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Oryza sativa
cluster # 8020 cluster # 8020       Sequences # 5       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8020#0 length = 1994 sequences # 3  
consensus_8020#1 length = 757 sequences # 1  
consensus_8020#2 length = 593 sequences # 1  

consensusID : consensus_8020#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1994
fasta sequence
                              [AACCAAACCCGGCGACGGCACACAGGTTTTAGCACCGGACGGGAGCTCTCCGCCGTCGCCGACGACGACGCCGCCGGGGTGCCCAGCTCGCAGGATCACACAGAGAAGGTTGATGATGTGAAAGCTAGACCCGACGAGCTCGACATTGCTATCGTTGGTGGAGGCATGGTGGGATTGGCTGTTGCTTGTGCATTGTCCAATATGCCATTGACTAAACATCTGAGGGTTGGCATCATTGATAGCAATCCTGCATTGAAGTCAAGAAATTATCTGAAGAAAGATGGTGTACCTGATTCAAGGGTCAGTACTATTACTCCCGCGACCATATCCTTCTTCAGAGATATTGGTGCATGGGATCATGTTCAACAGCAAAGACACGCTTTCTTTGGTAAAATGCAGGTATGGGATTACACTGGACTGGGTTACACAAGGTATAGTGCAAGGGATGTGGGAAAAGAATATCTCGGATGCGTGGTGGAGAACAAGGTGCTTTGCAACTCACTGTTGTTACGATTACAGGAGGAAAATGGAGACATTGAAAAGATGATCTACCCTACTAGACTGATTTCTCTTGCTTTGCCATCAAAGAGCAGACAAGCACCAACAAGGGAAGCAATATCCAGTGGTTACCCTCCAGAAGAATTAAATCGCAGCAATTTAGTTAAACTTGAGCTAAGTGATGGACAAACTTTATATTCAAAACTAGTGGTGGGAGCTGACGGTTCCAAGTCCAATGTAAGGCAAACAGCAGGCATAAAAACAACAGGGTGGAATTATCCTCAAAGTGCAATTATTTGTACAGTGGAGCATATTACCGAAAACGATTGTGCATGGCAGAGGTTTCTCCCTTCTGGGCCAATTGCTCTACTTCCAATAGGTGACAACTACAGCAATATTGTGTGGACAATGAGCCCAGAGGAGTCATTGCGCCATAAGTCAATGAGTCCTGAAGATTTTGTGAAGTCTGTGAACAATGCATTGGATTTTGGTTACGGTCCACATCCACACTCTGGTAGTCTTGACTATTACATGGAAAAGTTATTTTCTGACATTGGAAGTACTGCTGCATCTACAAAGGAATGCTTTGAAGTACCTCCAAAAGCAATCGGGGTAGTCTGTGAGAGAATGGCATTTCCATTGTCGCTGAAGCATTCACATGATTATATTTCAAAAAGGTTAGCACTAGTCGGTGATGCAGCTCATACAGTCCATCCCTTAGCTGGCCAAGGTGTCAACTTAGGTTTTGGAGATGCAGCTGCTTTAGCAAAAGTTATCGCTGAAGGAGTTTCTGTGGGTGCTGATTTT-GGGGATATTTCCTTGCTCAAAAGGTATGAGAATAATCGCAAAGCAGCCAATGTTGCAATGGCAGCGCTGCTAGATGGTTTCCAGAAGATGTACTCTGTTGATTTTGGACCCCTCAATGTGCTTAGGGCTGCAGCGTTTCACGGTGCCCAGTACATATCACCACTGAAGAAGAACATAATCTCGTATGCAATGGGCGACGCGAAATGG-CCGCTGTTTTCATAGACAGTAGATCCGGAAACTTTAAATTTGTTAGTTGTTACTGCAGT-GTCGATGTGTTATTCTAAATTAGTATAGTGTACTTTGTCTCCAGTGTTCTCATCCAGAGTAGTAATGCATCACAGGCACACGTTGCAGAGAAGAAATGTAGCTAGAAAGAAATAAATTGGATCTCCT-GGTGATCTAGGATTA-CCTT-GAATGTA-CTCCTCTTGCACTNCAGTAACTCGCTT-TNTGNTTGACCCACAAAGTTCAGATCTGTGCAAGGCAAGATGATATTGAAGTGTTGACTGTTGACGAAGATCAGTCAATCTGTGCAGGTTGCAGTCTAGCACCTCCTTTGCACGTAGATATTCTTTTTCTCGATTTCTACGGGTACTATATCAATCAACTCGTGTGAAAGTTCTATAAATATTTGGGTGGGGTTACTGAGATTTTAAAGAACGATTGTTCAGCTGTTTTTTTAAAAAAAAGGG]

