTGCTGGACTTCGGCGATGTTGTTGTCCATATATTTCNTCCGCAACAGCGAGCATTCTACAACTTGGAAGAA TTC TA TGGC AACGCAACCT CCANTGAACTCC CTTTTGAGAAGCA  GTTGCA GTGACTGCT GT TTTCATCTTCTCCTGGAGAAATTGCAGGTTTCCACAAAAACCGAGCAGCATTGCGCCATGGATTCTCCACGTCTTCCTGCTCATATGTGACGAACTGCTCGGANCTATAGATTTGCATGGTCTAACTCGCCA ATGTC CCTGGTGACTGCTC CCAAGTTCAGAAGTGGGG  CCA TGATGCC ACATTCTCCTTATCTGTTGTTAGACTACGT                                                                                                                                                                                                                                                          ]
[+] EMBL BI813463             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GGAAGAGTTTCGTATTGGCAAACCAAACCTCCCGTTGAACTCCACTTTTGAGAAGCACGGTTGCACGTGACTGCTGGTGTGTCATCTTCTCCTGGAGAAATTGCAGGTTTCC CACAAACCGAGCAGCATTGCGCCATGGATTCTCCACGTCTTCCTGCTCATATGTGACGAACTGCTCGGAGCTATAGATTTGCATGGTCTAACTCGCCACATGTCACCTGGTGACTGCTCGCCAAGTTCAGAAGTGGGGCACCACTGATGCCCACATTCTCCTTATCTGTTGTTAGACTACGTGAATCATTGTATTAACTATCACATTAGAGACGATAATTATTGGTGCCAAGAGGAATAGAGGCCAAGATGTAACACATTGTGCCAGTTCAGATTTCAGACGCGAGGATGCAGTGTGCAAGTTCAAaaaaaaaa                                                                                                                      ]
[+] EMBL CA754009             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ATTAACTATCACATTAGAGACGATAATTATTGGTGCCAAGAGGAGTAGAGGCCAAGATGTAACACATTGTGCCAGTTCAGATTTCAGACGCGAGGATGCAGTGTGCAAGTTCAACTTAGGCATCCTTTGGAATGAAGGAATTTCAAGGGATCTTTGTAGTATTTGGACTAAATTCTATCAAAATCCAGTAAAATTACTCCGCGGTAAAATTACTTGGTCGAATCCTGAAAAAAAAAAAAA]


>consensus_8014#0 GCCGTTTGTCTCACTACAACCTCGTCTTCTTCGTCTTCCTCCCCGTCGAGAATCCCGCAG CCGCGGCAAAGGCCACCATGAGAGCCGCCGCCATCCAGACCCACGCCCTCGTATGCGCGC CACCGGGGGCCGCCGCCGCCGCGCTGGCCCCATGGCCGCGGCGCGCTGCCGGCGGCGGCG GGGGAGGACCCCTCCTCCACCACCACCGGCTGAGGAGCGACCTGCCCCACACGCGCTCCC TCCCCTGCCGGGCTCGCTCGCCGTCGTCCTCCTCGTCGTCGAATGTGAATTCTGGGAGAG GGGACGACGCGGACAACCTGCTCGAGGATTTGCTCAGCAAGCATGGCGAGGTGGTGTACA ACGCCGGTGGGGCTCCGGGCATTGATGCCGACGATGACGCCGAGTGCTTGTCCTTTGCTG TCTCCCTAGCTAAAGTTGCAAGCGAGGTGAAGGCTGCGGATATTCGTGTACTATTTGTGA AGCCGCTCGTTTACTGGACGAGGTTCTTCATCATCCTCACTGCTTTCTCAAATGCACAGA TTGATGCTATCAGCTCCAAGATGAGAGACATCGGTGAGAAGCAGTTTAGCATAGTTGCAT CTGGTGATACAAAACCAAATTCATGGACCTTGCTGGACTTCGGCGATGTTGTTGTCCATA TATTTCTTCCGCAACAGCGAGCATTCTACAACTTGGAAGAGTTCTATGGCAACGCAACCT CCATTGAACTCCCTTTTGAGAAGCAGTTGCAGTGACTGCTGTTTTCATCTTCTCCTGGAG AAATTGCAGGTTTCCACAAAAACCGAGCAGCATTGCGCCATGGATTCTCCACGTCTTCCT GCTCATATGTGACGAACTGCTCGGAGCTATAGATTTGCATGGTCTAACTCGCCAATGTCA CCTGGTGACTGCTCGCCAAGTTCAGAAGTGGGGCACCATGATGCCAACATTCTCCTTATC TGTTGTTAGACTACGTGAATCATTGTATTAACTATCACATTAGAGACGATAATTATTGGT GCCAAGAGGAGTAGAGGCCAAGATGTAACACATTGTGCCAGTTCAGATTTCAGACGCGAG GATGCAGTGTGCAAGTTCAACTTAGGCATCCTTTGGAATGAAGGAATTTCAAGGGATCTT TGTAGTATTTGGACTAAATTCTATCAAAATCCAGTAAAATTACTCCGCGGTAAAATTACT TGGTCGAATCCTGAAAAAAAAAAAAA



