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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8032#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1706 fasta sequence
[AACCCGCAACCCCACATCTCTCAGCCCCCGACCCCACTTCCGATCTCCACCCCCATCTCGCCGGCGATGCCGCCGCCGCCGTCGGCCACGGCGGGGCGGAGGTCCCCATTCTCCGCCCTCCTCCTCTACGTCACCTTCGCGCTCGTCATCCTGCTCCTCCTCACCTCCTACTCACCCAGCATCCCGCACCGGGGCCGCAGCCTCCACCGCCGCCTCAAGCTCCACCCCAGGAACCCCTCCCTCTCCGGGGCCGGCGCGGGGGCACCCACCGGAGGAAACGGGGCTCCGCAGAAGCAGCAGAACCACCACCACGCGGCGCCCTTCGACCCGGAGATCGCGGAGCTGGAGCGGCGGCTGGAGGACAAGGAGTGGGAGCGCGAGCACTACCGCATCCTGCACGGCGACGGCGGCGGAGGGGAGGCGGACGAGCACATTTGGGTTCCGGGAGGAGTTCCTCAGGGAGGACGAGGACTTCATCAACGACGACGAGCTCACCAGGTGGAACCTCGAGCAGTCCAGAGCCGACCAGCTCCACCGCTCCGCTCGGGAGATGGAGCTCTACGACAAGAATGGCGACGGGGTTGTCTCCTACGGGGACTTCCGGGCTCAGCACAACGAATCGAGTGGAGAGGTTAATTCGCTGGGGTTCCCATGGTGGAAAGAGGAGCATTTCAATGCTTCGGATGCAGATGGCCATGGTTTCCTTAATAAAACCGAGTTTAATGACTTCCTTAATCCCAGCGATTCAGAGAATCCCCAAATTATCAATTTGCTCTGCAAACAAGAAATAAGACAGAGAGACAAGGATGGTGATGGAAAGCTAAACTTTGAAGAATATTTTCATGGGCTACATGACCATATACATGGTTATGATTACGAGAACGCAGATATTTCCCATATTGGGAACAATACAGTAGCTAAGGAGCGGTTTTCCAAACTTGACAAAGACAGTGATGGGTTTATTTCAGAGCACGAACTAGAACCTGTTCTTGATAAGCTCCATCTTTCAGAACG-TTATTATGCTAGACAACAAGCTGCCCATGCTATTTCAGAG-GCTGACAAAGATCATGATGGAAGACTAACTTTGGATGAGATGATTGAGAACCCGTATGCATTTTATGGCAGCGTCTTCCTTAGCGACGACGAAGACTATTTTCATGATGAATTCCGCT-GAGGTGTCTGCAGATT-GTTGGTGTTGCAAGTATGGTTTGC-GGATCGATCCAA-GATGCTTTCACCATCAGACT-GAATGATCT-AGGAGCTGCTAACCACA-CAAAAAGAGAAC-TTCAGCTGTTTGGTA-CCCTAGAGTTCTTTCTATCAGGTACTCAGGTGGAGCACCAAGCT-GGCTAATGCC-AGCGATATTAGGTTACATACAT-GCCAACTT-GCCT-GCCTTTATTTAGGGTGAGCCGCTAACCTGACCTGACATATGTTGTGTATTATCTCATCAGTTTTGTAAAATG-CAATGGATGGAGTCTAGGAGAGCAATCATAGTAGAATGGACATGACCAGACCAGTGAGCTAATTGTGCCTTTCTTCTTTCTTTTTTTCTGAAGTGTGAGCTAAATTATGCCTTCCTTGTTGAAACATAATGACTGGATTGCTGATGGCGCTCCGACCGACAGTTTTCCTCGGCGCATGAGTGCGTCGTGGACGTGGAATGATGGAATTATTGTAGTTGCGTCGATCACATGGAAATGCATTATTCGGGA]
