Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 8045 cluster # 8045       Sequences # 5       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8045#0 length = 1573 sequences # 5  

consensusID : consensus_8045#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1573
fasta sequence
                              [CATCTCCCATCCACCATTGCTGCCATCTCCACCACATACAATACAACAACTACTACTCAGCTCACCATCACCGGAGCAAGAGCCAAGAAGACGACGACGACGACGAGCTAGCAGCAGCATTGCAACCGACGGCAATGGAGGAGCAGCAGCAGGTGGAGGTGGAGGTGGAGGTGCCGTCCTACTTCGTGTGCCCCATCTCGCTGCAGATCATGCGCGACCCGGTGACGCTCCCCACCGGCATCACCTACGACCGCGACGGCATCGAGCGATGGCTCCTCACCGCCGGCACCTGCCCGCTCACCAAGCAGCCCGTGCCGCCCGACTGCGACCCCACGCCCAACCACACCCTGCGCCGCCTCATCCAGTCGTGGTGCGCCCTCCACGCCGACCATGGCGTCGACCTCGTCCCCACCCCCAAGCCCCCCGCCGACCGCGCCCGCGTCGCCGACCTCGTCTCCCGCCTCCGCGCCGCCACGAGCTCCGCTGCCCTCCTCGACGCGCTGCGCGAGCTCAGGGACGTTGCCGCCGAGAGCGAGCGTAACAGGAAGCTCCTCGCCGCCGTCCCCGGCGCGGTGGATGTTCTGGCCGCCGTCGTCGTCGCGTCGTGTCGAGACGCCAAGGCCGCGTGCGACGAGGCCCTCGAGATCGTCTGCTCGCTGGAGCTCTCGGAGCGGTGCCTGGCGCGGCTCGTCGAGAGGAACGAGGAGCTCGTCGACGCGCTCGTCGCCACGCTGCAGCGGACGAACACCACGTCCCGGGCGCACGCGGCGCTGCTCCTGGAGGCCGTGACGGCGGTCATGCCGTCGAACAGGCTGGTGTCCCTCCCGGAGGAGGTGTTCGGTGAGGCGGTGCAGCTGCTCCGCGACAGGGTATCGAGCCCGGCGACGAGGGCGGCGCTGCACGTGCTGGTCGGCACGACGTCGTGGGGCCGCAACCGCGTGAAGGCGGTGGACGCCGGCGCGGTGGCGGTGCTGGTCGACATGCTCCTGGACGGGCCAGTCGAGCGGCGCGGGTGCGAGCTGGCCCTGGCGGCGCTGGACCGGATGTGCGGGTGCGCGGAGGGGCGGGCGGCGCTGGTGTCGCACGGCGCGGGCGTGGCGGTGGTGGGGAGGAAGGTGCTGAGGGTGTCGGAGGTGGCGAGCGAGAAGGCGGTGCGGGTGCTGCGGTCGGTGGCGAGGCACGCGGCGACGGCGGCGGTGGTGCAGGAGATGGGGCAGACGGGGGCGGTGGAGAAGCTGTGCGTGGTGGCGCAGTCGGAGCAGTGCGGGGAGAGGACGCGGGAGCGGGCGCGGGAGACGCTGCGGCTGCACGCCAGAGCGTGGAGGAACTCGCCCTGCTTGCAGCCTCACCTCCAGGCCCTCTACCCTTCTTGCTGATCGAATTCTGATTCATGATCACCGGCCTCATCACTAGCTAGCTACCAACATACAGCACAGAGAGAATTGAACACTTGTTCGATTCTTCCTTTCGCTCGATTAATTTTATTGAGTTGAGATCGTTCGATGTAGTCCTATGAATCAAAGTGTACAGATCGACGCAATAGATGAACTAAATCATGCGCGAGCTTTTTTTG]

