These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8036#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1305 fasta sequence [TAGCTCCTNTNACTTCGCCACCACAGTGTTCTCATCTCCCTTTCATATCCCCTGCTTCCTCTCCGTCCATGGAGGAGGTGGCAGTAGCAGCTGGCATCCTCCTCCTCTNATCTCCTCCTCGGTCACTTCAGTGCTTACTTGCCGGTNATGAGGAGGTCTTCTNAGGGGAAGAGCTCCAGCGTCGGCGGCGTTGGCGNCGTACGNAGGTATGACGTGCACGGTGGTGGTAACTTTCTGGNCTGCTACGCGAAGGCGG-GGAGGCCGAGGCCGTCCAAGTGGGACGACGCGCAGAAGTGGCTCTCCCGGGCGGGCGACGACGACTGCGGCGGCGAAGCTACCCGGCGGAGGAGCTCCTGCGCCAGCGCCGACGACGGGCTGCTGCTGCCTCCTCCGCCGGCGGCGCGGAAGGGGGCCGGCGGCTGGCGATCGTGGAGCAACGTGGAATGGGAGGGCGCGCCCGCGGCGATGGCGCCGGCGCTGAAGGCCGCGCGCGGCGACGAGGGGGTGGACACCAAGGTGGTGGACGCCGTGCAGGCGTACGTGCCGCAGCGGTGCGTGGTGTCGCTGAGGGACGTCGGCACGGAGATGACGCCCGGCGGGAGCAAGGAGCCGTCGAGGGCGAACACTCCCCGCGTCGTCGCGCCGGCGGCGACCGCCCGTGTCGTCGCGCGGGGCACGGCTTCGCCTGGGCAATGCGACGGCGGGTCGCGTGACAGCGCCGTCGCCGGCGGCGTGGTGGATCTCCGGGCGGCTCGCAAGCGCGCCGATCAGGGGCACGACGAAGTCGCGGGCACGATCACGGCCGTGTCGCCCGCGACGGCGTGGGGCGACGCGGAGCGCGCCAAGTACATGGCCAGGTACAGGCGCGAGGAGATGAGAATCCAGGCGTGGGAGAACCGGGAGCGGCGGAAGGCGGAGCTGCAGATGCGGACGGCGGAGGAGAAGGCCGAGCGGATGAGGCTGCGCGCGCAGGCGAGGACGGCGGGGAAGCTGGCGACGGCGCAGGCGGAGGCCA-AGGCGCGGCGCGCGCGCGCCGAGGCCGAGCTGGCGCTGGGCCGCCCGGGAGGCGGTGCCAAGGGTTGGCTGCT-CACGCGGAGCGCGAGCTGGAGCAGCGGCAGCGGCCGCTCGCCCTCCTCTCTCTCGCTCCGGTTGCCGCTGCTGTGCCGCTGAGAAAAATCCACTGCCACAGTCAAAAGGCTCGTGATCGATCTGAGAGTTTCCGCTGCTTGTTGAAGGCGGTTTCTGATGTACTACTAGTACCAGGCACAGAAGAATTTTATCTTTGTACCATCAATGAAGACCCGT] [+] EMBL C26933 [TAGCTCCTNTNACTTCGCCACCACAGTGTTCTCATCTCCCTTTCATATCCCCTGCTTCCTCTCCGTCCATGGAGGAGGTGGCAGTAGCAGCTGGCATCCTCCTCCTCTNATCTCCTCCTCGGTCACTTCAGTGCTTACTTGCCGGTNATGAGGAGGTCTTCTNAGGGGAAGAGCTCCAGCGTCGGCGGCGTTGGCGNCGTACGNAGGTATGACGTGCACGGTGGTGGTAACTTTCTGGNCTGCTACGCGAAGGCGGNGGAGGCCGA ] [+] EMBL AK103400 [ AGTAGCAGCTGGCATCCTCCTCCTCTGATCTCCTCCTCGGTCACTTCAGTGCTTACTTGCCGGTGATGAGGAGGTCTTCTCAGGGGAAGAGCTCCAGCGGCGGCGGCGTTGGCGGCGTACGGAGGTATGACGTGCACGGTGGTGGTAACTTGCTGGCCTGCTACGCGAAGGCGG CGAGGCCGAGGCCGTCCAAGTGGGACGACGCGCAGAAGTGGCTCTCCCGGGCGGGCGACGACGACTGCGGCGGCGAAGCTACCCGGCGGAGGAGCTCCTGCGCCAGCGCCGACGACGGGCTGCTGCTGCCTCCTCCGCCGGCGGCGCGGAAGGGGGCCGGCGGCTGGCGATCGTGGAGCAACGTGGAATGGGAGGGCGCGCCCGCGGCGATGGCGCCGGCGCTGAAGGCCGCGCGCGGCGACGAGGGGGTGGACACCAAGGTGGTGGACGCCGTGCAGGCGTACGTGCCGCAGCGGTGCGTGGTGTCGCTGAGGGACGTCGGCACGGAGATGACGCCCGGCGGGAGCAAGGAGCCGTCGAGGGCGAACACTCCCCGCGTCGTCGCGCCGGCGGCGACCGCCCGTGTCGTCGCGCGGGGCACGGCTTCGCCTGGGCAATGCGACGGCGGGTCGCGTGACAGCGCCGTCGCCGGCGGCGTGGTGGATCTCCGGGCGGCTCGCAAGCGCGCCGATCAGGGGCACGACGAAGTCGCGGGCACGATCACGGCCGTGTCGCCCGCGACGGCGTGGGGCGACGCGGAGCGCGCCAAGTACATGGCCAGGTACAGGCGCGAGGAGATGAGAATCCAGGCGTGGGAGAACCGGGAGCGGCGGAAGGCGGAGCTGCAGATGCGGACGGCGGAGGAGAAGGCCGAGCGGATGAGGCTGCGCGCGCAGGCGAGGACGGCGGGGAAGCTGGCGACGGCGCAGGCGGAGGCCA AGGCGCGGCGCGCGCGCGCCGAGGCCGAGCTGGCGCTGGGCCGCCCGGGAGGCGGTGCCAAGGGTTGGCTGCT CACGCGGAGCGCGAGCTGGAGCAGCGGCAGCGGCCGCTCGCCCTCCTCTCTCTCGCTCCGGTTGCCGCTGCTGTGCCGCTGAGAAAAATCCACTGCCACAGTCAAAAGGCTCGTGATCGATCTGAGAGTTTCCGCTGCTTGTTGAAGGCGGTTTCTGATGTACTACTAGTACCAGGCACAGAAGAATTTTATCTTTGTACCATCAATGAAGACCCGT] [+] EMBL AU164520 [ GGCGTACGTGCCGCAGCGGTGCGTGGTGTCGCTGAGGGACGTCGGCACGGAGATGACGCCCGGCGGGAGCAAGGAGCCGTCGAGGGCGAACACTCCCCGCGTCGTCGCGCCGGCGGCGACCGCCCGTGTCGTCGCGCGGGGCACGGCTTCGCCTGGGCAATGCGACGGCGGGTCGCGTGACAGCGCCGTCGCCGGCGGCGTGGTGGATCTCCGGGCGGCTCGCAAGCGCGCCGATCAGGGGCACGACGAAGTCGCGGGCACGATCACGGCCGTGTCGCCCGCGACGGCGTGGGGCGACGCGGAGCGCGCCAAGTACATGGCCAGGTACAGGCGCGAGGAGATGAGAATCCAGGCGTGGGAGAACCGGGAGCGGCGGAAGGCGGAGCTGCAGATGCGGACGGCGGAGGAGAAGGCCGAGCGGATGAGGCTGCGCGCGCAGGCGAGGACGGCGGGGAAGCTGGCGACGGCGCAGGCGGAGGCCA AGGCGCGGCGCGCGCGCGCCGAGGCCGAG ] [+] EMBL C97012 [ GCCAGGTACAGGCGCGAGGAGATGAGAATCCAGGNGTGGGAGAACCGGGAGCGGCGGAAGGCGGAGCTGCAGATGCGGACGGCGGAGGAGAAGGCCGAGCGGATGAAGNTGCGCGCGCAGGCGAGGACGGCGGGGAAGCTGGCGACGGCGCAGGCGGAGGCCANAGGCGC GCGCGCGCGCGCCGAGGCCGA NTGGCGCTGGGCCGCCCGGGAGGCGGTGCCAAGGGTTGGCTGCTACACGCGGAGCGCGAGCTGGA ] consensusID : consensus_8036#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 583 fasta sequence [CCACGGTCCGCGCCGTGCAGGCGTACGTNCGCAGCGGTGCGTGGGTCGCTNAGGACGTCGGCACGAAGATGACGCCCGCCGGAGCAAGAACCGTCGAGGCGAACACTCCCCGCGTCGTCGCGCCGCCGGCGACCGCCCGTGTCGTCGCGCGGGGCACGGCTTCGCCTGGCAATGCGACGGCGGGTCGCGTGACAGCGCCGTCGCCGNCGGCGTGGTGATCTCCGGCGGCTCGCAAGCGCGCCGATCAGGGGCACGACGAAGTCGCGGGCACGATCACGGCCGTGTCGCCCGCGACGGCGTGGGCGACGCGGAGCGCGCCAAGTACATGGCCAGGTACAGGCGCGAGGAGATGAGAATCCAGGCGTGGGAGAACCGGGAGCGGCGGAAGGCGGAGCTGCAGATGCGGACGGCGGAGGAGAAGGCCGAGCGGATGAGGCTGCGCGCGCAGGCGAGGACGGCGGGGAAGCTGGCGACGGCGCAGGCGGAGGCCAAGGCGCGGCGCGCGCGCGCCGAGGCCGAGCTGGCGCTGGGCCGCCCGGGAGGCGGTGCCAAGGGTTGGCTGCTCACGCGGAGCGCGAGCTGG] [+] EMBL AU164521 [CCACGGTCCGCGCCGTGCAGGCGTACGTNCGCAGCGGTGCGTGGGTCGCTNAGGACGTCGGCACGAAGATGACGCCCGCCGGAGCAAGAACCGTCGAGGCGAACACTCCCCGCGTCGTCGCGCCGCCGGCGACCGCCCGTGTCGTCGCGCGGGGCACGGCTTCGCCTGGCAATGCGACGGCGGGTCGCGTGACAGCGCCGTCGCCGNCGGCGTGGTGATCTCCGGCGGCTCGCAAGCGCGCCGATCAGGGGCACGACGAAGTCGCGGGCACGATCACGGCCGTGTCGCCCGCGACGGCGTGGGCGACGCGGAGCGCGCCAAGTACATGGCCAGGTACAGGCGCGAGGAGATGAGAATCCAGGCGTGGGAGAACCGGGAGCGGCGGAAGGCGGAGCTGCAGATGCGGACGGCGGAGGAGAAGGCCGAGCGGATGAGGCTGCGCGCGCAGGCGAGGACGGCGGGGAAGCTGGCGACGGCGCAGGCGGAGGCCAAGGCGCGGCGCGCGCGCGCCGAGGCCGAGCTGGCGCTGGGCCGCCCGGGAGGCGGTGCCAAGGGTTGGCTGCTCACGCGGAGCGCGAGCTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8036#0 TAGCTCCTNTNACTTCGCCACCACAGTGTTCTCATCTCCCTTTCATATCCCCTGCTTCCT 60 consensus_8036#1 ------------------------------------------------------------ consensus_8036#0 CTCCGTCCATGGAGGAGGTGGCAGTAGCAGCTGGCATCCTCCTCCTCTNATCTCCTCCTC 120 consensus_8036#1 ------------------------------------------------------------ consensus_8036#0 GGTCACTTCAGTGCTTACTTGCCGGTNATGAGGAGGTCTTCTNAGGGGAAGAGCTCCAGC 180 consensus_8036#1 ------------------------------------------------------------ consensus_8036#0 GTCGGCGGCGTTGGCGNCGTACGNAGGTATGACGTGCACGGTGGTGGTAACTTTCTGGNC 240 consensus_8036#1 ------------------------------------------------------------ consensus_8036#0 TGCTACGCGAAGGCGGGGAGGCCGAGGCCGTCCAAGTGGGACGACGCGCAGAAGTGGCTC 300 consensus_8036#1 ------------------------------------------------------------ consensus_8036#0 TCCCGGGCGGGCGACGACGACTGCGGCGGCGAAGCTACCCGGCGGAGGAGCTCCTGCGCC 360 consensus_8036#1 ------------------------------------------------------------ consensus_8036#0 AGCGCCGACGACGGGCTGCTGCTGCCTCCTCCGCCGGCGGCGCGGAAGGGGGCCGGCGGC 420 consensus_8036#1 ------------------------------------------------------------ consensus_8036#0 TGGCGATCGTGGAGCAACGTGGAATGGGAGGGCGCGCCCGCGGCGATGGCGCCGGCGCTG 480 consensus_8036#1 ------------------------------------------------------------ consensus_8036#0 AAGGCCGCGCGCGGCGACGAGGGGGTGGACACCAAGGTGGTGGACGCCGTGCAGGCGTAC 540 consensus_8036#1 ----------------------------------CCACGGTCCGCGCCGTGCAGGCGTAC 26 *** **************** consensus_8036#0 GTGCCGCAGCGGTGCGTGGTGTCGCTGAGGGACGTCGGCACGGAGATGACGCCCGGCGGG 600 consensus_8036#1 GTNC-GCAGCGGTGCGTGG-GTCGCTNAGG-ACGTCGGCACGAAGATGACGCCCGCCGG- 82 ** * ************** ****** *** *********** ************ *** consensus_8036#0 AGCAAGGAGCCGTCGAGGGCGAACACTCCCCGCGTCGTCGCGCCGGCGGCGACCGCCCGT 660 consensus_8036#1 AGCAAGAA-CCGTCGAGG-CGAACACTCCCCGCGTCGTCGCGCCGCCGGCGACCGCCCGT 