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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8017#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 918 fasta sequence
[AGGACGACGGTGTGCTGCTGCTTCGGCTCGCCGGGGGAGCGGCGGAGCGGGGAGAAGTTGAGGTGGAGGCGGCGGGTGGCCGCGGGGGAGTTCGGGTACGACCCGCTCAGCTACGCGCTCAACTTCGACGATGGCGACGGCGACGACGACGCCGCAGACGACGCCGCCGCGGCCTTCCGGTACAAGAACTTCTCCTCCCGGCTCCCGCCCTCGCCGGTGGCGGCGCCGGCGCGGCGGTCGACGGCCATCGCCATCTCATGAACTGTACCCCACCTGTCTCCACCTCCACGCCCTAACTCTTCTTCACTATAGAGAGATTAAACTGTGTACTCATGATTAAACTACAGCATCAAAAATTGTGAGATTATTACTACACTATTAGCTTAGAGGAAATGTTCCCATGGTTTCGACACATGGTTTCCTATGTAATTCGATACATATCGAGATGTTTGTGAAAAATTGGTGATGTATCCCAGAATTGGGGCGATTTTAGTCTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAAAAAAANNNNANNNAAAAAANNNANNAAAAAANNNNNNNNNAAAAAAANNNNNANAANNNNNNNNNNTTTTGGGGGGGGGGGCCGGGGCCCAAATGGGCCTAATGGGGGAGTTTTTCACCCCCCCCCCCTGGCCCTTTTTATCACACTGGGGGGTGGGAAAAACCGGGAGTTACCCCATAATAAATCCCTGAAAAAAAACCCCCTTTCCCGAAGGGGGAAAAAACAAAAGGCGCCCCAAAATTCCTCTACAAAGTTGGCACCCTTAAGGGGAAAGAGGACCCCTTTGTGAGGCTATAAACCGGGGATTGGGGTGTCCCCCACGGGCCCCTTCTTTGGGAGCCCTAAGCGCGTTTTTGTTTTTCTCATTT]
[-] EMBL CB964529 [AGGACGACGGTGTGCTGCTGCTTCGGCTCGCCGGGGGAGCGGCGGAGCGGGGAGAAGTTGAGGTGGAGGCGGCGGGTGGCCGCGGGGGAGTTCGGGTACGACCCGCTCAGCTACGCGCTCAACTTCGACGATGGCGACGGCGACGACGACGCCGCAGACGACGCCGCCGCGGCCTTCCGGTACAAGAACTTCTCCTCCCGGCTCCCGCCCTCGCCGGTGGCGGCGCCGGCGCGGCGGTCGACGGCCATCGCCATCTCATGAACTGTACCCCACCTGTCTCCACCTCCACGCCCTAACTCTTCTTCACTATAGAGAGATTAAACTGTGTACTCATGATTAAACTACAGCATCAAAAATTGTGAGATTATTACTACACTATTAGCTTAGAGGAAATGTTCCCATGGTTTCGACACATGGTTTCCTATGTAATTCGATACATATCGAGATGTTTGTGAAAAATTGGTGATGTATCCCAGAATTGGGG ]
[+] EMBL CA758503 [ GACGCCGCAGACGACGCCGCCGCGGCCTTCCGGTACAAGAACTTCTCCTCCCGGCTCCCGCCCTCGCCGGTGGCGGCGCCGGCGCGGCGGTCGACGGCCATCGCCATCTCATGAACTGTACCCCACCTGTCTCCACCTCCACGCCCTAACTCTTCTTCACTATAGAGAGATTAAACTGTGTACTCATGATTAAACTACAGCATCAAAAATTGTGAGATTATTACTACACTATTAGCTTAGAGGAAATGTTCCCATGGTTTCGACACATGGTTTCCTATGTAATTGGATACATATCGAGATGTTTGTGAAAAATTGGTGATGTATCCCAGAATTGGGGCGATTTTAGTCTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAAAAAAANNNNANNNAAAAAANNNANNAAAAAANNNNNNNNNAAAAAAANNNNNANAANNNNNNNNNNTTTTGGGGGGGGGGGCCGGGGCCCAAATGGGCCTAATGGGGGAGTTTTTCACCCCCCCCCCCTGGCCCTTTTTATCACACTGGGGGGTGGGAAAAACCGGGAGTTACCCCATAATAAATCCCTGAAAAAAAACCCCCTTTCCCGAAGGGGGAAAAAACAAAAGGCGCCCCAAAATTCCTCTACAAAGTTGGCACCCTTAAGGGGAAAGAGGACCCCTTTGTGAGGCTATAAACCGGGGATTGGGGTGTCCCCCACGGGCCCCTTCTTTGGGAGCCCTAAGCGCGTTTTTGTTTTTCTCATTT]