[+] EMBL AK105334 [AACCCGCAACCCCACATCTCTCAGCCCCCGACCCCACTTCCGATCTCCACCCCCATCTCGCCGGCGATGCCGCCGCCGCCGTCGGCCACGGCGGGGCGGAGGTCCCCATTCTCCGCCCTCCTCCTCTACGTCACCTTCGCGCTCGTCATCCTGCTCCTCCTCACCTCCTACTCACCCAGCATCCCGCACCGGGGCCGCAGCCTCCACCGCCGCCTCAAGCTCCACCCCAGGAACCCCTCCCTCTCCGGGGCCGGCGCGGGGGCACCCACCGGAGGAAACGGGGCTCCGCAGAAGCAGCAGAACCACCACCACGCGGCGCCCTTCGACCCGGAGATCGCGGAGCTGGAGCGGCGGCTGGAGGACAAGGAGTGGGAGCGCGAGCACTACCGCATCCTGCACGGCGACGGCGGCGGAGGGGAGGCGGACGAGCACATTTGGGTTCCGGGAGGAGTTCCTCAGGGAGGACGAGGACTTCATCAACGACGACGAGCTCACCAGGTGGAACCTCGAGCAGTCCAGAGCCGACCAGCTCCACCGCTCCGCTCGGGAGATGGAGCTCTACGACAAGAATGGCGACGGGGTTGTCTCCTACGGGGACTTCCGGGCTCAGCACAACGAATCGAGTGGAGAGGTTAATTCGCTGGGGTTCCCATGGTGGAAAGAGGAGCATTTCAATGCTTCGGATGCAGATGGCCATGGTTTCCTTAATAAAACCGAGTTTAATGACTTCCTTAATCCCAGCGATTCAGAGAATCCCCAAATTATCAATTTGCTCTGCAAACAAGAAATAAGACAGAGAGACAAGGATGGTGATGGAAAGCTAAACTTTGAAGAATATTTTCATGGGCTACATGACCATATACATGGTTATGATTACGAGAACGCAGATATTTCCCATATTGGGAACAATACAGTAGCTAAGGAGCGGTTTTCCAAACTTGACAAAGACAGTGATGGGTTTATTTCAGAGCACGAACTAGAACCTGTTCTTGATAAGCTCCATCTTTCAGAACG TTATTATGCTAGACAACAAGCTGCCCATGCTATTTCAGAG GCTGACAAAGATCATGATGGAAGACTAACTTTGGATGAGATGATTGAGAACCCGTATGCATTTTATGGCAGCGTCTTCCTTAGCGACGACGAAGACTATTTTCATGATGAATTCCGCT GAGGTGTCTGCAGATT GTTGGTGTTGCAAGTATGGTTTGC GGATCGATCCAA GATGCTTTCACCATCAGACT GAATGATCT AGGAGCTGCTAACCACA CAAAAAGAGAAC TTCAGCTGTTTGGTA CCCTAGAGTTCTTTCTATCAGGTACTCAGGTGGAGCACCAAGCT GGCTAATGCC AGCGATATTAGGTTACATACAT GCCAACTT GCCT GCCTTTATTTAGGGTGAGCCGCTAACCTGACCTGACATATGTTGTGTATTATCTCATCAGTTTTGTAAAATG CAATGGATGGAGTCTAGGAGAGCAATCATAGTAGAATGGACATGACCAGACCAGTGAGCTAATTGTGCCTTTCTTCTTTCTTTTTTTCTGAAGTGTGAGCTAAATTATGCCTTCCTTGTTGAAACATAATGACTGGATTGCTGATGGCGCTCCGACCGACAGTTTTCCTCGGCGCATGAGTGCGTCGTGGACGTGGAATGATGGAATTATTGTAGTTGCGTCGATCACATGGAAATGCATTATTCGGGA]
[+] EMBL CA765248 [ CTCCTACGGGGACTTCCGGGCTCAGCACAACGAATCGAGTGGAGAGGTTGATTCGCTGGGGTTCCCATGGTGGAAAGAGGAGCATTTCAATGCTTCGGATGCAGATGGCGATGGTTTCCTTAATAAAACCGAGTTTAATGACTTCCTTAATCCCAGCGATTCAGAGAATCCCCAAATTATCAATTTGCTCTGCAAACAAGAAATAAGACAGAGAGACAAGGATGGTGATGGAAAGCTAAACTTTGAAGAATATTTTCATGGGCTACATGACCATATACATGGTTATGATGACGAGAACGCAGATATTTCCCATATTGGGAACAATACAGTAGCTAAGGAGCGGTTTTCCAAACTTGACAAAGACAGTGATGGGTTTATTTCAGAGCACGAACTAGAACCTGTTCTTGATAAGCTCCATCTTTCAGAACG TTATTATGCTAGACAACAAGCTGCCCATGCTATTTCAGAG GCTGACAAAGATCATGATGGAAGACTAACTTTGGATGAGATGATTGAGAACCCGTGTGCATTTTATGGCAGCGTCTTCCTTAGCGACGACGAAGACTATTTTCATGATGAATTCCGCTGGAGGCGTCTGCAGATTGGTTGGTGTTGCAAGTATGGTTTGCAGAATCGATCCAAGGATGCTTTCACCATCAGACTGGAATGATCTAAGGAGCTGCTAACCACA CAAAAAGAGAACTTTCAGCTGGTTGGTACCCCTANAGNTCTTTCTATCANGTACTCANGNGGAGCACCAAGCT GGCTAATGGC AGCGATATTANGGTACATAC ]