[+] EMBL AK108418             [CATCTCCCATCCACCATTGCTGCCATCTCCACCACATACAATACAACAACTACTACTCAGCTCACCATCACCGGAGCAAGAGCCAAGAAGACGACGACGACGACGAGCTAGCAGCAGCATTGCAACCGACGGCAATGGAGGAGCAGCAGCAGGTGGAGGTGGAGGTGGAGGTGCCGTCCTACTTCGTGTGCCCCATCTCGCTGCAGATCATGCGCGACCCGGTGACGCTCCCCACCGGCATCACCTACGACCGCGACGGCATCGAGCGATGGCTCCTCACCGCCGGCACCTGCCCGCTCACCAAGCAGCCCGTGCCGCCCGACTGCGACCCCACGCCCAACCACACCCTGCGCCGCCTCATCCAGTCGTGGTGCGCCCTCCACGCCGACCATGGCGTCGACCTCGTCCCCACCCCCAAGCCCCCCGCCGACCGCGCCCGCGTCGCCGACCTCGTCTCCCGCCTCCGCGCCGCCACGAGCTCCGCTGCCCTCCTCGACGCGCTGCGCGAGCTCAGGGACGTTGCCGCCGAGAGCGAGCGTAACAGGAAGCTCCTCGCCGCCGTCCCCGGCGCGGTGGATGTTCTGGCCGCCGTCGTCGTCGCGTCGTGTCGAGACGCCAAGGCCGCGTGCGACGAGGCCCTCGAGATCGTCTGCTCGCTGGAGCTCTCGGAGCGGTGCCTGGCGCGGCTCGTCGAGAGGAACGAGGAGCTCGTCGACGCGCTCGTCGCCACGCTGCAGCGGACGAACACCACGTCCCGGGCGCACGCGGCGCTGCTCCTGGAGGCCGTGACGGCGGTCATGCCGTCGAACAGGCTGGTGTCCCTCCCGGAGGAGGTGTTCGGTGAGGCGGTGCAGCTGCTCCGCGACAGGGTATCGAGCCCGGCGACGAGGGCGGCGCTGCACGTGCTGGTCGGCACGACGTCGTGGGGCCGCAACCGCGTGAAGGCGGTGGACGCCGGCGCGGTGGCGGTGCTGGTCGACATGCTCCTGGACGGGCCAGTCGAGCGGCGCGGGTGCGAGCTGGCCCTGGCGGCGCTGGACCGGATGTGCGGGTGCGCGGAAGGGCGGGCGGCGCTGGTGTCGCACGGCGCGGGCGTGGCGGTGGTGGGGAGGAAGGTGCTGAGGGTGTCGGAGGTGGCGAGCGAGAAGGCGGTGCGGGTGCTGCGGTCGGTGGCGAGGCACGCGGCGACGGCGGCGGTGGTGCAGGAGATGGGGCAGACGGGGGCGGTGGAGAAGCTGTGCGTGGTGGCGCAGTCGGAGCAGTGCGGGGAGAGGACGCGGGAGCGGGCGCGGGAGACGCTGCGGCTGCACGCCAGAGCGTGGAGGAACTCGCCCTGCTTGCAGCCTCACCTCCAGGCCCTCTACCCTTCTTGCTGATCGAATTCTGATTCATGATCACCGGCCTCATCACTAGCTAGCTACCAACATACAGCACAGAGAGAATTGAACACTTGTTCGATTCTTCCTTTCGCTCGATTAATTTTATTGAGTTGAGATCGTTCGATGTAGTCCTATGAATCAAAGTGTACAGATCGACGCAATAGATGAACTAAATCATGCGCGAGCTTTTTT  ]
[+] EMBL CB641925             [                      CCATCTCCACCACATACAATACAACAACTACTACTCAGCTCACCATCACCGGAGCAAGAGCCAAGAAGACGACGACGACGACGAGCTAGCAGCAGCATTGCAACCGACGGCAATGGAGGAGCAGCAGCAGGTGGAGGTGGAGGTGGAGGTGCCGTCCTACTTCGTGTGCCCCATCTCGCTGCAGATCATGCGCGACCCGGTGACGCTCCCCACCGGCATCACCTACGACCGCGACGGCATCGAGCGATGGCTCCTCACCGCCGGCACCTGCCCGCTCACCAAGCAGCCCGTGCCGCCCGACTGCGACCCCACGCCCAACCACACCCTGCGCCGCCTCATCCAGTCGTGGTGCGCCCTCCACGCCGACCATGGCGTCGACCTCGTCCCCACCCCCAAGCCCCCCGCCGACCGCGCCCGCGTCGCCGACCTCGTCTCCCGCCTCCGCGCCGCCACGAGCTCCGCTGCCCTCCTCGACGCGCTGCGCGAGCTCAGGGACGTTGCCGCCGAGAGCGAGCGTAACAGGAAGCTCCTCGCCGCCGTCCCCGGCGCGGTGGATGTTCTGGCCGCCGTCGTCGTCGCGTCGTGTCGAGACGCCAAGGCCGCGTGCGACGAGGCCCTCGAGATCGTCTGCTCGCTGGAGCTCTCGGAGCGGTGCCTGGCGCGGCTCGTCGAGAGGAACGAGGAGCTCGTCGACGCGCTCGTCGCCACGCTGCAGCGGACGAACACCACGTCCCGGGCGCACGCGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CB641964             [                      CCATCTCCACCACATACAATACAACAACTACTACTCAGCTCACCATCACCGGAGCAAGAGCCAAGAAGACGACGACGACGACGAGCTAGCAGCAGCATTGCAACCGACGGCAATGGAGGAGCAGCAGCAGGTGGAGGTGGAGGTGGAGGTGCCGTCCTACTTCGTGTGCCCCATCTCGCTGCAGATCATGCGCGACCCGGTGACGCTCCCCACCGGGATCACCTACGACCGCGACGGCATCGAGCGATGGCTCCTCACCGCCGGCACCTGCCCGCTCACCAAGCAGCCCGTGCCGCCCGACTGCGAGCCCACGCCCAACCACACCCTGCGCCGCCTCATCCAGTCGTGGTGCGCCCTCCACGCCGACCATGGCGTCGACCTCGTCCCCACCCCCAAGCCCCCCGCCGACCGCGCCCGCGTCGCCGACCTCGGCTCCCGCCTCCGCGCCGCCACGAGCTCCGCTGCCCTCCTCGACGCGCTGCGCGAGCTCAGGGACGTGGCCGCCGAGAGCGAGCGTAACAGGAAGCTCCTCGCCGCCGTGCCCGGAGCGGCGGATGTTCTGGCCGCCGTCGGCGGGACGTCGTGTCCAGACACCAAGGCCGCGTGCGACGAGGCCCTCCAGATCGGGTGCTgcgagg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CB641965             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TGCCGTCGAACAGGCTGGTGTCCCTCCCGGAGGAGGTGTTCGGTGAGGCGGTGCAGCTGCTCCGCGACAGGGTATCGAGCCCGGCGACGAGGGCGGCGCTGCACGTGCTGGTCGGCACGACGTCGTGGGGCCGCAACCGCGTGAAGGCGGTGGACGCCGGCGCGGTGGCGGTGCTGGTCGACATGCTCCTGGACGGGCCAGTCGAGCGGCGCGGGTGCGAGCTGGCCCTGGCGGCGCTGGACCGGATGTGCGGGTGCGCGGAGGGGCGGGCGGCGCTGGTGTCGCACGGCGCGGGCGTGGCGGTGGTGGGGAGGAAGGTGCTGAGGGTGTCGGAGGTGGCGAGCGAGAAGGCGGTGCGGGTGCTGCGGTCGGTGGCGAGGCACGCGGCGACGGCGGCGGTGGTGCAGGAGATGGGGCAGACGGGGGCGGTGGAGAAGCTGTGCGTGGTGGCGCAGTCGGAGCAGTGCGGGGAGAGGACGCGGGAGCGGGCGCGGGAGACGCTGCGGCTGCACGCCAGAGCGTGGAGGAACTCGCCCTGCTTGCAGCCTCACCTCCAGGCCCTCTACCCTTCTTGCTGATCGAATTCTGATTCATGATCACCGGCCTCATCACTAGCTAGCTACCAACATACAGCACAGAGAGAATTGAACACTTGTTCGATTCTTCCTTTCGCTCGATTAATTTTATTGAGTTGAGATCGTTCGATGTAGTCCTATGAATCAAAGTGTACAGATCGACGCAATAGATGAACTAAATCATGCGCGAGCTTTTTTTG]
[-] EMBL CB641926             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         