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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8036#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1305 fasta sequence
[TAGCTCCTNTNACTTCGCCACCACAGTGTTCTCATCTCCCTTTCATATCCCCTGCTTCCTCTCCGTCCATGGAGGAGGTGGCAGTAGCAGCTGGCATCCTCCTCCTCTNATCTCCTCCTCGGTCACTTCAGTGCTTACTTGCCGGTNATGAGGAGGTCTTCTNAGGGGAAGAGCTCCAGCGTCGGCGGCGTTGGCGNCGTACGNAGGTATGACGTGCACGGTGGTGGTAACTTTCTGGNCTGCTACGCGAAGGCGG-GGAGGCCGAGGCCGTCCAAGTGGGACGACGCGCAGAAGTGGCTCTCCCGGGCGGGCGACGACGACTGCGGCGGCGAAGCTACCCGGCGGAGGAGCTCCTGCGCCAGCGCCGACGACGGGCTGCTGCTGCCTCCTCCGCCGGCGGCGCGGAAGGGGGCCGGCGGCTGGCGATCGTGGAGCAACGTGGAATGGGAGGGCGCGCCCGCGGCGATGGCGCCGGCGCTGAAGGCCGCGCGCGGCGACGAGGGGGTGGACACCAAGGTGGTGGACGCCGTGCAGGCGTACGTGCCGCAGCGGTGCGTGGTGTCGCTGAGGGACGTCGGCACGGAGATGACGCCCGGCGGGAGCAAGGAGCCGTCGAGGGCGAACACTCCCCGCGTCGTCGCGCCGGCGGCGACCGCCCGTGTCGTCGCGCGGGGCACGGCTTCGCCTGGGCAATGCGACGGCGGGTCGCGTGACAGCGCCGTCGCCGGCGGCGTGGTGGATCTCCGGGCGGCTCGCAAGCGCGCCGATCAGGGGCACGACGAAGTCGCGGGCACGATCACGGCCGTGTCGCCCGCGACGGCGTGGGGCGACGCGGAGCGCGCCAAGTACATGGCCAGGTACAGGCGCGAGGAGATGAGAATCCAGGCGTGGGAGAACCGGGAGCGGCGGAAGGCGGAGCTGCAGATGCGGACGGCGGAGGAGAAGGCCGAGCGGATGAGGCTGCGCGCGCAGGCGAGGACGGCGGGGAAGCTGGCGACGGCGCAGGCGGAGGCCA-AGGCGCGGCGCGCGCGCGCCGAGGCCGAGCTGGCGCTGGGCCGCCCGGGAGGCGGTGCCAAGGGTTGGCTGCT-CACGCGGAGCGCGAGCTGGAGCAGCGGCAGCGGCCGCTCGCCCTCCTCTCTCTCGCTCCGGTTGCCGCTGCTGTGCCGCTGAGAAAAATCCACTGCCACAGTCAAAAGGCTCGTGATCGATCTGAGAGTTTCCGCTGCTTGTTGAAGGCGGTTTCTGATGTACTACTAGTACCAGGCACAGAAGAATTTTATCTTTGTACCATCAATGAAGACCCGT]
[+] EMBL C26933 [TAGCTCCTNTNACTTCGCCACCACAGTGTTCTCATCTCCCTTTCATATCCCCTGCTTCCTCTCCGTCCATGGAGGAGGTGGCAGTAGCAGCTGGCATCCTCCTCCTCTNATCTCCTCCTCGGTCACTTCAGTGCTTACTTGCCGGTNATGAGGAGGTCTTCTNAGGGGAAGAGCTCCAGCGTCGGCGGCGTTGGCGNCGTACGNAGGTATGACGTGCACGGTGGTGGTAACTTTCTGGNCTGCTACGCGAAGGCGGNGGAGGCCGA ]
[+] EMBL AK103400 [ AGTAGCAGCTGGCATCCTCCTCCTCTGATCTCCTCCTCGGTCACTTCAGTGCTTACTTGCCGGTGATGAGGAGGTCTTCTCAGGGGAAGAGCTCCAGCGGCGGCGGCGTTGGCGGCGTACGGAGGTATGACGTGCACGGTGGTGGTAACTTGCTGGCCTGCTACGCGAAGGCGG CGAGGCCGAGGCCGTCCAAGTGGGACGACGCGCAGAAGTGGCTCTCCCGGGCGGGCGACGACGACTGCGGCGGCGAAGCTACCCGGCGGAGGAGCTCCTGCGCCAGCGCCGACGACGGGCTGCTGCTGCCTCCTCCGCCGGCGGCGCGGAAGGGGGCCGGCGGCTGGCGATCGTGGAGCAACGTGGAATGGGAGGGCGCGCCCGCGGCGATGGCGCCGGCGCTGAAGGCCGCGCGCGGCGACGAGGGGGTGGACACCAAGGTGGTGGACGCCGTGCAGGCGTACGTGCCGCAGCGGTGCGTGGTGTCGCTGAGGGACGTCGGCACGGAGATGACGCCCGGCGGGAGCAAGGAGCCGTCGAGGGCGAACACTCCCCGCGTCGTCGCGCCGGCGGCGACCGCCCGTGTCGTCGCGCGGGGCACGGCTTCGCCTGGGCAATGCGACGGCGGGTCGCGTGACAGCGCCGTCGCCGGCGGCGTGGTGGATCTCCGGGCGGCTCGCAAGCGCGCCGATCAGGGGCACGACGAAGTCGCGGGCACGATCACGGCCGTGTCGCCCGCGACGGCGTGGGGCGACGCGGAGCGCGCCAAGTACATGGCCAGGTACAGGCGCGAGGAGATGAGAATCCAGGCGTGGGAGAACCGGGAGCGGCGGAAGGCGGAGCTGCAGATGCGGACGGCGGAGGAGAAGGCCGAGCGGATGAGGCTGCGCGCGCAGGCGAGGACGGCGGGGAAGCTGGCGACGGCGCAGGCGGAGGCCA AGGCGCGGCGCGCGCGCGCCGAGGCCGAGCTGGCGCTGGGCCGCCCGGGAGGCGGTGCCAAGGGTTGGCTGCT CACGCGGAGCGCGAGCTGGAGCAGCGGCAGCGGCCGCTCGCCCTCCTCTCTCTCGCTCCGGTTGCCGCTGCTGTGCCGCTGAGAAAAATCCACTGCCACAGTCAAAAGGCTCGTGATCGATCTGAGAGTTTCCGCTGCTTGTTGAAGGCGGTTTCTGATGTACTACTAGTACCAGGCACAGAAGAATTTTATCTTTGTACCATCAATGAAGACCCGT]
[+] EMBL AU164520 [ GGCGTACGTGCCGCAGCGGTGCGTGGTGTCGCTGAGGGACGTCGGCACGGAGATGACGCCCGGCGGGAGCAAGGAGCCGTCGAGGGCGAACACTCCCCGCGTCGTCGCGCCGGCGGCGACCGCCCGTGTCGTCGCGCGGGGCACGGCTTCGCCTGGGCAATGCGACGGCGGGTCGCGTGACAGCGCCGTCGCCGGCGGCGTGGTGGATCTCCGGGCGGCTCGCAAGCGCGCCGATCAGGGGCACGACGAAGTCGCGGGCACGATCACGGCCGTGTCGCCCGCGACGGCGTGGGGCGACGCGGAGCGCGCCAAGTACATGGCCAGGTACAGGCGCGAGGAGATGAGAATCCAGGCGTGGGAGAACCGGGAGCGGCGGAAGGCGGAGCTGCAGATGCGGACGGCGGAGGAGAAGGCCGAGCGGATGAGGCTGCGCGCGCAGGCGAGGACGGCGGGGAAGCTGGCGACGGCGCAGGCGGAGGCCA AGGCGCGGCGCGCGCGCGCCGAGGCCGAG ]
[+] EMBL C97012 [ GCCAGGTACAGGCGCGAGGAGATGAGAATCCAGGNGTGGGAGAACCGGGAGCGGCGGAAGGCGGAGCTGCAGATGCGGACGGCGGAGGAGAAGGCCGAGCGGATGAAGNTGCGCGCGCAGGCGAGGACGGCGGGGAAGCTGGCGACGGCGCAGGCGGAGGCCANAGGCGC GCGCGCGCGCGCCGAGGCCGA NTGGCGCTGGGCCGCCCGGGAGGCGGTGCCAAGGGTTGGCTGCTACACGCGGAGCGCGAGCTGGA ]
consensusID : consensus_8036#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 583 fasta sequence
[CCACGGTCCGCGCCGTGCAGGCGTACGTNCGCAGCGGTGCGTGGGTCGCTNAGGACGTCGGCACGAAGATGACGCCCGCCGGAGCAAGAACCGTCGAGGCGAACACTCCCCGCGTCGTCGCGCCGCCGGCGACCGCCCGTGTCGTCGCGCGGGGCACGGCTTCGCCTGGCAATGCGACGGCGGGTCGCGTGACAGCGCCGTCGCCGNCGGCGTGGTGATCTCCGGCGGCTCGCAAGCGCGCCGATCAGGGGCACGACGAAGTCGCGGGCACGATCACGGCCGTGTCGCCCGCGACGGCGTGGGCGACGCGGAGCGCGCCAAGTACATGGCCAGGTACAGGCGCGAGGAGATGAGAATCCAGGCGTGGGAGAACCGGGAGCGGCGGAAGGCGGAGCTGCAGATGCGGACGGCGGAGGAGAAGGCCGAGCGGATGAGGCTGCGCGCGCAGGCGAGGACGGCGGGGAAGCTGGCGACGGCGCAGGCGGAGGCCAAGGCGCGGCGCGCGCGCGCCGAGGCCGAGCTGGCGCTGGGCCGCCCGGGAGGCGGTGCCAAGGGTTGGCTGCTCACGCGGAGCGCGAGCTGG]