consensusID : consensus_8014#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 668
fasta sequence
                              [GTCCTNTGCTGTCTCCCTAGCTAAAGTTGCAAGCGAGGTGAAGGCTGCGGATATTCGTGTACTATTTGTGAAGCCGCTCGTNTACTGGACGAGGTTCTTCATCATCCTCACTGCTTTCTCAAATGCACAGATTGATGCTATCAGCTCCAAGATGAGAGACATCGGTGAGAAGCAGTTTAGCATAGTTGCATCTGGTGATACAAAACCAAATTCATGGACCTTGCTGGACTTTGGCGATGTTGTTGTCCATATATTTCTTCCGCAACAGCGAGCATTTTACAACTTGGAAGAGTTCTATGGCAACGCAACCTCCATTGAACTCCCTTTTGAGAAGCAGTTGCAGTGACTGCTGTTTTCATCTTCTCCTGGAGAAATTGCAGGTTTCCACAAAAACCGAGCAGCATTGCGCCATGGATTCTCCACGTCTTCCTGCTTATATGTGACGAACTGCTTGGAGCTATAGATTTGCATGGTCTAACTCGCCAATGTCACCTGGTGACTGCTCGCCAAGTTCAGAAGTGGGGCACCATGATGCCAACATTCTCCTTATCTGTTGTTAGACTACGTGAATCATTGTATTAACTATCACATTAGAGACGACAATTATTGGTGCCAAGAGGAATAGAGGCCAAGATGTAACACATTGTGCCAGTTCAAAAAAAAAAAAA]

[-] EMBL CA759990             [GTCCTNTGCTGTCTCCCTAGCTAAAGTTGCAAGCGAGGTGAAGGCTGCGGATATTCGTGTACTATTTGTGAAGCCGCTCGTNTACTGGACGAGGTTCTTCATCATCCTCACTGCTTTCTCAAATGCACAGATTGATGCTATCAGCTCCAAGATGAGAGACATCGGTGAGAAGCAGTTTAGCATAGTTGCATCTGGTGATACAAAACCAAATTCATGGACCTTGCTGGACTTTGGCGATGTTGTTGTCCATATATTTCTTCCGCAACAGCGAGCATTTTACAACTTGGAAGAGTTCTATGGCAACGCAACCTCCATTGAACTCCCTTTTGAGAAGCAGTTGCAGTGACTGCTGTTTTCATCTTCTCCTGGAGAAATTGCAGGTTTCCACAAAAACCGAGCAGCATTGCGCCATGGATTCTCCACGTCTTCCTGCTTATATGTGACGAACTGCTTGGAGCTATAGATTTGCATGGTCTAACTCGCCAATGTCACCTGGTGACTGCTCGCCAAGTTCAGAAGTGGGGCACCATGATGCCAACATTCTCCTTATCTGTTGTTAGACTACGTGAATCATTGTATTAACTATCACATTAGAGACGACAATTATTGGTGCCAAGAGGAATAGAGGCCAAGATGTAACACATTGTGCCAGTTCAAAAAAAAAAAAA]