[-] EMBL CB641616 [ CCATGGTTTCCTTAATAAAACCGAGTTTAATGACTTCCTTAATCCCAGCGATTCAGAGAATCCCCAAATTATCAATTTGCTCTGCAAACAAGAAATAAGACAGAGAGACAAGGATGGTGATGGAAAGCTAAACTTTGAAGAATATTTTCATGGGCTACATGACCATATACATGGTTATGATTACGAGAACGCAGATATTTCCCATATTGGGAACAATACAGTAGCTAAGGAGCGGTTTTCCAAACTTGACAAAGACAGTGATGGGTTTATTTCAGAGCACGAACTAGAACCTGTTCTTGATAAGCTCCATCTTTCAGAACG TTATTATGCTAGACAACAAGCTGCCCATGCTATTTCAGAG GCTGACAAAGATCATGATGGAAGACTAACTTTGGATGAGATGATTGAGAACCCGTATGCATTTTATGGCAGCGTCTTCCTTAGCGACGACGAAGACTATTTTCATGATGAATTCCGCT GAGGTGTCTGCAGATT GTTGGTGTTGCAAGTATGGTTTGC GGATCGATCCAA GATGCTTTCACCATCAGACT GAATGATCT AGGAGCTGCTAACCACA CAAAAAGAGAAC TTCAGCTGTTTGGTA CCCTAGAGTTCTTTCTATCAGGTACTCAGGTGGAGCACCAAGCT GGCTAATGCC AGCGATATTAGGTTACATACAT GCCAACTT GCCT GCCTTTATTTAGGGTGAGCCGCTAACCTGACCTGACATATGTTGTGTATTATCTCATCAGTTTTGTAAAATG CAATGGATGGAGTCTAGGAGAGCAATCATAGTAGAATGGACATGACCAGACCAGTGAGCTAAaaaaaaag ]
[+] EMBL BI801842 [ CAGAACGTTTATTATGCTAGACAACAAGCTGCCCATGCTATTTCAGAGCGCTGAC AAGATCATGATGGAAGACTAACTTTGGATGAGATGATTGAGAACCCGTATGCATTTTATGGCAGCGTCTTCCTTAGCGACGACGAAGACTATTTTCATGATGAATTCCGCT GAGGTGTCTGCAGATT GTTGGTGTTGCAAGTATGGTTTGC GGATCGATCCAA GATGCTTTCACCATCAGACT GAATGATCT AGGAGCTGCTAACCACACCTAAAAGAGAAC TTCAGCTGTTTGGTA CCCTAGAGTTCTTTCTATCAGGTACTCAGGTGGAGCACCAAGCTGGGCTAATGCCAAGCGATATTAGGTTACATACATGGCCAACTTCGCCTGGCCTTTATTTAGGCTGAGCCGCTAACCTGACCTGACATATGTTGTGTATTATCTCATCAGTTTTGTAAAATGCCAATGGATGGAGTCTAGGAGACCAATCATAGTAGAATGGACATGACCAGACC GTGAGCTAATTGTCCCTTTCTTCTTTCTTTTTTTCTGAAGTGTGAGCTAAATTATCCCTTCCTTGTTGAAAaaa ]
consensusID : consensus_8032#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 801 fasta sequence
[ACCCCCATCTCGCCGGCGATGCCGCCGCCGCCGTCGGCCACGGCGGGGCGGAGGTCCCCATTCTCCGCCCTCCTCCTCTACGTCACCTTCGCGCTCGTCATCCTGCTCCTCCTCACCTCCTACTCACCCAGCATCCCGCACCGGGGCCGCAGCCTCCACCGCCGCCTCAAGCTCCACCCCAGGAACCCCTCCCTCTCCGGGGCCGGCGCGGGGGCACCCACCGGAGGAAACGGGGCTCCGCAGAAGCAGCAGAACCACCACCACGCGGCGCCCTTCGACCCGGAGATCGCGGAGCTGGAGCGGCGGCTGGAGGACAAGGAGTGGGAGCGCGAGCACTACCGCATCCTGCACGGCGACGGCGGCGGAGGGGAGGCGGACGAGCACATGAGGGAATGGGAGGAGTTCCTCAGGGAGGACGAGGACTTCATCAACGACGACGAGCGGTTCAACCTCGGCGACCGCATCCGCGCGCTCTTCCCCAAGATCGACCTCGCCCCGCGCGACGGCTTCGCCTCCCTCGACGAGCTCACCAGGTGGAACCTCGAGCAGTCCAGAGCCGACCAGCTCCACCGCTCCGCTCGGGAGATGGAGCTCTACGACAAGAATGGCGACGGGGTTGTCTCCTACGGGGACTTCCGGGCTCAGCACAACGAATCGAGTGGAGAGGTTAATTCGCTGGGGTTCCCATGGTGGAAAGAGGAGCATTTCAATGCTTCGGATGCAGATGGCCATGGTTTCCTTAATAAACCGAGTTTAATGACTTCCTTAATCCCAGCGATTCAGAGAATCCCCAAATTATCA]