140 ****** * ********* ************************** ************** consensus_8036#0 GTCGTCGCGCGGGGCACGGCTTCGCCTGGGCAATGCGACGGCGGGTCGCGTGACAGCGCC 720 consensus_8036#1 GTCGTCGCGCGGGGCACGGCTTCGCCTGG-CAATGCGACGGCGGGTCGCGTGACAGCGCC 199 ***************************** ****************************** consensus_8036#0 GTCGCCGGCGGCGTGGTGGATCTCCGGGCGGCTCGCAAGCGCGCCGATCAGGGGCACGAC 780 consensus_8036#1 GTCGCCGNCGGCGTGGTG-ATCTCCGG-CGGCTCGCAAGCGCGCCGATCAGGGGCACGAC 257 ******* ********** ******** ******************************** consensus_8036#0 GAAGTCGCGGGCACGATCACGGCCGTGTCGCCCGCGACGGCGTGGGGCGACGCGGAGCGC 840 consensus_8036#1 GAAGTCGCGGGCACGATCACGGCCGTGTCGCCCGCGACGGCGTGGG-CGACGCGGAGCGC 316 ********************************************** ************* consensus_8036#0 GCCAAGTACATGGCCAGGTACAGGCGCGAGGAGATGAGAATCCAGGCGTGGGAGAACCGG 900 consensus_8036#1 GCCAAGTACATGGCCAGGTACAGGCGCGAGGAGATGAGAATCCAGGCGTGGGAGAACCGG 376 ************************************************************ consensus_8036#0 GAGCGGCGGAAGGCGGAGCTGCAGATGCGGACGGCGGAGGAGAAGGCCGAGCGGATGAGG 960 consensus_8036#1 GAGCGGCGGAAGGCGGAGCTGCAGATGCGGACGGCGGAGGAGAAGGCCGAGCGGATGAGG 436 ************************************************************ consensus_8036#0 CTGCGCGCGCAGGCGAGGACGGCGGGGAAGCTGGCGACGGCGCAGGCGGAGGCCAAGGCG 1020 consensus_8036#1 CTGCGCGCGCAGGCGAGGACGGCGGGGAAGCTGGCGACGGCGCAGGCGGAGGCCAAGGCG 496 ************************************************************ consensus_8036#0 CGGCGCGCGCGCGCCGAGGCCGAGCTGGCGCTGGGCCGCCCGGGAGGCGGTGCCAAGGGT 1080 consensus_8036#1 CGGCGCGCGCGCGCCGAGGCCGAGCTGGCGCTGGGCCGCCCGGGAGGCGGTGCCAAGGGT 556 ************************************************************ consensus_8036#0 TGGCTGCTCACGCGGAGCGCGAGCTGGAGCAGCGGCAGCGGCCGCTCGCCCTCCTCTCTC 1140 consensus_8036#1 TGGCTGCTCACGCGGAGCGCGAGCTGG--------------------------------- 583 *************************** consensus_8036#0 TCGCTCCGGTTGCCGCTGCTGTGCCGCTGAGAAAAATCCACTGCCACAGTCAAAAGGCTC 1200 consensus_8036#1 ------------------------------------------------------------ consensus_8036#0 GTGATCGATCTGAGAGTTTCCGCTGCTTGTTGAAGGCGGTTTCTGATGTACTACTAGTAC 1260 consensus_8036#1 ------------------------------------------------------------ consensus_8036#0 CAGGCACAGAAGAATTTTATCTTTGTACCATCAATGAAGACCCGT 1305 consensus_8036#1 --------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||