[+] EMBL AK109847             [AACCAAACCCGGCGACGGCACACAGGTTTTAGCACCGGACGGGAGCTCTCCGCCGTCGCCGACGACGACGCCGCCGGGGTGCCCAGCTCGCAGGATCACACAGAGAAGGTTGATGATGTGAAAGCTAGACCCGACGAGCTCGACATTGCTATCGTTGGTGGAGGCATGGTGGGATTGGCTGTTGCTTGTGCATTGTCCAATATGCCATTGACTAAACATCTGAGGGTTGGCATCATTGATAGCAATCCTGCATTGAAGTCAAGAAATTATCTGAAGAAAGATGGTGTACCTGATTCAAGGGTCAGTACTATTACTCCCGCGACCATATCCTTCTTCAGAGATATTGGTGCATGGGATCATGTTCAACAGCAAAGACACGCTTTCTTTGGTAAAATGCAGGTATGGGATTACACTGGACTGGGTTACACAAGGTATAGTGCAAGGGATGTGGGAAAAGAATATCTCGGATGCGTGGTGGAGAACAAGGTGCTTTGCAACTCACTGTTGTTACGATTACAGGAGGAAAATGGAGACATTGAAAAGATGATCTACCCTACTAGACTGATTTCTCTTGCTTTGCCATCAAAGAGCAGACAAGCACCAACAAGGGAAGCAATATCCAGTGGTTACCCTCCAGAAGAATTAAATCGCAGCAATTTAGTTAAACTTGAGCTAAGTGATGGACAAACTTTATATTCAAAACTAGTGGTGGGAGCTGACGGTTCCAAGTCCAATGTAAGGCAAACAGCAGGCATAAAAACAACAGGGTGGAATTATCCTCAAAGTGCAATTATTTGTACAGTGGAGCATATTACCGAAAACGATTGTGCATGGCAGAGGTTTCTCCCTTCTGGGCCAATTGCTCTACTTCCAATAGGTGACAACTACAGCAATATTGTGTGGACAATGAGCCCAGAGGAGTCATTGCGCCATAAGTCAATGAGTCCTGAAGATTTTGTGAAGTCTGTGAACAATGCATTGGATTTTGGTTACGGTCCACATCCACACTCTGGTAGTCTTGACTATTACATGGAAAAGTTATTTTCTGACATTGGAAGTACTGCTGCATCTACAAAGGAATGCTTTGAAGTACCTCCAAAAGCAATCGGGGTAGTCTGTGAGAGAATGGCATTTCCATTGTCGCTGAAGCATTCACATGATTATATTTCAAAAAGGTTAGCACTAGTCGGTGATGCAGCTCATACAGTCCATCCCTTAGCTGGCCAAGGTGTCAACTTAGGTTTTGGAGATGCAGCTGCTTTAGCAAAAGTTATCGCTGAAGGAGTTTCTGTGGGTGCTGATTTT GGGGATATTTCCTTGCTCAAAAGGTATGAGAATAATCGCAAAGCAGCCAATGTTGCAATGGCAGCGCTGCTAGATGGTTTCCAGAAGATGTACTCTGTTGATTTTGGACCCCTCAATGTGCTTAGGGCTGCAGCGTTTCACGGTGCCCAGTACATATCACCACTGAAGAAGAACATAATCTCGTATGCAATGGGCGACGCGAAATGG CCGCTGTTTTCATAGACAGTAGATCCGGAAACTTTAAATTTGTTAGTTGTTACTGCAGT GTCGATGTGTTATTCTAAATTAGTATAGTGTACTTTGTCTCCAGTGTTCTCATCCAGAGTAGTAATGCATCACAGGCACACGTTGCAGAGAAGAAATGTAGCTAGAAAGAAATAAATTGGATCTCCT GGTGATCTAGGATTA                                                                                                                                                                                                                                                                                             ]
[+] EMBL CA765660             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               aagggGGATTTTGGTTACGGTCCACATCCACACTCTGGTAGTCTTGACTCTTACATGGAAAAGTTATTTTCTGACATTGGAAGTACTGCTGCATCTACAAAGGAATGCTTTGAAGTACCTCCAAAAGCAATCGGGGTAGTCTGTGAGAGAATGGCATTTCCATTGTCGCTGAAGCGTTCACATGATTATATTTCAAAAAGGTTAGCACTAGTCGGTGATGCAGCTCATACAGTCCATCCCTTAGCTGGCCAAGGTGTCAACTTAGGTTTTGGAGATGCAGCTGCTTTAGCAAAAGTTATCGCTGAAGGAGTTTCTGTGGGTGCTGATTTT GGGGATATTTCCTTGCTCAAAAGGTATGAGAATGATCGCAAAGCAGCCAATGTTGCAATGGCAGCGCTGCTAGATGGTTTCCAGAAGATGTACTCTGTTGATTTTGGACCCCTCAATGTGCTTAGGGCTGCAGCGTTTCACGGTGCCCAGTACATATCACCACTGAAGAAGAACATAATCTCGTATGCAATGGGCGACGCGAAATGGCCCGCTGTTTTCATAGACAGTAGATCCGGAAACTTTAAATTTGTTAGTTGTTACTGCAGTGGTCGATGTGTTATTCTAAATTAGTATAGTGTACTTTGTCTCTAGTGTTCTCATCCAGAGTAGTAATGCATCACAGGCACACGTTGCAGAGAAGAAATGTAGCTAGAAAGAAATAAATTGGATCTNCTNGGTGATCTANGATTACCCTTGGAATGTACCTCCTCTTGCACTNCAGTAACTCGCTT TNTGNT                                                                                                                                                                                                                                             ]
[-] EMBL CB676517             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TCGCTGAAGGAGTTTCTGGGGGTGCTGATTTTGGGGGATATTTCCTTGCTCAAAAGGTATGAGAATAATCGCAAAGCAGCCAATGTTGCAATGGCAGCGCTGCTAGATGGTTTCCAGAAGATGTACTCTGTTGATTTTGGACCCCTCAATGTGCTTAGGGCTGCAGCGTTTCACGGTGCCCAGTACATATCACCACTGAAGAAGAACATAATCTCGTATGCAATGGGCGACGCGAAATGG CCGCTGTTTTCATAGACAGTAGATCCGGAAACTTTAAATTTGTTAGTTGTTACTGCAGT GTCGATGTGTTATTCTAAATTAGTATAGTGTACTTTGTCTCCAGTGTTCTCATCCAGAGTAGTAATGCATCACAGGCACACGTTGCAGAGAAGAAATGTAGCTAGAAAGAAATAAATTGGATCTCCT GGTGATCTAGGATTA CCTT GAATGTA CTCCTCTTGCACTCCAGTAACTCGCTTCTGT TTTGACCCACAAAGTTCAGATCTGTGCAAGGCAAGATGATATTGAAGTGTTGACTGTTGACGAAGATCAGTCAATCTGTGCAGGTTGCAGTCTAGCACCTCCTTTGCACGTAGATATTCTTTTTCTCGATTTCTACGGGTACTATATCAATCAACTCGTGTGAAAGTTCTATAAATATTTGGGTGGGGTTACTGAGATTTTAAAGAACGATTGTTCAGCTGTTTTTTTAAAAAAAAGGG]