[+] EMBL AU164521 [CCACGGTCCGCGCCGTGCAGGCGTACGTNCGCAGCGGTGCGTGGGTCGCTNAGGACGTCGGCACGAAGATGACGCCCGCCGGAGCAAGAACCGTCGAGGCGAACACTCCCCGCGTCGTCGCGCCGCCGGCGACCGCCCGTGTCGTCGCGCGGGGCACGGCTTCGCCTGGCAATGCGACGGCGGGTCGCGTGACAGCGCCGTCGCCGNCGGCGTGGTGATCTCCGGCGGCTCGCAAGCGCGCCGATCAGGGGCACGACGAAGTCGCGGGCACGATCACGGCCGTGTCGCCCGCGACGGCGTGGGCGACGCGGAGCGCGCCAAGTACATGGCCAGGTACAGGCGCGAGGAGATGAGAATCCAGGCGTGGGAGAACCGGGAGCGGCGGAAGGCGGAGCTGCAGATGCGGACGGCGGAGGAGAAGGCCGAGCGGATGAGGCTGCGCGCGCAGGCGAGGACGGCGGGGAAGCTGGCGACGGCGCAGGCGGAGGCCAAGGCGCGGCGCGCGCGCGCCGAGGCCGAGCTGGCGCTGGGCCGCCCGGGAGGCGGTGCCAAGGGTTGGCTGCTCACGCGGAGCGCGAGCTGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8036#0 TAGCTCCTNTNACTTCGCCACCACAGTGTTCTCATCTCCCTTTCATATCCCCTGCTTCCT 60
consensus_8036#1 ------------------------------------------------------------
consensus_8036#0 CTCCGTCCATGGAGGAGGTGGCAGTAGCAGCTGGCATCCTCCTCCTCTNATCTCCTCCTC 120
consensus_8036#1 ------------------------------------------------------------
consensus_8036#0 GGTCACTTCAGTGCTTACTTGCCGGTNATGAGGAGGTCTTCTNAGGGGAAGAGCTCCAGC 180
consensus_8036#1 ------------------------------------------------------------
consensus_8036#0 GTCGGCGGCGTTGGCGNCGTACGNAGGTATGACGTGCACGGTGGTGGTAACTTTCTGGNC 240
consensus_8036#1 ------------------------------------------------------------
consensus_8036#0 TGCTACGCGAAGGCGGGGAGGCCGAGGCCGTCCAAGTGGGACGACGCGCAGAAGTGGCTC 300
consensus_8036#1 ------------------------------------------------------------
consensus_8036#0 TCCCGGGCGGGCGACGACGACTGCGGCGGCGAAGCTACCCGGCGGAGGAGCTCCTGCGCC 360
consensus_8036#1 ------------------------------------------------------------
consensus_8036#0 AGCGCCGACGACGGGCTGCTGCTGCCTCCTCCGCCGGCGGCGCGGAAGGGGGCCGGCGGC 420
consensus_8036#1 ------------------------------------------------------------
consensus_8036#0 TGGCGATCGTGGAGCAACGTGGAATGGGAGGGCGCGCCCGCGGCGATGGCGCCGGCGCTG 480
consensus_8036#1 ------------------------------------------------------------
consensus_8036#0 AAGGCCGCGCGCGGCGACGAGGGGGTGGACACCAAGGTGGTGGACGCCGTGCAGGCGTAC 540
consensus_8036#1 ----------------------------------CCACGGTCCGCGCCGTGCAGGCGTAC 26
*** ****************
consensus_8036#0 GTGCCGCAGCGGTGCGTGGTGTCGCTGAGGGACGTCGGCACGGAGATGACGCCCGGCGGG 600
consensus_8036#1 GTNC-GCAGCGGTGCGTGG-GTCGCTNAGG-ACGTCGGCACGAAGATGACGCCCGCCGG- 82
** * ************** ****** *** *********** ************ ***
consensus_8036#0 AGCAAGGAGCCGTCGAGGGCGAACACTCCCCGCGTCGTCGCGCCGGCGGCGACCGCCCGT 660
consensus_8036#1 AGCAAGAA-CCGTCGAGG-CGAACACTCCCCGCGTCGTCGCGCCGCCGGCGACCGCCCGT 140
