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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8015#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1885 fasta sequence
[ACAAGTTTGCATTGTTGGTCTGCAAGAATTTGAGGTTTCTGATGTTCAGATTGTCAAGGAATATATTGAGAGAGGAAATGCAGCCCGGAGTACAGGGTCAACAGGGGCCAATGAAGAATCATCAAGGTCACATGCTATTCTGCAGCTGGCTATCAAGAAACATATCATAGTAACTGATACCAGGCGACAAAGAGATCGAGATGCTAATGAATCTAAAAACACAAAGGCTGTGGGAAAAATTTCATTTATTGATCTTGCTGGAAGCGAGCGTGGAGCCGATACAACAGACAATGATAGGCAGACGAGAATTGAAGGAGCTGAGATAAACAAGAGCCTGCTCGCTCTGAAGGAATGCATTCGGGCCCTTGATAACGATCAGATACACATTCCTTTCAGAGGAAGCAAGCTTACAGAAGTTCTTCGTGATTCATTTGTTGGTAACTCTAGGACGGTGATGATCTCTTGCATTTCTCCAAATGCAGGTTCATGTGAACACACATTAAATACCTTGAGATATGCTGACAGGGTTAAAAGTCTCTCAAAGGGCAGCAATACAAGAAAAGAGCAGCCCACTGGGCCAACTATACCTTCCAGCAAGGATTCTTCATCTGCCCCTTCATATCCTATGCCCATCGAAACTGAGGAAATTGCCAACCAGATTCAAGAGAAGAGACCTGTTGAAACTTCTAGGAAGGCTGCTGAAAATTTCACCTCGAACTCTTCTATGGAACCTGACAGGAATCCTGTTAGTATGATTCCAAGTTATTCTAATAGA-GGAAAAGAAGAAAATGGTTCATCTGGCTTGAATGACAGAGAACGGGTTGATCTGAATTCCAGTCGAATTAGCTACAACAGTAAACCACAGTCTGTTCAGAGTTCAGCAAATTTACAAGAAGAGGAAAAGGTTACAAAAGTTTCTCCTCCTCGGAGAAAGGCCTATAGGGATGACAAACCTGAAAGGCAGAGCAACTATGCGAAGAAGGATAGTGGACCTGAGACAAGTAGGCCTGGGTATAAGGTGCAGCAGGCAAAGCAGTTGCAACAGCAACAACGGCCGACATCTGCTTCAGCTTCTCAGAATTCATCAAGGCAATCTGAAAAGGAAAGTTCTTGTGATGATGTGGAAATAGATGCTGTTCTTGAGGAAGAGGAGGCTCTCATAGCAGCACACAGGAAGGAAATCGAGAACACTATGGAGATTGTACGAGAAGAGATGAACCTTTTGGCAGAAGTTGACCAGCCAGGGAGCCTTATTGACAACTATGTAACACAACTGAGTTTTCTTCTGTCACGCAAGGCTGCTGGCTTGGTCAGCCTCCAAGCACGCCTGGCGCGGTTTCAGCATCGCCTCAAAGAGCAGGAGATACTCAGCCGTAAGAAATCTTCCAGATAAAGCCCCCGGTCATCTCTCGGCGACTTTGGCCTTTTGCCTTGTCAGAGCACCGATTGGAGCTTTGACCGCCGTTTCATGCGAAGCTCTTCCCCTGTCGGGCTCCTGTAACGTTGGATCTAAGCAAGGAGCTAAGCGAAGATATAGCGCAGTTGCTTAGAGAGGCGCCTGGTTGGTGGTTTCCTTTGGGACGTTTTGTCAGGTTTGGTCAGCAGTTTGCTAAAATAGTCCTTCCACAGTGGGGCTGCTTGGGCTTGTGTTGTTTTTTTGGCAGATGCATGGCTTGGCCTCTTTTGCCAGTTTTTCCA-TTGTATGATGAGACGTGTAACTACTGTGTTTGCAGATATGGATGGGTTGGTTTCCGATGTTTGGGAGACAAATCCTCTCTTC------TTTTTTTT-TTATCAACATAGAGATATTGCTGCTGTATTCTTTACTGATTATTTGCGTTGAGAAAGAAAAAGTTTGTGTATGTCAAGGACTAGAAAATATTTAATA]