>consensus_8020#0 AACCAAACCCGGCGACGGCACACAGGTTTTAGCACCGGACGGGAGCTCTCCGCCGTCGCC GACGACGACGCCGCCGGGGTGCCCAGCTCGCAGGATCACACAGAGAAGGTTGATGATGTG AAAGCTAGACCCGACGAGCTCGACATTGCTATCGTTGGTGGAGGCATGGTGGGATTGGCT GTTGCTTGTGCATTGTCCAATATGCCATTGACTAAACATCTGAGGGTTGGCATCATTGAT AGCAATCCTGCATTGAAGTCAAGAAATTATCTGAAGAAAGATGGTGTACCTGATTCAAGG GTCAGTACTATTACTCCCGCGACCATATCCTTCTTCAGAGATATTGGTGCATGGGATCAT GTTCAACAGCAAAGACACGCTTTCTTTGGTAAAATGCAGGTATGGGATTACACTGGACTG GGTTACACAAGGTATAGTGCAAGGGATGTGGGAAAAGAATATCTCGGATGCGTGGTGGAG AACAAGGTGCTTTGCAACTCACTGTTGTTACGATTACAGGAGGAAAATGGAGACATTGAA AAGATGATCTACCCTACTAGACTGATTTCTCTTGCTTTGCCATCAAAGAGCAGACAAGCA CCAACAAGGGAAGCAATATCCAGTGGTTACCCTCCAGAAGAATTAAATCGCAGCAATTTA GTTAAACTTGAGCTAAGTGATGGACAAACTTTATATTCAAAACTAGTGGTGGGAGCTGAC GGTTCCAAGTCCAATGTAAGGCAAACAGCAGGCATAAAAACAACAGGGTGGAATTATCCT CAAAGTGCAATTATTTGTACAGTGGAGCATATTACCGAAAACGATTGTGCATGGCAGAGG TTTCTCCCTTCTGGGCCAATTGCTCTACTTCCAATAGGTGACAACTACAGCAATATTGTG TGGACAATGAGCCCAGAGGAGTCATTGCGCCATAAGTCAATGAGTCCTGAAGATTTTGTG AAGTCTGTGAACAATGCATTGGATTTTGGTTACGGTCCACATCCACACTCTGGTAGTCTT GACTATTACATGGAAAAGTTATTTTCTGACATTGGAAGTACTGCTGCATCTACAAAGGAA TGCTTTGAAGTACCTCCAAAAGCAATCGGGGTAGTCTGTGAGAGAATGGCATTTCCATTG TCGCTGAAGCATTCACATGATTATATTTCAAAAAGGTTAGCACTAGTCGGTGATGCAGCT CATACAGTCCATCCCTTAGCTGGCCAAGGTGTCAACTTAGGTTTTGGAGATGCAGCTGCT TTAGCAAAAGTTATCGCTGAAGGAGTTTCTGTGGGTGCTGATTTTGGGGATATTTCCTTG CTCAAAAGGTATGAGAATAATCGCAAAGCAGCCAATGTTGCAATGGCAGCGCTGCTAGAT GGTTTCCAGAAGATGTACTCTGTTGATTTTGGACCCCTCAATGTGCTTAGGGCTGCAGCG TTTCACGGTGCCCAGTACATATCACCACTGAAGAAGAACATAATCTCGTATGCAATGGGC GACGCGAAATGGCCGCTGTTTTCATAGACAGTAGATCCGGAAACTTTAAATTTGTTAGTT GTTACTGCAGTGTCGATGTGTTATTCTAAATTAGTATAGTGTACTTTGTCTCCAGTGTTC TCATCCAGAGTAGTAATGCATCACAGGCACACGTTGCAGAGAAGAAATGTAGCTAGAAAG AAATAAATTGGATCTCCTGGTGATCTAGGATTACCTTGAATGTACTCCTCTTGCACTNCA GTAACTCGCTTTNTGNTTGACCCACAAAGTTCAGATCTGTGCAAGGCAAGATGATATTGA AGTGTTGACTGTTGACGAAGATCAGTCAATCTGTGCAGGTTGCAGTCTAGCACCTCCTTT GCACGTAGATATTCTTTTTCTCGATTTCTACGGGTACTATATCAATCAACTCGTGTGAAA GTTCTATAAATATTTGGGTGGGGTTACTGAGATTTTAAAGAACGATTGTTCAGCTGTTTT TTTAAAAAAAAGGG