[+] EMBL CB641615 [ACCCCCATCTCGCCGGCGATGCCGCCGCCGCCGTCGGCCACGGCGGGGCGGAGGTCCCCATTCTCCGCCCTCCTCCTCTACGTCACCTTCGCGCTCGTCATCCTGCTCCTCCTCACCTCCTACTCACCCAGCATCCCGCACCGGGGCCGCAGCCTCCACCGCCGCCTCAAGCTCCACCCCAGGAACCCCTCCCTCTCCGGGGCCGGCGCGGGGGCACCCACCGGAGGAAACGGGGCTCCGCAGAAGCAGCAGAACCACCACCACGCGGCGCCCTTCGACCCGGAGATCGCGGAGCTGGAGCGGCGGCTGGAGGACAAGGAGTGGGAGCGCGAGCACTACCGCATCCTGCACGGCGACGGCGGCGGAGGGGAGGCGGACGAGCACATGAGGGAATGGGAGGAGTTCCTCAGGGAGGACGAGGACTTCATCAACGACGACGAGCGGTTCAACCTCGGCGACCGCATCCGCGCGCTCTTCCCCAAGATCGACCTCGCCCCGCGCGACGGCTTCGCCTCCCTCGACGAGCTCACCAGGTGGAACCTCGAGCAGTCCAGAGCCGACCAGCTCCACCGCTCCGCTCGGGAGATGGAGCTCTACGACAAGAATGGCGACGGGGTTGTCTCCTACGGGGACTTCCGGGCTCAGCACAACGAATCGAGTGGAGAGGTTAATTCGCTGGGGTTCCCATGGTGGAAAGAGGAGCATTTCAATGCTTCGGATGCAGATGGCCATGGTTTCCTTAATAAACCGAGTTTAATGACTTCCTTAATCCCAGCGATTCAGAGAATCCCCAAATTATCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8032#0 AACCCGCAACCCCACATCTCTCAGCCCCCGACCCCACTTCCGATCTCCACCCCCATCTCG 60
consensus_8032#1 ------------------------------------------------ACCCCCATCTCG 12
************
consensus_8032#0 CCGGCGATGCCGCCGCCGCCGTCGGCCACGGCGGGGCGGAGGTCCCCATTCTCCGCCCTC 120
consensus_8032#1 CCGGCGATGCCGCCGCCGCCGTCGGCCACGGCGGGGCGGAGGTCCCCATTCTCCGCCCTC 72
************************************************************
consensus_8032#0 CTCCTCTACGTCACCTTCGCGCTCGTCATCCTGCTCCTCCTCACCTCCTACTCACCCAGC 180
consensus_8032#1 CTCCTCTACGTCACCTTCGCGCTCGTCATCCTGCTCCTCCTCACCTCCTACTCACCCAGC 132
************************************************************
consensus_8032#0 ATCCCGCACCGGGGCCGCAGCCTCCACCGCCGCCTCAAGCTCCACCCCAGGAACCCCTCC 240
consensus_8032#1 ATCCCGCACCGGGGCCGCAGCCTCCACCGCCGCCTCAAGCTCCACCCCAGGAACCCCTCC 192
************************************************************
consensus_8032#0 CTCTCCGGGGCCGGCGCGGGGGCACCCACCGGAGGAAACGGGGCTCCGCAGAAGCAGCAG 300
consensus_8032#1 CTCTCCGGGGCCGGCGCGGGGGCACCCACCGGAGGAAACGGGGCTCCGCAGAAGCAGCAG 252
************************************************************
consensus_8032#0 AACCACCACCACGCGGCGCCCTTCGACCCGGAGATCGCGGAGCTGGAGCGGCGGCTGGAG 360