[+] EMBL AK064328 [ACAAGTTTGCATTGTTGGTCTGCAAGAATTTGAGGTTTCTGATGTTCAGATTGTCAAGGAATATATTGAGAGAGGAAATGCAGCCCGGAGTACAGGGTCAACAGGGGCCAATGAAGAATCATCAAGGTCACATGCTATTCTGCAGCTGGCTATCAAGAAACATATCATAGTAACTGATACCAGGCGACAAAGAGATCGAGATGCTAATGAATCTAAAAACACAAAGGCTGTGGGAAAAATTTCATTTATTGATCTTGCTGGAAGCGAGCGTGGAGCCGATACAACAGACAATGATAGGCAGACGAGAATTGAAGGAGCTGAGATAAACAAGAGCCTGCTCGCTCTGAAGGAATGCATTCGGGCCCTTGATAACGATCAGATACACATTCCTTTCAGAGGAAGCAAGCTTACAGAAGTTCTTCGTGATTCATTTGTTGGTAACTCTAGGACGGTGATGATCTCTTGCATTTCTCCAAATGCAGGTTCATGTGAACACACATTAAATACCTTGAGATATGCTGACAGGGTTAAAAGTCTCTCAAAGGGCAGCAATACAAGAAAAGAGCAGCCCACTGGGCCAACTATACCTTCCAGCAAGGATTCTTCATCTGCCCCTTCATATCCTATGCCCATCGAAACTGAGGAAATTGCCAACCAGATTCAAGAGAAGAGACCTGTTGAAACTTCTAGGAAGGCTGCTGAAAATTTCACCTCGAACTCTTCTATGGAACCTGACAGGAATCCTGTTAGTATGATTCCAAGTTATTCTAATAGA GGAAAAGAAGAAAATGGTTCATCTGGCTTGAATGACAGAGAACGGGTTGATCTGAATTCCAGTCGAATTAGCTACAACAGTAAACCACAGTCTGTTCAGAGTTCAGCAAATTTACAAGAAGAGGAAAAGGTTACAAAAGTTTCTCCTCCTCGGAGAAAGGCCTATAGGGATGACAAACCTGAAAGGCAGAGCAACTATGCGAAGAAGGATAGTGGACCTGAGACAAGTAGGCCTGGGTATAAGGTGCAGCAGGCAAAGCAGTTGCAACAGCAACAACGGCCGACATCTGCTTCAGCTTCTCAGAATTCATCAAGGCAATCTGAAAAGGAAAGTTCTTGTGATGATGTGGAAATAGATGCTGTTCTTGAGGAAGAGGAGGCTCTCATAGCAGCACACAGGAAGGAAATCGAGAACACTATGGAGATTGTACGAGAAGAGATGAACCTTTTGGCAGAAGTTGACCAGCCAGGGAGCCTTATTGACAACTATGTAACACAACTGAGTTTTCTTCTGTCACGCAAGGCTGCTGGCTTGGTCAGCCTCCAAGCACGCCTGGCGCGGTTTCAGCATCGCCTCAAAGAGCAGGAGATACTCAGCCGTAAGAAATCTTCCAGATAAAGCCCCCGGTCATCTCTCGGCGACTTTGGCCTTTTGCCTTGTCAGAGCACCGATTGGAGCTTTGACCGCCGTTTCATGCGAAGCTCTTCCCCTGTCGGGCTCCTGTAACGTTGGATCTAAGCAAGGAGCTAAGCGAAGATATAGCGCAGTTGCTTAGAGAGGCGCCTGGTTGGTGGTTTCCTTTGGGACGTTTTGTCAGGTTTGGTCAGCAGTTTGCTAAAATAGTCCTTCCACAGTGGGGCTGCTTGGGCTTGTGTTGTTTTTTTGGCAGATGCATGGCTTGGCCTCTTTTGCCAGTTTTTCCA TTGTATGATGAGACGTGTAACTACTGTGTTTGCAGATATGGATGGGTTGGTTTCCGATGTTTGGGAGACAAATCCTCTCTTC TTTTTTTT TTATCAACATAGAGATATTGCTGCTGTATTCTTTACTGATTATTTGCGTTGAGAAAGAAAAAGTTTGTGTATGTCAAGGACTAGAAAATATTTAATA]
[+] EMBL AU065203 [ AGAGGAAGCAAGCTTACAGAAGTTCTTCGTGATTCATTTGTTGGTAACTCTAGGACGGTGATGATCTCTTGCATTTCTCCAAATGCAGGTTCATGTGAACACACATTAAATACCTTGAGATATGCTGACAGGGTTAAAAGTCTCTCAAAGGGCAGCAATACAAGAAAAGAGCAGCCCACTGGGCCAACTATACCTTCCAGCAAGGATTCTTCATCTGCCCCTTCATATCCTATGCCCATCGAAACTGAGGAAATTGCCAACCAGATTCAAGAGAAGAGACCTGTTGAAACTTCTAGGAAGGCTGCTGAAAATTTCACCTCGAACTCTTCTATGGAACCTGACAGGAATCCTGTTAGTATGATTCCAAGTTATTCTAATAGAGGGAAAAGAAGAAAATGGTTCATCTGGCTTGAATGACAGAGAAC ]