>consensus_8014#1 GTCCTNTGCTGTCTCCCTAGCTAAAGTTGCAAGCGAGGTGAAGGCTGCGGATATTCGTGT ACTATTTGTGAAGCCGCTCGTNTACTGGACGAGGTTCTTCATCATCCTCACTGCTTTCTC AAATGCACAGATTGATGCTATCAGCTCCAAGATGAGAGACATCGGTGAGAAGCAGTTTAG CATAGTTGCATCTGGTGATACAAAACCAAATTCATGGACCTTGCTGGACTTTGGCGATGT TGTTGTCCATATATTTCTTCCGCAACAGCGAGCATTTTACAACTTGGAAGAGTTCTATGG CAACGCAACCTCCATTGAACTCCCTTTTGAGAAGCAGTTGCAGTGACTGCTGTTTTCATC TTCTCCTGGAGAAATTGCAGGTTTCCACAAAAACCGAGCAGCATTGCGCCATGGATTCTC CACGTCTTCCTGCTTATATGTGACGAACTGCTTGGAGCTATAGATTTGCATGGTCTAACT CGCCAATGTCACCTGGTGACTGCTCGCCAAGTTCAGAAGTGGGGCACCATGATGCCAACA TTCTCCTTATCTGTTGTTAGACTACGTGAATCATTGTATTAACTATCACATTAGAGACGA CAATTATTGGTGCCAAGAGGAATAGAGGCCAAGATGTAACACATTGTGCCAGTTCAAAAA AAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8014#0      GCCGTTTGTCTCACTACAACCTCGTCTTCTTCGTCTTCCTCCCCGTCGAGAATCCCGCAG 60
consensus_8014#1      ------------------------------------------------------------
                                                                                  

consensus_8014#0      CCGCGGCAAAGGCCACCATGAGAGCCGCCGCCATCCAGACCCACGCCCTCGTATGCGCGC 120
consensus_8014#1      ------------------------------------------------------------
                                                                                  

consensus_8014#0      CACCGGGGGCCGCCGCCGCCGCGCTGGCCCCATGGCCGCGGCGCGCTGCCGGCGGCGGCG 180
consensus_8014#1      ------------------------------------------------------------
                                                                                  

consensus_8014#0      GGGGAGGACCCCTCCTCCACCACCACCGGCTGAGGAGCGACCTGCCCCACACGCGCTCCC 240
consensus_8014#1      ------------------------------------------------------------
                                                                                  

consensus_8014#0      TCCCCTGCCGGGCTCGCTCGCCGTCGTCCTCCTCGTCGTCGAATGTGAATTCTGGGAGAG 300
consensus_8014#1      ------------------------------------------------------------
                                                                                  

consensus_8014#0      GGGACGACGCGGACAACCTGCTCGAGGATTTGCTCAGCAAGCATGGCGAGGTGGTGTACA 360
consensus_8014#1      ------------------------------------------------------------
                                                                                  

consensus_8014#0      ACGCCGGTGGGGCTCCGGGCATTGATGCCGACGATGACGCCGAGTGCTTGTCCTTTGCTG 420
consensus_8014#1      -------------------------------------------------GTCCTNTGCTG 11
                                                                       ***** *****

consensus_8014#0      TCTCCCTAGCTAAAGTTGCAAGCGAGGTGAAGGCTGCGGATATTCGTGTACTATTTGTGA 480
consensus_8014#1      TCTCCCTAGCTAAAGTTGCAAGCGAGGTGAAGGCTGCGGATATTCGTGTACTATTTGTGA 71
                      ************************************************************