consensusID : consensus_8017#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 648 fasta sequence
[AACCACCATCTCATCATCGGAAAATTCATCTCAAAAAATCACCAGTGATCCCAATCCACTACTACGGCGAGAGCTAGCTCGATGGAGGCATCGCCGCCGACGTCGCCGTCGTCGCTAAGGCACAGACTGAGGACGACGGTGTGCTGCTGCTTCGGCTCGCCGGGGGAGCGGCGGAGCG-GGGAGAAGCTGAGGTGGAGGCGGCGGGTGGCCGCGGGGGAGTTCGGGTACGACCCGCTCAGCTACGCGCTCAACTTCGACGATGGCGACGGCGACGACGACGCCGCAGACGACGCCGCCGCGGCCTTCCGGTACAAGAACTTCTCCTCCCGGCTCCCGCCCTCGCCGGTGGCGGCGCCGGCGCGGCGGTCGACGGCCATCGCCATCTCATGAACTGTACCCCACCTGTCTCCTCCTCCACGCCCTAACTCTTCTTCACTATAGAGAGATTAAACTGTGTACTCATGATTAAACTACAGCATCAAAAATTGTGAGATTATTACTACACTATTAGCTTAGAGGAAATGTTCCCATGGTTTCGACACATGGTTTCCTATGTAATTCGATACATATCGAGATGTTTGTGAAAAATTGGTGATGTATCCCAGAATTGGGGCGATTTTAGTCTTGAAAAAAAATCTCTCCCTCCTT]
[+] EMBL AK062869 [AACCACCATCTCATCATCGGAAAATTCATCTCAAAAAATCACCAGTGATCCCAATCCACTACTACGGCGAGAGCTAGCTCGATGGAGGCATCGCCGCCGACGTCGCCGTCGTCGCTAAGGCACAGACTGAGGACGACGGTGTGCTGCTGCTTCGGCTCGCCGGGGGAGCGGCGGAGCG GGGAGAAGCTGAGGTGGAGGCGGCGGGTGGCCGCGGGGGAGTTCGGGTACGACCCGCTCAGCTACGCGCTCAACTTCGACGATGGCGACGGCGACGACGACGCCGCAGACGACGCCGCCGCGGCCTTCCGGTACAAGAACTTCTCCTCCCGGCTCCCGCCCTCGCCGGTGGCGGCGCCGGCGCGGCGGTCGACGGCCATCGCCATCTCATGAACTGTACCCCACCTGTCTCCTCCTCCACGCCCTAACTCTTCTTCACTATAGAGAGATTAAACTGTGTACTCATGATTAAACTACAGCATCAAAAATTGTGAGATTATTACTACACTATTAGCTTAGAGGAAATGTTCCCATGGTTTCGACACATGGTTTCCTATGTAATTCGATACATATCGAGATGTTTGTGAAAAATTGGTGATGTATCCCAGAATTGGGGCGATTTTAGTCTTGAAAAAAAATCTCTCCCTCCTT]
[+] EMBL OSS11012A [ CAATCCACTACTACGGCGAGAGCTAGCTCGATGGAGGCATCGCCGCCGACGTCGCCGTCGTCGCTAAGGCACAGACTGAGGACGACGGTNTGCTGCTGCTTNGGCTCGCCGGGGGAGCGGCGGA CGNNGGAGAAGCTNAGGTGGAGNCGGCGGGTTGCCGCGNGGAAGTTCGNGTACGACCCGCTCAGCTACGCGCTCAAC ]
consensusID : consensus_8017#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 236 fasta sequence
[GCACAGACTGAGGACGACGGTGTGCTGCTGCTTCGGCTCGCCGGGGGAGCGGCGGAGCGGGGAGAAGCTGAGGTGGAGGCGGCGGGTGGCCGCGGGGGAGTTCGGGTACGACCCGCTCAGCTACGCGCTCAACTTCTACGATGGCGGCGCTGACTACGGCGCCGTTAGACGACTCCCCCGGCGTCCTTTAGACGCGTTTCCCCCTCCCCCCTCTTTTCTGACTCCATCTATTCACC]
[+] EMBL CA756740 [GCACAGACTGAGGACGACGGTGTGCTGCTGCTTCGGCTCGCCGGGGGAGCGGCGGAGCGGGGAGAAGCTGAGGTGGAGGCGGCGGGTGGCCGCGGGGGAGTTCGGGTACGACCCGCTCAGCTACGCGCTCAACTTCTACGATGGCGGCGCTGACTACGGCGCCGTTAGACGACTCCCCCGGCGTCCTTTAGACGCGTTTCCCCCTCCCCCCTCTTTTCTGACTCCATCTATTCACC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8017#0 ------------------------------------------------------------