[+] EMBL BP184806 [ TGGAAATAGATGCTATTCTTGAGGAAGAGGAGGCTCTCATAGCAGCACACAGGAAGGAAATCGAGAACACTATGGAGATTGTACGAGAAGAGATGAACCTTTTGGCAGAAGTTGACCAGCCAGGGAGCCTTATTGACAACTATGTAACACAACTGAGTTTTCTTCTGTCACGCAAGGCTGCTGGCTTGGTCAGCCTCCAAGCACGCCTGGCGCGGTTTCAGCATCGCCTCAAAGAGCAGGAGATACTCAGCCGTAAGAAATCTTCCAGATAAAGCCCCCGGTCATCTCTCGGCGACTTTGGCCTTTTGCCTTGTCAGAGCACCGATTGGAGCTTTGACCGCCGTTTCATGCGAAGCTCTTCCCCTGTCGGGCTCCTGTAACGTTGGATCTAAGCAAGGAGCTAAGCGAAGATATAGCGCAGTTGCTTAGAGAGGCGCCTGGTTGGTGGTTTCCTTTGGGACGTTTTGTCAGGTTTGGTCAGCAGTTTGCTAAAATAGTCCTTCCACAGTGGGGCTGCTTGGGCTTGTGTTGTTTTTTTGGCAGATGCATGGCTTGGCCTCTTTTGCCAGTTTTTCCA TTGTATGATGAGACGTGTAACTACTGT ]
[+] EMBL BM420932 [ CAGCCGTAAGAAATCTTCCAGATAAAGCCCCCGGTCATCTCTCGGCGACTTTGGCCTTTTGCCTTGTCAGAGCACCGATTGGAGCTTTGACCGCCGTTTCATGCGAAGCTCTTCCCCTGTCGGGCTCCTGTAACGTTGGATCTAAGCAAGGAGCTAAGCGAAGATATAGCGCAGTTGCTTAGAGAGGCGCCTGGTTGGTGGTTTCCTTTGGGACGTTTTGTCAGGTTTGGTCAGCAGTTTGCTAAAATAGTCCTTCCACAGTGGGGCTGCTTGGGCTTGTGTTGTTTTTTTGGCAGATGCATGGCTTGGCCTCTTTTGCCAGTTTTTCCACTTGTATGATGAGACATGTAACTACTGTGTTTGCAGATATGGATGGGTTGGTTTCCGATGTTTGGGAGAC AATCCTCTCTTCTGTTTTTTTTTTTTGTTATCAACATAGAGATATTGCTGCTGTATTCTTTACTGATTATTTGCGTTGAGAAAGAAAAAGTTTGTGTATGTCAAaaaaaaaa ]
consensusID : consensus_8015#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 665 fasta sequence
[GAAGAGATGAACCTTTTGNCAGAAGTTGACCAGCCAGGGAGCCTTATTGACAACTATGTAACNCAACTGAGTTTTCTTCTGTCACGCAAGGCTGCTGGCTTGGTCAGCCTCCAAGCACGCCTGGCGCGGTTTCAGCATCGCCTCAAAGAGCAGGAGATACTCAGCCGTAAGAAATCTTCCAGATAAAGCCCCCGGTCATCTCTCGGCGACTTTGGCCTTTTGCCTTGTCAGAGCACCGATTGGAGCTTTGACCGCCGTTTCATGCGAAGCTCTTCCCCTGTCGGGCTCCTGTAACGTTGGATCTAAGCAAGGAGCTAAGCGAAGATATAGCGCAGTTGCTTAGAGAGGCGCCTGGTTGGTGGTTTCCTTTGGGACGTTTTGTCAGGTTTGGTCAGCAGTTTGCTAAAATAGTCCTTCCACAGTGGGGCTGCTTGGGCTTGTGTTGTTTTTTTGGCAGATGCATGGCTTGGCCTCTTTTGCCAGTTTTTCCATTGTATGATGAGACGTGTAACTACTGTGTTTGCAGATATGGATGGGTTGGTTTCCGATGTTTGGGAGACAAATCCTCTCTTCTTTTTTTTTTATCAACATAGAGATATTGCTGCTGTATTCTTTACTGATTATTTGCGTTGAGAAAGAAAAAGTTTGTGTAAAAAAAAAAAAAA]