consensus_8032#1 AACCACCACCACGCGGCGCCCTTCGACCCGGAGATCGCGGAGCTGGAGCGGCGGCTGGAG 312
************************************************************
consensus_8032#0 GACAAGGAGTGGGAGCGCGAGCACTACCGCATCCTGCACGGCGACGGCGGCGGAGGGGAG 420
consensus_8032#1 GACAAGGAGTGGGAGCGCGAGCACTACCGCATCCTGCACGGCGACGGCGGCGGAGGGGAG 372
************************************************************
consensus_8032#0 GCGGACGAGCACATTTGGGTTCCGGGAGGAGTTCCTCAGGGAGGACGAGGACTTCATCAA 480
consensus_8032#1 GCGGACGAGCACATGAGGGAAT-GGGAGGAGTTCCTCAGGGAGGACGAGGACTTCATCAA 431
************** *** *************************************
consensus_8032#0 CGACGACGAGC------------------------------------------------- 491
consensus_8032#1 CGACGACGAGCGGTTCAACCTCGGCGACCGCATCCGCGCGCTCTTCCCCAAGATCGACCT 491
***********
consensus_8032#0 -----------------------------------TCACCAGGTGGAACCTCGAGCAGTC 516
consensus_8032#1 CGCCCCGCGCGACGGCTTCGCCTCCCTCGACGAGCTCACCAGGTGGAACCTCGAGCAGTC 551
*************************
consensus_8032#0 CAGAGCCGACCAGCTCCACCGCTCCGCTCGGGAGATGGAGCTCTACGACAAGAATGGCGA 576
consensus_8032#1 CAGAGCCGACCAGCTCCACCGCTCCGCTCGGGAGATGGAGCTCTACGACAAGAATGGCGA 611
************************************************************
consensus_8032#0 CGGGGTTGTCTCCTACGGGGACTTCCGGGCTCAGCACAACGAATCGAGTGGAGAGGTTAA 636
consensus_8032#1 CGGGGTTGTCTCCTACGGGGACTTCCGGGCTCAGCACAACGAATCGAGTGGAGAGGTTAA 671
************************************************************
consensus_8032#0 TTCGCTGGGGTTCCCATGGTGGAAAGAGGAGCATTTCAATGCTTCGGATGCAGATGGCCA 696
consensus_8032#1 TTCGCTGGGGTTCCCATGGTGGAAAGAGGAGCATTTCAATGCTTCGGATGCAGATGGCCA 731
************************************************************
consensus_8032#0 TGGTTTCCTTAATAAAACCGAGTTTAATGACTTCCTTAATCCCAGCGATTCAGAGAATCC 756
consensus_8032#1 TGGTTTCCTTAATAAA-CCGAGTTTAATGACTTCCTTAATCCCAGCGATTCAGAGAATCC 790
**************** *******************************************
consensus_8032#0 CCAAATTATCAATTTGCTCTGCAAACAAGAAATAAGACAGAGAGACAAGGATGGTGATGG 816
consensus_8032#1 CCAAATTATCA------------------------------------------------- 801
***********
consensus_8032#0 AAAGCTAAACTTTGAAGAATATTTTCATGGGCTACATGACCATATACATGGTTATGATTA 876
consensus_8032#1 ------------------------------------------------------------