CGAGCCCGGCGACGAGGGCGGCGCTGCACGTGCTGGTCGGCACGACGTCGTGGGGCCGCAACCGCGTGAAGGCGGTGGACGCCGGCGCGGTGGCGGTGCTGGTCGACATGCTCCTGGACGGGCCAGTCGAGCGGCGCGGGTGCGAGCTGGCCCTGGCGGCGCTGGACCGGATGTGCGGGTGCGCGGAGGGGCGGGCGGCGCTGGTGTCGCACGGCGCGGGCGTGGCGGTGGTGGGGAGGAAGGTGCTGAGGGTGTCGGAGGTGGCGAGCGAGAAGGCGGTGCGGGTGCTGCGGTCGGTGGCGAGGCACGCGGCGACGGCGGCGGTGGTGCAGGAGATGGGGCAGACGGGGGCGGTGGAGAAGCTGTGCGTGGTGGCGCAGTCGGAGCAGTGCGGGGAGAGGACGCGGGAGCGGGCGCGGGAGACGCTGCGGCTGCACGCCAGAGCGTGGAGGAACTCGCCCTGCTTGCAGCCTCACCTCCAGGCCCTCTACCCTTCTTGCTGATCGAATTCTGATTCATGATCACCGGCCTCATCACTAGCTAGCTACCAACATACAGCACAGAGAGAATTGAACACTTGTTCGATTCTTCCTTTCGCTCGATTAATTTTATTGAGTTGAGATCGTTCGATGTAGTCCTATGAATCAAAGTGTACAGATCGACGCAATAGATGAACTAAATCATGCGCGAGCTTTTTTTG]


>consensus_8045#0 CATCTCCCATCCACCATTGCTGCCATCTCCACCACATACAATACAACAACTACTACTCAG CTCACCATCACCGGAGCAAGAGCCAAGAAGACGACGACGACGACGAGCTAGCAGCAGCAT TGCAACCGACGGCAATGGAGGAGCAGCAGCAGGTGGAGGTGGAGGTGGAGGTGCCGTCCT ACTTCGTGTGCCCCATCTCGCTGCAGATCATGCGCGACCCGGTGACGCTCCCCACCGGCA TCACCTACGACCGCGACGGCATCGAGCGATGGCTCCTCACCGCCGGCACCTGCCCGCTCA CCAAGCAGCCCGTGCCGCCCGACTGCGACCCCACGCCCAACCACACCCTGCGCCGCCTCA TCCAGTCGTGGTGCGCCCTCCACGCCGACCATGGCGTCGACCTCGTCCCCACCCCCAAGC CCCCCGCCGACCGCGCCCGCGTCGCCGACCTCGTCTCCCGCCTCCGCGCCGCCACGAGCT CCGCTGCCCTCCTCGACGCGCTGCGCGAGCTCAGGGACGTTGCCGCCGAGAGCGAGCGTA ACAGGAAGCTCCTCGCCGCCGTCCCCGGCGCGGTGGATGTTCTGGCCGCCGTCGTCGTCG CGTCGTGTCGAGACGCCAAGGCCGCGTGCGACGAGGCCCTCGAGATCGTCTGCTCGCTGG AGCTCTCGGAGCGGTGCCTGGCGCGGCTCGTCGAGAGGAACGAGGAGCTCGTCGACGCGC TCGTCGCCACGCTGCAGCGGACGAACACCACGTCCCGGGCGCACGCGGCGCTGCTCCTGG AGGCCGTGACGGCGGTCATGCCGTCGAACAGGCTGGTGTCCCTCCCGGAGGAGGTGTTCG GTGAGGCGGTGCAGCTGCTCCGCGACAGGGTATCGAGCCCGGCGACGAGGGCGGCGCTGC ACGTGCTGGTCGGCACGACGTCGTGGGGCCGCAACCGCGTGAAGGCGGTGGACGCCGGCG CGGTGGCGGTGCTGGTCGACATGCTCCTGGACGGGCCAGTCGAGCGGCGCGGGTGCGAGC TGGCCCTGGCGGCGCTGGACCGGATGTGCGGGTGCGCGGAGGGGCGGGCGGCGCTGGTGT CGCACGGCGCGGGCGTGGCGGTGGTGGGGAGGAAGGTGCTGAGGGTGTCGGAGGTGGCGA GCGAGAAGGCGGTGCGGGTGCTGCGGTCGGTGGCGAGGCACGCGGCGACGGCGGCGGTGG TGCAGGAGATGGGGCAGACGGGGGCGGTGGAGAAGCTGTGCGTGGTGGCGCAGTCGGAGC AGTGCGGGGAGAGGACGCGGGAGCGGGCGCGGGAGACGCTGCGGCTGCACGCCAGAGCGT GGAGGAACTCGCCCTGCTTGCAGCCTCACCTCCAGGCCCTCTACCCTTCTTGCTGATCGA ATTCTGATTCATGATCACCGGCCTCATCACTAGCTAGCTACCAACATACAGCACAGAGAG AATTGAACACTTGTTCGATTCTTCCTTTCGCTCGATTAATTTTATTGAGTTGAGATCGTT CGATGTAGTCCTATGAATCAAAGTGTACAGATCGACGCAATAGATGAACTAAATCATGCG CGAGCTTTTTTTG



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)