[+] EMBL AU097109 [GAAGAGATGAACCTTTTGNCAGAAGTTGACCAGCCAGGGAGCCTTATTGACAACTATGTAACNCAACTGAGTTTTCTTCTGTCACGCAAGGCTGCTGGCTTGGTCAGCCTCCAAGCACGCCTGGCGCGGTTTCAGCATCGCCTCAAAGAGCAGGAGATACTCAGCCGTAAGAAATCTTCCAGATAAAGCCCCCGGTCATCTCTCGGCGACTTTGGCCTTTTGCCTTGTCAGAGCACCGATTGGAGCTTTGACCGCCGTTTCATGCGAAGCTCTTCCCCTGTCGGGCTCCTGTAACGTTGGATCTAAGCAAGGAGCTAAGCGAAGATATAGCGCAGTTGCTTAGAGAGGCGCCTGGTTGGTGGTTTCCTTTGGGACGTTTTGTCAGGTTTGGTCAGCAGTTTGCTAAAATAGTCCTTCCACAGTGGGGCTGCTTGGGCTTGTGTTGTTTTTTTGGCAGATGCATGGCTTGGCCTCTTTTGCCAGTTTTTCCATTGTATGATGAGACGTGTAACTACTGTGTTTGCAGATATGGATGGGTTGGTTTCCGATGTTTGGGAGACAAATCCTCTCTTCTTTTTTTTTTATCAACATAGAGATATTGCTGCTGTATTCTTTACTGATTATTTGCGTTGAGAAAGAAAAAGTTTGTGTAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8015#0 ACAAGTTTGCATTGTTGGTCTGCAAGAATTTGAGGTTTCTGATGTTCAGATTGTCAAGGA 60
consensus_8015#1 ------------------------------------------------------------
consensus_8015#0 ATATATTGAGAGAGGAAATGCAGCCCGGAGTACAGGGTCAACAGGGGCCAATGAAGAATC 120
consensus_8015#1 ------------------------------------------------------------
consensus_8015#0 ATCAAGGTCACATGCTATTCTGCAGCTGGCTATCAAGAAACATATCATAGTAACTGATAC 180
consensus_8015#1 ------------------------------------------------------------
consensus_8015#0 CAGGCGACAAAGAGATCGAGATGCTAATGAATCTAAAAACACAAAGGCTGTGGGAAAAAT 240
consensus_8015#1 ------------------------------------------------------------
consensus_8015#0 TTCATTTATTGATCTTGCTGGAAGCGAGCGTGGAGCCGATACAACAGACAATGATAGGCA 300
consensus_8015#1 ------------------------------------------------------------
consensus_8015#0 GACGAGAATTGAAGGAGCTGAGATAAACAAGAGCCTGCTCGCTCTGAAGGAATGCATTCG 360
consensus_8015#1 ------------------------------------------------------------
consensus_8015#0 GGCCCTTGATAACGATCAGATACACATTCCTTTCAGAGGAAGCAAGCTTACAGAAGTTCT 420
consensus_8015#1 ------------------------------------------------------------
consensus_8015#0 TCGTGATTCATTTGTTGGTAACTCTAGGACGGTGATGATCTCTTGCATTTCTCCAAATGC 480
consensus_8015#1 ------------------------------------------------------------
consensus_8015#0 AGGTTCATGTGAACACACATTAAATACCTTGAGATATGCTGACAGGGTTAAAAGTCTCTC 540
consensus_8015#1 ------------------------------------------------------------
consensus_8015#0 AAAGGGCAGCAATACAAGAAAAGAGCAGCCCACTGGGCCAACTATACCTTCCAGCAAGGA 600
