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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8016#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1158 fasta sequence
[CCGGTGGCCCGGAAGGCGGCGGCCAGCGTTGCGCCGGACGTCGCGGCGTCGCTGATCGCCGTGGCGAACGGCGAGGCCGCGCCGGCGTTGACGGGGCCGCCGAGGTGCCCCTGGGTCACTCCTAACACTGATCCATGCTATGCTGCCTTCCATGACCATGAATGGGGAGTCCCGGTGCATGATGACAAGAAATTGTTTGAGATGCTAGTCCTGTCTGGTGCATTGGCTGAAATGACATGGCCTGCAATTCTCAGCAAGAGGGAAACATTCAAGGAGGTTTTCATGGACTTTGATCCTCTATTGGTAGCAAAGCTAAGTGAGAGGAAAATTCTGGGGCCATGCAGCCCTGCAAGGTCTCTCCTGTCAGAGCATAGGCTGCGTATAATCATTGAAAATGCACAGGAGGTCCTAAAGGTCATAGAGGAGTTTGGATCATTTGACAACTACTGCTGGGGCTTCCTGAACAGCAAGCCGATGGTTGGCAGATTCCGGCACCCGCGGGAGGTGCCGATGAAGACGCCGAAGGCCGACGCCATGAGCCAGGACCTGCTCCGGCGAGGCTTCCTCGGCGTCGGGCCGACGGTGATCTACGCCTTCATGCAGGCCGTCGGCATGGCCAATGACCACCTCGTCACCTGCTACCGCTTCGGCGAGTGCTGCAGCTGCAGCAGCAGCACTGAAGCTCCTGCCGCCGCCGCCATGGATGGCGCTGACAATCACAGCAAGAGCATGGTGAAAGATCAGGAGGTGAACATGATCTGTGGATTGGTCGAGTGCGTCAGCTTGGAGCCGTCGAGAGCTAGAGCCACCACCGTGCTCAGCATCTCCTAGCATTCGCTCAATCGACGGCGGCAATGGCGACTGATCCAGTAGGAGCTTCACAGTTTGTTCACTGTATAGAGTGAGTGAGTTTGCTGCAGTGGCCTCCGTTTTTCTTGGCGTGTCAGAGATTGGGTTTGTGAAATTGTGTATATGATTGTTCATTTGAGGTTTGGGTGATATGTGCTTTGCTTGAACTGTGTGGGTTCAGAGAAAGATACATACATAGGTAGCC-AAAA-AAAAAAGTTTCAGACGATTTGATCACCTTACCGGCTGCAGATCATGTAAAGTTGCAATGTTGGTTTTATCTAATTGATCAAGTGATACACGCAAANNNTT]
[+] EMBL AK120582 [CCGGTGGCCCGGAAGGCGGCGGCCAGCGTTGCGCCGGACGTCGCGGCGTCGCTGATCGCCGTGGCGAACGGCGAGGCCGCGCCGGCGTTGACGGGGCCGCCGAGGTGCCCCTGGGTCACTCCTAACACTGATCCATGCTATGCTGCCTTCCATGACCATGAATGGGGAGTCCCGGTGCATGATGACAAGAAATTGTTTGAGATGCTAGTCCTGTCTGGTGCATTGGCTGAAATGACATGGCCTGCAATTCTCAGCAAGAGGGAAACATTCAAGGAGGTTTTCATGGACTTTGATCCTCTATTGGTAGCAAAGCTAAGTGAGAGGAAAATTCTGGGGCCATGCAGCCCTGCAAGGTCTCTCCTGTCAGAGCATAGGCTGCGTATAATCATTGAAAATGCACAGGAGGTCCTAAAGGTCATAGAGGAGTTTGGATCATTTGACAACTACTGCTGGGGCTTCCTGAACAGCAAGCCGATGGTTGGCAGATTCCGGCACCCGCGGGAGGTGCCGATGAAGACGCCGAAGGCCGACGCCATGAGCCAGGACCTGCTCCGGCGAGGCTTCCTCGGCGTCGGGCCGACGGTGATCTACGCCTTCATGCAGGCCGTCGGCATGGCCAATGACCACCTCGTCACCTGCTACCGCTTCGGCGAGTGCTGCAGCTGCAGCAGCAGCACTGAAGCTCCTGCCGCCGCCGCCATGGATGGCGCTGACAATCACAGCAAGAGCATGGTGAAAGATCAGGAGGTGAACATGATCTGTGGATTGGTCGAGTGCGTCAGCTTGGAGCCGTCGAGAGCTAGAGCCACCACCGTGCTCAGCATCTCCTAGCATTCGCTCAATCGACGGCGGCAATGGCGACTGATCCAGTAGGAGCTTCACAGTTTGTTCACTGTATAGAGTGAGTGAGTTTGCTGCAGTGGCCTCCGTTTTTCTTGGCGTGTCAGAGATTGGGTTTGTGAAATTGTGTATATGATTGTTCATTTGAGGTTTGGGTGATATGTGCTTTGCTTGAACTGTGTGGGTTCAGAGAAAGATACATACATAGGTAGCC AAAA AAAAAAGTTTCAGACGATTTGATCACCTTACCGGCTGCAGATCATGTAAAGTTGCAATGTTGGTTTTATCTAATTG ]