consensusID : consensus_8020#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 757
fasta sequence
                              [GGCCTTCTGCGACGTGCCGCCTTCGCTCCAGGATGCGGCCGCCGGGGTGCCCAGCTCGCAGGATCACACAGAGAAGGTTGATGATGTGAAAGCTAGACCCGACGAGCTCGACATTGCTATCGTTGGTGGAGGCATGGTGGGATTGGCTGTTGCTTGTGCATTGTCCAATATGCCATTGACTAAACATCTGAGGGTTGGCATCATTGATAGCAATCCTGCATTGAAGTCAAGAAATTATCTGAAGAAAGATGGTGTACCTGATTCAAGGGTCAGTACTATTACTCCCGCGACCATATCCTTCTTCAGAGATATTGGTGCATGGGATCATGTTCAACAGCAAAGACACGCTTTCTTTGGTAAAATGCAGGTATGGGATTACACTGGACTGGGTTACACAAGGTATAGTGCAAGGGATGTGGGAAAAGAATATCTCGGATGCGTGGTGGAGAACAAGGTGCTTTGCAACTCACTGTTGTTACGATTACAGGAGGAAAATGGAGACATTGAAAAGATGATCTACCCTACTAGACTGATTTCTCTTGCTTTGCCATCAAAGAGCAGACAAGCACCAACAAGGGAAGCAATATCCAGTGGTTACCCTCCAGAAGAATTAAATCGCAGCAATTTAGTTAAACTTGAGCTAAGTGATGGACAAACTTTATATTCAAAACTAGTGGTGGGAGCTGACGGTTCCAAGTCCAATGTAAGGCAAACAGCAGGCATAAAAACAACAGGGTGGAATTATCCTCAAAGTGCA]

[+] EMBL CB676516             [GGCCTTCTGCGACGTGCCGCCTTCGCTCCAGGATGCGGCCGCCGGGGTGCCCAGCTCGCAGGATCACACAGAGAAGGTTGATGATGTGAAAGCTAGACCCGACGAGCTCGACATTGCTATCGTTGGTGGAGGCATGGTGGGATTGGCTGTTGCTTGTGCATTGTCCAATATGCCATTGACTAAACATCTGAGGGTTGGCATCATTGATAGCAATCCTGCATTGAAGTCAAGAAATTATCTGAAGAAAGATGGTGTACCTGATTCAAGGGTCAGTACTATTACTCCCGCGACCATATCCTTCTTCAGAGATATTGGTGCATGGGATCATGTTCAACAGCAAAGACACGCTTTCTTTGGTAAAATGCAGGTATGGGATTACACTGGACTGGGTTACACAAGGTATAGTGCAAGGGATGTGGGAAAAGAATATCTCGGATGCGTGGTGGAGAACAAGGTGCTTTGCAACTCACTGTTGTTACGATTACAGGAGGAAAATGGAGACATTGAAAAGATGATCTACCCTACTAGACTGATTTCTCTTGCTTTGCCATCAAAGAGCAGACAAGCACCAACAAGGGAAGCAATATCCAGTGGTTACCCTCCAGAAGAATTAAATCGCAGCAATTTAGTTAAACTTGAGCTAAGTGATGGACAAACTTTATATTCAAAACTAGTGGTGGGAGCTGACGGTTCCAAGTCCAATGTAAGGCAAACAGCAGGCATAAAAACAACAGGGTGGAATTATCCTCAAAGTGCA]