consensus_8015#1 ------------------------------------------------------------
consensus_8015#0 TTCTTCATCTGCCCCTTCATATCCTATGCCCATCGAAACTGAGGAAATTGCCAACCAGAT 660
consensus_8015#1 ------------------------------------------------------------
consensus_8015#0 TCAAGAGAAGAGACCTGTTGAAACTTCTAGGAAGGCTGCTGAAAATTTCACCTCGAACTC 720
consensus_8015#1 ------------------------------------------------------------
consensus_8015#0 TTCTATGGAACCTGACAGGAATCCTGTTAGTATGATTCCAAGTTATTCTAATAGAGGAAA 780
consensus_8015#1 ------------------------------------------------------------
consensus_8015#0 AGAAGAAAATGGTTCATCTGGCTTGAATGACAGAGAACGGGTTGATCTGAATTCCAGTCG 840
consensus_8015#1 ------------------------------------------------------------
consensus_8015#0 AATTAGCTACAACAGTAAACCACAGTCTGTTCAGAGTTCAGCAAATTTACAAGAAGAGGA 900
consensus_8015#1 ------------------------------------------------------------
consensus_8015#0 AAAGGTTACAAAAGTTTCTCCTCCTCGGAGAAAGGCCTATAGGGATGACAAACCTGAAAG 960
consensus_8015#1 ------------------------------------------------------------
consensus_8015#0 GCAGAGCAACTATGCGAAGAAGGATAGTGGACCTGAGACAAGTAGGCCTGGGTATAAGGT 1020
consensus_8015#1 ------------------------------------------------------------
consensus_8015#0 GCAGCAGGCAAAGCAGTTGCAACAGCAACAACGGCCGACATCTGCTTCAGCTTCTCAGAA 1080
consensus_8015#1 ------------------------------------------------------------
consensus_8015#0 TTCATCAAGGCAATCTGAAAAGGAAAGTTCTTGTGATGATGTGGAAATAGATGCTGTTCT 1140
consensus_8015#1 ------------------------------------------------------------
consensus_8015#0 TGAGGAAGAGGAGGCTCTCATAGCAGCACACAGGAAGGAAATCGAGAACACTATGGAGAT 1200
consensus_8015#1 ------------------------------------------------------------
consensus_8015#0 TGTACGAGAAGAGATGAACCTTTTGGCAGAAGTTGACCAGCCAGGGAGCCTTATTGACAA 1260
consensus_8015#1 -------GAAGAGATGAACCTTTTGNCAGAAGTTGACCAGCCAGGGAGCCTTATTGACAA 53
****************** **********************************
consensus_8015#0 CTATGTAACACAACTGAGTTTTCTTCTGTCACGCAAGGCTGCTGGCTTGGTCAGCCTCCA 1320
consensus_8015#1 CTATGTAACNCAACTGAGTTTTCTTCTGTCACGCAAGGCTGCTGGCTTGGTCAGCCTCCA 113
********* **************************************************
consensus_8015#0 AGCACGCCTGGCGCGGTTTCAGCATCGCCTCAAAGAGCAGGAGATACTCAGCCGTAAGAA 1380