consensus_8014#0      AGCCGCTCGTTTACTGGACGAGGTTCTTCATCATCCTCACTGCTTTCTCAAATGCACAGA 540
consensus_8014#1      AGCCGCTCGTNTACTGGACGAGGTTCTTCATCATCCTCACTGCTTTCTCAAATGCACAGA 131
                      ********** *************************************************

consensus_8014#0      TTGATGCTATCAGCTCCAAGATGAGAGACATCGGTGAGAAGCAGTTTAGCATAGTTGCAT 600
consensus_8014#1      TTGATGCTATCAGCTCCAAGATGAGAGACATCGGTGAGAAGCAGTTTAGCATAGTTGCAT 191
                      ************************************************************

consensus_8014#0      CTGGTGATACAAAACCAAATTCATGGACCTTGCTGGACTTCGGCGATGTTGTTGTCCATA 660
consensus_8014#1      CTGGTGATACAAAACCAAATTCATGGACCTTGCTGGACTTTGGCGATGTTGTTGTCCATA 251
                      **************************************** *******************

consensus_8014#0      TATTTCTTCCGCAACAGCGAGCATTCTACAACTTGGAAGAGTTCTATGGCAACGCAACCT 720
consensus_8014#1      TATTTCTTCCGCAACAGCGAGCATTTTACAACTTGGAAGAGTTCTATGGCAACGCAACCT 311
                      ************************* **********************************

consensus_8014#0      CCATTGAACTCCCTTTTGAGAAGCAGTTGCAGTGACTGCTGTTTTCATCTTCTCCTGGAG 780
consensus_8014#1      CCATTGAACTCCCTTTTGAGAAGCAGTTGCAGTGACTGCTGTTTTCATCTTCTCCTGGAG 371
                      ************************************************************

consensus_8014#0      AAATTGCAGGTTTCCACAAAAACCGAGCAGCATTGCGCCATGGATTCTCCACGTCTTCCT 840
consensus_8014#1      AAATTGCAGGTTTCCACAAAAACCGAGCAGCATTGCGCCATGGATTCTCCACGTCTTCCT 431
                      ************************************************************

consensus_8014#0      GCTCATATGTGACGAACTGCTCGGAGCTATAGATTTGCATGGTCTAACTCGCCAATGTCA 900
consensus_8014#1      GCTTATATGTGACGAACTGCTTGGAGCTATAGATTTGCATGGTCTAACTCGCCAATGTCA 491
                      *** ***************** **************************************

consensus_8014#0      CCTGGTGACTGCTCGCCAAGTTCAGAAGTGGGGCACCATGATGCCAACATTCTCCTTATC 960
consensus_8014#1      CCTGGTGACTGCTCGCCAAGTTCAGAAGTGGGGCACCATGATGCCAACATTCTCCTTATC 551
                      ************************************************************

consensus_8014#0      TGTTGTTAGACTACGTGAATCATTGTATTAACTATCACATTAGAGACGATAATTATTGGT 1020
consensus_8014#1      TGTTGTTAGACTACGTGAATCATTGTATTAACTATCACATTAGAGACGACAATTATTGGT 611
                      ************************************************* **********

consensus_8014#0      GCCAAGAGGAGTAGAGGCCAAGATGTAACACATTGTGCCAGTTCAGATTTCAGACGCGAG 1080
consensus_8014#1      GCCAAGAGGAATAGAGGCCAAGATGTAACACATTGTGCCAGTTCAAAAAAAAAAAAA--- 668
                      ********** ********************************** *    * *      

consensus_8014#0      GATGCAGTGTGCAAGTTCAACTTAGGCATCCTTTGGAATGAAGGAATTTCAAGGGATCTT 1140
consensus_8014#1      ------------------------------------------------------------
                                                                                  

consensus_8014#0      TGTAGTATTTGGACTAAATTCTATCAAAATCCAGTAAAATTACTCCGCGGTAAAATTACT 1200
consensus_8014#1      ------------------------------------------------------------
                                                                                  

consensus_8014#0      TGGTCGAATCCTGAAAAAAAAAAAAA 1226
consensus_8014#1      --------------------------
                                                




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)