consensus_8032#0 CGAGAACGCAGATATTTCCCATATTGGGAACAATACAGTAGCTAAGGAGCGGTTTTCCAA 936
consensus_8032#1 ------------------------------------------------------------
consensus_8032#0 ACTTGACAAAGACAGTGATGGGTTTATTTCAGAGCACGAACTAGAACCTGTTCTTGATAA 996
consensus_8032#1 ------------------------------------------------------------
consensus_8032#0 GCTCCATCTTTCAGAACGTTATTATGCTAGACAACAAGCTGCCCATGCTATTTCAGAGGC 1056
consensus_8032#1 ------------------------------------------------------------
consensus_8032#0 TGACAAAGATCATGATGGAAGACTAACTTTGGATGAGATGATTGAGAACCCGTATGCATT 1116
consensus_8032#1 ------------------------------------------------------------
consensus_8032#0 TTATGGCAGCGTCTTCCTTAGCGACGACGAAGACTATTTTCATGATGAATTCCGCTGAGG 1176
consensus_8032#1 ------------------------------------------------------------
consensus_8032#0 TGTCTGCAGATTGTTGGTGTTGCAAGTATGGTTTGCGGATCGATCCAAGATGCTTTCACC 1236
consensus_8032#1 ------------------------------------------------------------
consensus_8032#0 ATCAGACTGAATGATCTAGGAGCTGCTAACCACACAAAAAGAGAACTTCAGCTGTTTGGT 1296
consensus_8032#1 ------------------------------------------------------------
consensus_8032#0 ACCCTAGAGTTCTTTCTATCAGGTACTCAGGTGGAGCACCAAGCTGGCTAATGCCAGCGA 1356
consensus_8032#1 ------------------------------------------------------------
consensus_8032#0 TATTAGGTTACATACATGCCAACTTGCCTGCCTTTATTTAGGGTGAGCCGCTAACCTGAC 1416
consensus_8032#1 ------------------------------------------------------------
consensus_8032#0 CTGACATATGTTGTGTATTATCTCATCAGTTTTGTAAAATGCAATGGATGGAGTCTAGGA 1476
consensus_8032#1 ------------------------------------------------------------
consensus_8032#0 GAGCAATCATAGTAGAATGGACATGACCAGACCAGTGAGCTAATTGTGCCTTTCTTCTTT 1536
consensus_8032#1 ------------------------------------------------------------
consensus_8032#0 CTTTTTTTCTGAAGTGTGAGCTAAATTATGCCTTCCTTGTTGAAACATAATGACTGGATT 1596
consensus_8032#1 ------------------------------------------------------------
consensus_8032#0 GCTGATGGCGCTCCGACCGACAGTTTTCCTCGGCGCATGAGTGCGTCGTGGACGTGGAAT 1656
consensus_8032#1 ------------------------------------------------------------
consensus_8032#0 GATGGAATTATTGTAGTTGCGTCGATCACATGGAAATGCATTATTCGGGA 1706
consensus_8032#1 --------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||