consensus_8015#1 AGCACGCCTGGCGCGGTTTCAGCATCGCCTCAAAGAGCAGGAGATACTCAGCCGTAAGAA 173
************************************************************
consensus_8015#0 ATCTTCCAGATAAAGCCCCCGGTCATCTCTCGGCGACTTTGGCCTTTTGCCTTGTCAGAG 1440
consensus_8015#1 ATCTTCCAGATAAAGCCCCCGGTCATCTCTCGGCGACTTTGGCCTTTTGCCTTGTCAGAG 233
************************************************************
consensus_8015#0 CACCGATTGGAGCTTTGACCGCCGTTTCATGCGAAGCTCTTCCCCTGTCGGGCTCCTGTA 1500
consensus_8015#1 CACCGATTGGAGCTTTGACCGCCGTTTCATGCGAAGCTCTTCCCCTGTCGGGCTCCTGTA 293
************************************************************
consensus_8015#0 ACGTTGGATCTAAGCAAGGAGCTAAGCGAAGATATAGCGCAGTTGCTTAGAGAGGCGCCT 1560
consensus_8015#1 ACGTTGGATCTAAGCAAGGAGCTAAGCGAAGATATAGCGCAGTTGCTTAGAGAGGCGCCT 353
************************************************************
consensus_8015#0 GGTTGGTGGTTTCCTTTGGGACGTTTTGTCAGGTTTGGTCAGCAGTTTGCTAAAATAGTC 1620
consensus_8015#1 GGTTGGTGGTTTCCTTTGGGACGTTTTGTCAGGTTTGGTCAGCAGTTTGCTAAAATAGTC 413
************************************************************
consensus_8015#0 CTTCCACAGTGGGGCTGCTTGGGCTTGTGTTGTTTTTTTGGCAGATGCATGGCTTGGCCT 1680
consensus_8015#1 CTTCCACAGTGGGGCTGCTTGGGCTTGTGTTGTTTTTTTGGCAGATGCATGGCTTGGCCT 473
************************************************************
consensus_8015#0 CTTTTGCCAGTTTTTCCATTGTATGATGAGACGTGTAACTACTGTGTTTGCAGATATGGA 1740
consensus_8015#1 CTTTTGCCAGTTTTTCCATTGTATGATGAGACGTGTAACTACTGTGTTTGCAGATATGGA 533
************************************************************
consensus_8015#0 TGGGTTGGTTTCCGATGTTTGGGAGACAAATCCTCTCTTCTTTTTTTTTTATCAACATAG 1800
consensus_8015#1 TGGGTTGGTTTCCGATGTTTGGGAGACAAATCCTCTCTTCTTTTTTTTTTATCAACATAG 593
************************************************************
consensus_8015#0 AGATATTGCTGCTGTATTCTTTACTGATTATTTGCGTTGAGAAAGAAAAAGTTTGTGTAT 1860
consensus_8015#1 AGATATTGCTGCTGTATTCTTTACTGATTATTTGCGTTGAGAAAGAAAAAGTTTGTGTA- 652
***********************************************************
consensus_8015#0 GTCAAGGACTAGAAAATATTTAATA 1885
consensus_8015#1 ---AAAAAAAAAAAAA--------- 665
** * * ****
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||