[+] EMBL AU101737 [ CGCCATGGATGGCGCTGACAATCACAGCAAGAGCATGGTGAAAGATCAGGAGGTGAACATGATCTGTGGATTGGTCGAGTGCGTCAGCTTGGAGCCGTCGAGAGCTAGAGCCACCACCGTGCTCAGCATCTCCTAGCATTCGCTCAATCGACGGCGGCAATGGCGACTGATCCAGTAGGAGCTTCACAGTTTGTTCACTGTATAGAGTGAGTGAGTTTGCTGCAGTGGCCTCCGTTTTTCTTGGCGTGTCAGAGATTGGGTTTGTGAAATTGTGTATATGATTGTTCATTTGAGGTTTGGGTGATATGTGCTTTGCTTGAACTGTGTGGGTTCAGAGAAAGATACATACATAGGTAGCC AAAATNAAAAAGTTTCAGACGATTTGATCACCTTACCGGCTGCAGATCATGTAAAGTTGCAATGTTGGTTTTATCTAATTGATCAAGTGATACACGCAAANNNTT]
[+] EMBL AU222677 [ cnCTGTATAGAGTGAGTGAGTTTGNTGCAGTGGCCTCCGTTTTTNTTGGCGTGTCANAGATTGGGTTTGTGAAANTGTGTATATGATTGTTCATTTGAGGTTTGGGTGATATGTGCTTTGCTTGAACTGTGTGGGTTCAGAGAAAGATACATACATAGGTAGCCAAAAA AAAAAAGTTTCAGACGATTTGATCACCTTACCGGCTGCAGATCATGTAAAGTTGCAATGTTGGTTTTATCTAATTGATCAAGTGATACACGCAAAaaaaa]
consensusID : consensus_8016#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 363 fasta sequence
[TGACATTGTAACAGATCCATGCTATGCTGCCTTCCATGACCATGAATGGGGAGTCCCGGTGCATGATGACAAGTACGTCTAAACCCAATCAAATTAGATACAAGTTTTACTTAGAATTCTAGTCAGATAAATTATAAAGTTACAATTTTCAGCCCTGAACCTGCAGGAAATTGTTTGAGATGCTAGTCCTGTCTGGTGCATTGGCTGAAATGACATGGCCTGCAATTCTCAGCAAGAGGGAAACATTCAAGGAGGTTTTCATGGACTTTGATCCTCTATTGGTAGCAAAGCTAAGTGAGGAGGAAAATTCTGGGGCCATGCAGCCCTCAAGGTCTCTCCTGTCAGAGCATA-GGCTGCGTATAA]
[+] EMBL OSS11654A [TGACATTGTAACAGATCCATGCTATGCTGCCTTCCATGACCATGAATGGGGAGTCCCGGTGCATGATGACAAGTACGTCTAAACCCAATCAAATTAGATACAAGTTTTACTTAGAATTCTAGTCAGATAAATTATAAAGTTACAATTTTCAGCCCTGAACCTGCAGGAAATTGTTTGAGATGCTAGTCCTGTCTGGTGCATTGGCTGAAATGACATGGCCTGCAATTCTCAGCAAGAGGGAAACATTCAAGGAGGTTTTCATGGACTTTGATCCTCTATTGGTAGCAAAGCTAAGTGAGGAGGAAAATTCTGGGGCCATGCAGCCCTCAAGGTCTCTCCTGTCAGAGCATA GGCTGCGTATAA]
[+] EMBL OSS11615A [TGACATTGTAACAGATCCATGCTATGCTGCCTTCCATGACCATGAATGGGGAGTCCCGGTGCATGATGACAAGTACGTCTAAACCCAATCAAATTAGATACAAGTTTTACTTAGAATTCTAGTCAGATAAATTATAAAGTTACAATTTTCAGCCCTGAACCTGCAGGAAATTGTTTGAGATGCTAGTCCTGTCTGGTGCATTGGCTGAAATGACATGGCCTGCAATTCTCAGCAAGAGGGAAACATTCAAGGAGGTTTTCATGGACTTTGATCCTCTATTGGTAGCAAAGCTAAGTGAGGAGG AAATTCTGGGGCCATGCAGCCTTCAAGGTCTCTCCTGTCAGAGCATAGGGCTGCGT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8016#0 CCGGTGGCCCGGAAGGCGGCGGCCAGCGTTGCGCCGGACGT-CGCGGCGTCGCTGATCGC 59
consensus_8016#1 -----------------------TGACATTGTAACAGATCCATGCTATGCTGCCTTCCAT 37
* *** * ** ** * ** *
consensus_8016#0 CGTGGCGAACGGCGAGGCCGCGCCGGCGTTGACGGGGCCGCCGAGGTGCCCCTGGGTCAC 119
consensus_8016#1 GACCATGAATGGGGAGTCCCGGTGCATGATGACAAGTACGTCTAAACCCAATCAAATTAG 97
*** ** *** ** * * **** * ** * * * * *
consensus_8016#0 TCCTAACACTGATCCATGCTATGCTGCCTTCCATGACCATGAATGGGGAGTCCCGGTGCA 179
consensus_8016#1 ATACAAGTTTTACTTAGA--ATTCTAGTCAGATAAATTATAAAGTTACAATTTTCAGCCC 155
** * * * ** ** * ** ** * * *
consensus_8016#0 TGA--TGACAAGAAATTGTTTGAGATGCTAGTCCTGTCTGGTGCATTGGCTGAAATGACA 237
consensus_8016#1 TGAACCTGCAGGAAATTGTTTGAGATGCTAGTCCTGTCTGGTGCATTGGCTGAAATGACA 215