>consensus_8020#1 GGCCTTCTGCGACGTGCCGCCTTCGCTCCAGGATGCGGCCGCCGGGGTGCCCAGCTCGCA GGATCACACAGAGAAGGTTGATGATGTGAAAGCTAGACCCGACGAGCTCGACATTGCTAT CGTTGGTGGAGGCATGGTGGGATTGGCTGTTGCTTGTGCATTGTCCAATATGCCATTGAC TAAACATCTGAGGGTTGGCATCATTGATAGCAATCCTGCATTGAAGTCAAGAAATTATCT GAAGAAAGATGGTGTACCTGATTCAAGGGTCAGTACTATTACTCCCGCGACCATATCCTT CTTCAGAGATATTGGTGCATGGGATCATGTTCAACAGCAAAGACACGCTTTCTTTGGTAA AATGCAGGTATGGGATTACACTGGACTGGGTTACACAAGGTATAGTGCAAGGGATGTGGG AAAAGAATATCTCGGATGCGTGGTGGAGAACAAGGTGCTTTGCAACTCACTGTTGTTACG ATTACAGGAGGAAAATGGAGACATTGAAAAGATGATCTACCCTACTAGACTGATTTCTCT TGCTTTGCCATCAAAGAGCAGACAAGCACCAACAAGGGAAGCAATATCCAGTGGTTACCC TCCAGAAGAATTAAATCGCAGCAATTTAGTTAAACTTGAGCTAAGTGATGGACAAACTTT ATATTCAAAACTAGTGGTGGGAGCTGACGGTTCCAAGTCCAATGTAAGGCAAACAGCAGG CATAAAAACAACAGGGTGGAATTATCCTCAAAGTGCA



consensusID : consensus_8020#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 593
fasta sequence
                              [AGCTCGCANGATCACACAGAGAAGGTTGATGATGTGAAAGCTAGACCCGACGAGCTCGACATTGCTATCGTTGGTGGAGGCATGGTGGGATTGGCTGTTGCTTGTGCATTGTGTAGCCAATATGCCATTGACTAAACATCTGAGGGTTGGCATCATTGATAGCAATCCTGCATTGAAGTCAAGAAATTATCTGAAGAAAGATGGTGTACCTGATTCAAGGGTCAGTACTATTACTCCCGCGACCATATCCTTCTTCAGAGGTACAGTTTTTAATCGAACATGCGTTGATATTATCTGTACGTGTTCAGAATTTTTCAGGCGCTTGTACTTTGAATTAAGTTTTTCTTAACATGGTTGGGTACTTTGTTGATGACGTTTTATGTTGGTTTTGAGCAGATATATAAACATAATGCTATAATCGTTTTTGTATTACTTCTATGTCTCCATCATTTTGTAAAGTTATCTAGTTACATCATTAGTAGTTTATTTTATTATCTTCCTTTTTACTCTTGTGGATATCTGCTTCATTATATAAATTAGTTGATAGCCTACCGCCTACCTGGGATGATCACTATGCAATATTCGGCTGAACT]

[-] EMBL AU164218             [AGCTCGCANGATCACACAGAGAAGGTTGATGATGTGAAAGCTAGACCCGACGAGCTCGACATTGCTATCGTTGGTGGAGGCATGGTGGGATTGGCTGTTGCTTGTGCATTGTGTAGCCAATATGCCATTGACTAAACATCTGAGGGTTGGCATCATTGATAGCAATCCTGCATTGAAGTCAAGAAATTATCTGAAGAAAGATGGTGTACCTGATTCAAGGGTCAGTACTATTACTCCCGCGACCATATCCTTCTTCAGAGGTACAGTTTTTAATCGAACATGCGTTGATATTATCTGTACGTGTTCAGAATTTTTCAGGCGCTTGTACTTTGAATTAAGTTTTTCTTAACATGGTTGGGTACTTTGTTGATGACGTTTTATGTTGGTTTTGAGCAGATATATAAACATAATGCTATAATCGTTTTTGTATTACTTCTATGTCTCCATCATTTTGTAAAGTTATCTAGTTACATCATTAGTAGTTTATTTTATTATCTTCCTTTTTACTCTTGTGGATATCTGCTTCATTATATAAATTAGTTGATAGCCTACCGCCTACCTGGGATGATCACTATGCAATATTCGGCTGAACT]