consensus_8017#1 AACCACCATCTCATCATCGGAAAATTCATCTCAAAAAATCACCAGTGATCCCAATCCACT 60
consensus_8017#2 ------------------------------------------------------------
consensus_8017#0 ------------------------------------------------------------
consensus_8017#1 ACTACGGCGAGAGCTAGCTCGATGGAGGCATCGCCGCCGACGTCGCCGTCGTCGCTAAGG 120
consensus_8017#2 -----------------------------------------------------------G 1
consensus_8017#0 ---------AGGACGACGGTGTGCTGCTGCTTCGGCTCGCCGGGGGAGCGGCGGAGCGGG 51
consensus_8017#1 CACAGACTGAGGACGACGGTGTGCTGCTGCTTCGGCTCGCCGGGGGAGCGGCGGAGCGGG 180
consensus_8017#2 CACAGACTGAGGACGACGGTGTGCTGCTGCTTCGGCTCGCCGGGGGAGCGGCGGAGCGGG 61
***************************************************
consensus_8017#0 GAGAAGTTGAGGTGGAGGCGGCGGGTGGCCGCGGGGGAGTTCGGGTACGACCCGCTCAGC 111
consensus_8017#1 GAGAAGCTGAGGTGGAGGCGGCGGGTGGCCGCGGGGGAGTTCGGGTACGACCCGCTCAGC 240
consensus_8017#2 GAGAAGCTGAGGTGGAGGCGGCGGGTGGCCGCGGGGGAGTTCGGGTACGACCCGCTCAGC 121
****** *****************************************************
consensus_8017#0 TACGCGCTCAACTTCGACGATGGCGACGGCGACGACGACGCCGC-AGACGACGCCGCCGC 170
consensus_8017#1 TACGCGCTCAACTTCGACGATGGCGACGGCGACGACGACGCCGC-AGACGACGCCGCCGC 299
consensus_8017#2 TACGCGCTCAACTTCTACGATGGCGGCGCTGACTACGGCGCCGTTAGACGACTCCCCCGG 181
*************** ********* ** *** *** ***** ******* ** ***
consensus_8017#0 GGCCTTCCGGTACAAGAACTTCTCCTCCCGGCTCCCGCCCTCGCCGGTGGCGGCGCCGGC 230
consensus_8017#1 GGCCTTCCGGTACAAGAACTTCTCCTCCCGGCTCCCGCCCTCGCCGGTGGCGGCGCCGGC 359
consensus_8017#2 CGTCCTTTAG-ACGCGT-TTCCCCCTCCCCCCTCTTTTCTGACTCCATCTATTCACC--- 236
* * * * ** * * * ****** *** * * * * **
consensus_8017#0 GCGGCGGTCGACGGCCATCGCCATCTCATGAACTGTACCCCACCTGTCTCCACCTCCACG 290
consensus_8017#1 GCGGCGGTCGACGGCCATCGCCATCTCATGAACTGTACCCCACCTGTCTCCTCCTCCACG 419
consensus_8017#2 ------------------------------------------------------------
consensus_8017#0 CCCTAACTCTTCTTCACTATAGAGAGATTAAACTGTGTACTCATGATTAAACTACAGCAT 350
consensus_8017#1 CCCTAACTCTTCTTCACTATAGAGAGATTAAACTGTGTACTCATGATTAAACTACAGCAT 479
consensus_8017#2 ------------------------------------------------------------
consensus_8017#0 CAAAAATTGTGAGATTATTACTACACTATTAGCTTAGAGGAAATGTTCCCATGGTTTCGA 410