*** ** *************************************************
consensus_8016#0 TGGCCTGCAATTCTCAGCAAGAGGGAAACATTCAAGGAGGTTTTCATGGACTTTGATCCT 297
consensus_8016#1 TGGCCTGCAATTCTCAGCAAGAGGGAAACATTCAAGGAGGTTTTCATGGACTTTGATCCT 275
************************************************************
consensus_8016#0 CTATTGGTAGCAAAGCTAAGTGAG-AGGAAAATTCTGGGGCCATGCAGCCCTGCAAGGTC 356
consensus_8016#1 CTATTGGTAGCAAAGCTAAGTGAGGAGGAAAATTCTGGGGCCATGCAGCCCT-CAAGGTC 334
************************ *************************** *******
consensus_8016#0 TCTCCTGTCAGAGCATAGGCTGCGTATAATCATTGAAAATGCACAGGAGGTCCTAAAGGT 416
consensus_8016#1 TCTCCTGTCAGAGCATAGGCTGCGTATAA------------------------------- 363
*****************************
consensus_8016#0 CATAGAGGAGTTTGGATCATTTGACAACTACTGCTGGGGCTTCCTGAACAGCAAGCCGAT 476
consensus_8016#1 ------------------------------------------------------------
consensus_8016#0 GGTTGGCAGATTCCGGCACCCGCGGGAGGTGCCGATGAAGACGCCGAAGGCCGACGCCAT 536
consensus_8016#1 ------------------------------------------------------------
consensus_8016#0 GAGCCAGGACCTGCTCCGGCGAGGCTTCCTCGGCGTCGGGCCGACGGTGATCTACGCCTT 596
consensus_8016#1 ------------------------------------------------------------
consensus_8016#0 CATGCAGGCCGTCGGCATGGCCAATGACCACCTCGTCACCTGCTACCGCTTCGGCGAGTG 656
consensus_8016#1 ------------------------------------------------------------
consensus_8016#0 CTGCAGCTGCAGCAGCAGCACTGAAGCTCCTGCCGCCGCCGCCATGGATGGCGCTGACAA 716
consensus_8016#1 ------------------------------------------------------------
consensus_8016#0 TCACAGCAAGAGCATGGTGAAAGATCAGGAGGTGAACATGATCTGTGGATTGGTCGAGTG 776
consensus_8016#1 ------------------------------------------------------------
consensus_8016#0 CGTCAGCTTGGAGCCGTCGAGAGCTAGAGCCACCACCGTGCTCAGCATCTCCTAGCATTC 836
consensus_8016#1 ------------------------------------------------------------
consensus_8016#0 GCTCAATCGACGGCGGCAATGGCGACTGATCCAGTAGGAGCTTCACAGTTTGTTCACTGT 896
consensus_8016#1 ------------------------------------------------------------
consensus_8016#0 ATAGAGTGAGTGAGTTTGCTGCAGTGGCCTCCGTTTTTCTTGGCGTGTCAGAGATTGGGT 956
consensus_8016#1 ------------------------------------------------------------
consensus_8016#0 TTGTGAAATTGTGTATATGATTGTTCATTTGAGGTTTGGGTGATATGTGCTTTGCTTGAA 1016
consensus_8016#1 ------------------------------------------------------------
consensus_8016#0 CTGTGTGGGTTCAGAGAAAGATACATACATAGGTAGCCAAAAAAAAAAGTTTCAGACGAT 1076
consensus_8016#1 ------------------------------------------------------------
consensus_8016#0 TTGATCACCTTACCGGCTGCAGATCATGTAAAGTTGCAATGTTGGTTTTATCTAATTGAT 1136
consensus_8016#1 ------------------------------------------------------------
consensus_8016#0 CAAGTGATACACGCAAANNNTT 1158
consensus_8016#1 ----------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||