>consensus_8020#2 AGCTCGCANGATCACACAGAGAAGGTTGATGATGTGAAAGCTAGACCCGACGAGCTCGAC ATTGCTATCGTTGGTGGAGGCATGGTGGGATTGGCTGTTGCTTGTGCATTGTGTAGCCAA TATGCCATTGACTAAACATCTGAGGGTTGGCATCATTGATAGCAATCCTGCATTGAAGTC AAGAAATTATCTGAAGAAAGATGGTGTACCTGATTCAAGGGTCAGTACTATTACTCCCGC GACCATATCCTTCTTCAGAGGTACAGTTTTTAATCGAACATGCGTTGATATTATCTGTAC GTGTTCAGAATTTTTCAGGCGCTTGTACTTTGAATTAAGTTTTTCTTAACATGGTTGGGT ACTTTGTTGATGACGTTTTATGTTGGTTTTGAGCAGATATATAAACATAATGCTATAATC GTTTTTGTATTACTTCTATGTCTCCATCATTTTGTAAAGTTATCTAGTTACATCATTAGT AGTTTATTTTATTATCTTCCTTTTTACTCTTGTGGATATCTGCTTCATTATATAAATTAG TTGATAGCCTACCGCCTACCTGGGATGATCACTATGCAATATTCGGCTGAACT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8020#0      AACCAAACCCGGCGACGGCACACAGGTTTTAGCACCGGACGGGAGCTCTCCGCCGTCGC- 59
consensus_8020#1      ---------------------------------GGCCTTCTGCGACGTGCCGCCTTCGCT 27
consensus_8020#2      ------------------------------------------------------------
                                                                                  

consensus_8020#0      CGACGACGACGCCGCCGGGGTGCCCAGCTCGCAGGATCACACAGAGAAGGTTGATGATGT 119
consensus_8020#1      CCAGGATGCGGCCGCCGGGGTGCCCAGCTCGCAGGATCACACAGAGAAGGTTGATGATGT 87
consensus_8020#2      -------------------------AGCTCGCANGATCACACAGAGAAGGTTGATGATGT 35
                                               ******** **************************

consensus_8020#0      GAAAGCTAGACCCGACGAGCTCGACATTGCTATCGTTGGTGGAGGCATGGTGGGATTGGC 179
consensus_8020#1      GAAAGCTAGACCCGACGAGCTCGACATTGCTATCGTTGGTGGAGGCATGGTGGGATTGGC 147
consensus_8020#2      GAAAGCTAGACCCGACGAGCTCGACATTGCTATCGTTGGTGGAGGCATGGTGGGATTGGC 95
                      ************************************************************

consensus_8020#0      TGTTGCTTGTGCATTGT----CCAATATGCCATTGACTAAACATCTGAGGGTTGGCATCA 235
consensus_8020#1      TGTTGCTTGTGCATTGT----CCAATATGCCATTGACTAAACATCTGAGGGTTGGCATCA 203
consensus_8020#2      TGTTGCTTGTGCATTGTGTAGCCAATATGCCATTGACTAAACATCTGAGGGTTGGCATCA 155
                      *****************    ***************************************

consensus_8020#0      TTGATAGCAATCCTGCATTGAAGTCAAGAAATTATCTGAAGAAAGATGGTGTACCTGATT 295
consensus_8020#1      TTGATAGCAATCCTGCATTGAAGTCAAGAAATTATCTGAAGAAAGATGGTGTACCTGATT 263
consensus_8020#2      TTGATAGCAATCCTGCATTGAAGTCAAGAAATTATCTGAAGAAAGATGGTGTACCTGATT 215
                      ************************************************************

consensus_8020#0      CAAGGGTCAGTACTATTACTCCCGCGACCATATCCTTCTTCAGAGATATTGGTGC-ATGG 354
consensus_8020#1      CAAGGGTCAGTACTATTACTCCCGCGACCATATCCTTCTTCAGAGATATTGGTGC-ATGG 322
consensus_8020#2      CAAGGGTCAGTACTATTACTCCCGCGACCATATCCTTCTTCAGAGGTACAGTTTTTAATC 275
                      ********************************************* **  * *   *   