consensus_8017#1 CAAAAATTGTGAGATTATTACTACACTATTAGCTTAGAGGAAATGTTCCCATGGTTTCGA 539
consensus_8017#2 ------------------------------------------------------------
consensus_8017#0 CACATGGTTTCCTATGTAATTCGATACATATCGAGATGTTTGTGAAAAATTGGTGATGTA 470
consensus_8017#1 CACATGGTTTCCTATGTAATTCGATACATATCGAGATGTTTGTGAAAAATTGGTGATGTA 599
consensus_8017#2 ------------------------------------------------------------
consensus_8017#0 TCCCAGAATTGGGGCGATTTTAGTCTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 530
consensus_8017#1 TCCCAGAATTGGGGCGATTTTAGTCTTGAAAAAAAATCTCTCCCTCCTT----------- 648
consensus_8017#2 ------------------------------------------------------------
consensus_8017#0 AAAAAAAAAAAAANAAAAAAAAAAANNNNANNNAAAAAANNNANNAAAAAANNNNNNNNN 590
consensus_8017#1 ------------------------------------------------------------
consensus_8017#2 ------------------------------------------------------------
consensus_8017#0 AAAAAAANNNNNANAANNNNNNNNNNTTTTGGGGGGGGGGGCCGGGGCCCAAATGGGCCT 650
consensus_8017#1 ------------------------------------------------------------
consensus_8017#2 ------------------------------------------------------------
consensus_8017#0 AATGGGGGAGTTTTTCACCCCCCCCCCCTGGCCCTTTTTATCACACTGGGGGGTGGGAAA 710
consensus_8017#1 ------------------------------------------------------------
consensus_8017#2 ------------------------------------------------------------
consensus_8017#0 AACCGGGAGTTACCCCATAATAAATCCCTGAAAAAAAACCCCCTTTCCCGAAGGGGGAAA 770
consensus_8017#1 ------------------------------------------------------------
consensus_8017#2 ------------------------------------------------------------
consensus_8017#0 AAACAAAAGGCGCCCCAAAATTCCTCTACAAAGTTGGCACCCTTAAGGGGAAAGAGGACC 830
consensus_8017#1 ------------------------------------------------------------
consensus_8017#2 ------------------------------------------------------------
consensus_8017#0 CCTTTGTGAGGCTATAAACCGGGGATTGGGGTGTCCCCCACGGGCCCCTTCTTTGGGAGC 890
consensus_8017#1 ------------------------------------------------------------
consensus_8017#2 ------------------------------------------------------------
consensus_8017#0 CCTAAGCGCGTTTTTGTTTTTCTCATTT 918
consensus_8017#1 ----------------------------
consensus_8017#2 ----------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||