****** * ********* ************************** **************
consensus_8036#0 GTCGTCGCGCGGGGCACGGCTTCGCCTGGGCAATGCGACGGCGGGTCGCGTGACAGCGCC 720
consensus_8036#1 GTCGTCGCGCGGGGCACGGCTTCGCCTGG-CAATGCGACGGCGGGTCGCGTGACAGCGCC 199
***************************** ******************************
consensus_8036#0 GTCGCCGGCGGCGTGGTGGATCTCCGGGCGGCTCGCAAGCGCGCCGATCAGGGGCACGAC 780
consensus_8036#1 GTCGCCGNCGGCGTGGTG-ATCTCCGG-CGGCTCGCAAGCGCGCCGATCAGGGGCACGAC 257
******* ********** ******** ********************************
consensus_8036#0 GAAGTCGCGGGCACGATCACGGCCGTGTCGCCCGCGACGGCGTGGGGCGACGCGGAGCGC 840
consensus_8036#1 GAAGTCGCGGGCACGATCACGGCCGTGTCGCCCGCGACGGCGTGGG-CGACGCGGAGCGC 316
********************************************** *************
consensus_8036#0 GCCAAGTACATGGCCAGGTACAGGCGCGAGGAGATGAGAATCCAGGCGTGGGAGAACCGG 900
consensus_8036#1 GCCAAGTACATGGCCAGGTACAGGCGCGAGGAGATGAGAATCCAGGCGTGGGAGAACCGG 376
************************************************************
consensus_8036#0 GAGCGGCGGAAGGCGGAGCTGCAGATGCGGACGGCGGAGGAGAAGGCCGAGCGGATGAGG 960
consensus_8036#1 GAGCGGCGGAAGGCGGAGCTGCAGATGCGGACGGCGGAGGAGAAGGCCGAGCGGATGAGG 436
************************************************************
consensus_8036#0 CTGCGCGCGCAGGCGAGGACGGCGGGGAAGCTGGCGACGGCGCAGGCGGAGGCCAAGGCG 1020
consensus_8036#1 CTGCGCGCGCAGGCGAGGACGGCGGGGAAGCTGGCGACGGCGCAGGCGGAGGCCAAGGCG 496
************************************************************
consensus_8036#0 CGGCGCGCGCGCGCCGAGGCCGAGCTGGCGCTGGGCCGCCCGGGAGGCGGTGCCAAGGGT 1080
consensus_8036#1 CGGCGCGCGCGCGCCGAGGCCGAGCTGGCGCTGGGCCGCCCGGGAGGCGGTGCCAAGGGT 556
************************************************************
consensus_8036#0 TGGCTGCTCACGCGGAGCGCGAGCTGGAGCAGCGGCAGCGGCCGCTCGCCCTCCTCTCTC 1140
consensus_8036#1 TGGCTGCTCACGCGGAGCGCGAGCTGG--------------------------------- 583
***************************
consensus_8036#0 TCGCTCCGGTTGCCGCTGCTGTGCCGCTGAGAAAAATCCACTGCCACAGTCAAAAGGCTC 1200
consensus_8036#1 ------------------------------------------------------------
consensus_8036#0 GTGATCGATCTGAGAGTTTCCGCTGCTTGTTGAAGGCGGTTTCTGATGTACTACTAGTAC 1260
consensus_8036#1 ------------------------------------------------------------
consensus_8036#0 CAGGCACAGAAGAATTTTATCTTTGTACCATCAATGAAGACCCGT 1305
consensus_8036#1 ---------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||