consensus_8020#0      GATCATGT-TCAACAGCAAAGACACGCTTTCTTTGGTAAAATGCAGGTATGGGATTACAC 413
consensus_8020#1      GATCATGT-TCAACAGCAAAGACACGCTTTCTTTGGTAAAATGCAGGTATGGGATTACAC 381
consensus_8020#2      GAACATGCGTTGATATTATCTGTACG---TGTTCAGAATTTTTCAGGCGCTTG--TACTT 330
                      ** ****  *  * *  *     ***   * **  * *   * ****     *  ***  

consensus_8020#0      TGGACTGGGTTACACAAGGTATAGT-GCAAGGGATGTGGGAAAAGAAT-ATCTCGGATGC 471
consensus_8020#1      TGGACTGGGTTACACAAGGTATAGT-GCAAGGGATGTGGGAAAAGAAT-ATCTCGGATGC 439
consensus_8020#2      TGAATTAAGTTTTTCTTAACATGGTTGGGTACTTTGTTGATGACGTTTTATGTTGGTTTT 390
                      ** * *  ***   *     ** ** *       *** *   * *  * ** * ** *  

consensus_8020#0      GTGGTGGAGAACAAGGTGCTTTGCAACTCACTGTTGTTACGATTACAGGAGGAAAATGGA 531
consensus_8020#1      GTGGTGGAGAACAAGGTGCTTTGCAACTCACTGTTGTTACGATTACAGGAGGAAAATGGA 499
consensus_8020#2      G-AGCAGATATATAAACATAATGCTA-TAATCGTTTTTGT-ATTACTTCTATGTCTCCAT 447
                      *  *  ** *   *       *** * * *  *** **   *****              

consensus_8020#0      GACATTGAAAAGATG---ATCTACCCTACTAG--ACTGATTTCTCT---TGCTTTGCCAT 583
consensus_8020#1      GACATTGAAAAGATG---ATCTACCCTACTAG--ACTGATTTCTCT---TGCTTTGCCAT 551
consensus_8020#2      CATTTTGTAAAGTTATCTAGTTACATCATTAGTAGTTTATTTTATTATCTTCCTTTTTAC 507
                       *  *** **** *    *  ***   * ***    * ****   *   * * **   * 

consensus_8020#0      CAAAGAGCAGACAAGCACCAACAAGGGAAGCAATATCCAGTGGTTACCCT--CCAGAAGA 641
consensus_8020#1      CAAAGAGCAGACAAGCACCAACAAGGGAAGCAATATCCAGTGGTTACCCT--CCAGAAGA 609
consensus_8020#2      TCTTGTGGATATCTGCTTCATTATATAAATTAGTTGATAGCCTACCGCCTACCTGGGATG 567
                          * * * *   **  **  *    **  * *    **       ***  *  * *  

consensus_8020#0      ATTAAATCGCAGCAATTTAGTTAAACTTGAGCTAAGTGATGGACAAACTTTATATTCAAA 701
consensus_8020#1      ATTAAATCGCAGCAATTTAGTTAAACTTGAGCTAAGTGATGGACAAACTTTATATTCAAA 669
consensus_8020#2      ATCACTATGCAATA-TTCGGCTGAACT--------------------------------- 593
                      ** *    ***  * **  * * ****                                 

consensus_8020#0      ACTAGTGGTGGGAGCTGACGGTTCCAAGTCCAATGTAAGGCAAACAGCAGGCATAAAAAC 761
consensus_8020#1      ACTAGTGGTGGGAGCTGACGGTTCCAAGTCCAATGTAAGGCAAACAGCAGGCATAAAAAC 729
consensus_8020#2      ------------------------------------------------------------
                                                                                  

consensus_8020#0      AACAGGGTGGAATTATCCTCAAAGTGCAATTATTTGTACAGTGGAGCATATTACCGAAAA 821
consensus_8020#1      AACAGGGTGGAATTATCCTCAAAGTGCA-------------------------------- 757
consensus_8020#2      ------------------------------------------------------------
                                                                                  

consensus_8020#0      CGATTGTGCATGGCAGAGGTTTCTCCCTTCTGGGCCAATTGCTCTACTTCCAATAGGTGA 881
consensus_8020#1      ------------------------------------------------------------
consensus_8020#2      ------------------------------------------------------------
                                                                                  

consensus_8020#0      CAACTACAGCAATATTGTGTGGACAATGAGCCCAGAGGAGTCATTGCGCCATAAGTCAAT 941
consensus_8020#1      ------------------------------------------------------------
consensus_8020#2      ------------------------------------------------------------
                                                                                  

consensus_8020#0      GAGTCCTGAAGATTTTGTGAAGTCTGTGAACAATGCATTGGATTTTGGTTACGGTCCACA 1001
consensus_8020#1      ------------------------------------------------------------
consensus_8020#2      ------------------------------------------------------------
                                                                                  

consensus_8020#0      TCCACACTCTGGTAGTCTTGACTATTACATGGAAAAGTTATTTTCTGACATTGGAAGTAC 1061
consensus_8020#1      ------------------------------------------------------------
consensus_8020#2      ------------------------------------------------------------
                                                                                  

consensus_8020#0      TGCTGCATCTACAAAGGAATGCTTTGAAGTACCTCCAAAAGCAATCGGGGTAGTCTGTGA 1121
consensus_8020#1      ------------------------------------------------------------
consensus_8020#2      ------------------------------------------------------------
                                                                                  

consensus_8020#0      GAGAATGGCATTTCCATTGTCGCTGAAGCATTCACATGATTATATTTCAAAAAGGTTAGC 1181
consensus_8020#1      ------------------------------------------------------------
consensus_8020#2      ------------------------------------------------------------
                                                                                  

consensus_8020#0      ACTAGTCGGTGATGCAGCTCATACAGTCCATCCCTTAGCTGGCCAAGGTGTCAACTTAGG 1241
consensus_8020#1      ------------------------------------------------------------
consensus_8020#2      ------------------------------------------------------------
                                                                                  

consensus_8020#0      TTTTGGAGATGCAGCTGCTTTAGCAAAAGTTATCGCTGAAGGAGTTTCTGTGGGTGCTGA 1301
consensus_8020#1      ------------------------------------------------------------
consensus_8020#2      ------------------------------------------------------------
                                                                                  

consensus_8020#0      TTTTGGGGATATTTCCTTGCTCAAAAGGTATGAGAATAATCGCAAAGCAGCCAATGTTGC 1361
consensus_8020#1      ------------------------------------------------------------
consensus_8020#2      ------------------------------------------------------------
                                                                                  

consensus_8020#0      AATGGCAGCGCTGCTAGATGGTTTCCAGAAGATGTACTCTGTTGATTTTGGACCCCTCAA 1421
consensus_8020#1      ------------------------------------------------------------
consensus_8020#2      ------------------------------------------------------------
                                                                                  

consensus_8020#0      TGTGCTTAGGGCTGCAGCGTTTCACGGTGCCCAGTACATATCACCACTGAAGAAGAACAT 1481
consensus_8020#1      ------------------------------------------------------------
consensus_8020#2      ------------------------------------------------------------
                                                                                  

consensus_8020#0      AATCTCGTATGCAATGGGCGACGCGAAATGGCCGCTGTTTTCATAGACAGTAGATCCGGA 1541
consensus_8020#1      ------------------------------------------------------------
consensus_8020#2      ------------------------------------------------------------
                                                                                  

consensus_8020#0      AACTTTAAATTTGTTAGTTGTTACTGCAGTGTCGATGTGTTATTCTAAATTAGTATAGTG 1601
consensus_8020#1      ------------------------------------------------------------
consensus_8020#2      ------------------------------------------------------------
                                                                                  

consensus_8020#0      TACTTTGTCTCCAGTGTTCTCATCCAGAGTAGTAATGCATCACAGGCACACGTTGCAGAG 1661
consensus_8020#1      ------------------------------------------------------------
consensus_8020#2      ------------------------------------------------------------
                                                                                  

consensus_8020#0      AAGAAATGTAGCTAGAAAGAAATAAATTGGATCTCCTGGTGATCTAGGATTACCTTGAAT 1721
consensus_8020#1      ------------------------------------------------------------
consensus_8020#2      ------------------------------------------------------------
                                                                                  

consensus_8020#0      GTACTCCTCTTGCACTNCAGTAACTCGCTTTNTGNTTGACCCACAAAGTTCAGATCTGTG 1781
consensus_8020#1      ------------------------------------------------------------
consensus_8020#2      ------------------------------------------------------------
                                                                                  

consensus_8020#0      CAAGGCAAGATGATATTGAAGTGTTGACTGTTGACGAAGATCAGTCAATCTGTGCAGGTT 1841
consensus_8020#1      ------------------------------------------------------------
consensus_8020#2      ------------------------------------------------------------
                                                                                  

consensus_8020#0      GCAGTCTAGCACCTCCTTTGCACGTAGATATTCTTTTTCTCGATTTCTACGGGTACTATA 1901
consensus_8020#1      ------------------------------------------------------------
consensus_8020#2      ------------------------------------------------------------
                                                                                  

consensus_8020#0      TCAATCAACTCGTGTGAAAGTTCTATAAATATTTGGGTGGGGTTACTGAGATTTTAAAGA 1961
consensus_8020#1      ------------------------------------------------------------
consensus_8020#2      ------------------------------------------------------------
                                                                                  

consensus_8020#0      ACGATTGTTCAGCTGTTTTTTTAAAAAAAAGGG 1994
consensus_8020#1      ---------------------------------
consensus_8020#2      ---------------------------------
                                                       




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)