cluster # 8050

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Oryza sativa
cluster # 8050 cluster # 8050 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8050#0 length = 735 sequences # 4

consensus_8050#1 length = 472 sequences # 1

consensusID : consensus_8050#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 735
fasta sequence

                              [AAAGCACAGTTGGCTAGTAAAAATGACTCTAAACCATCAAATCCAAGCCGGCAAGTGAAACAAACGCCAGATACTAAAACAAGAGCTGCAAGCAGACGAGGAAAAGATGTAGGTTGATCTCCACGACCAACTCTGTTGTTGCGCTTATGATCTGCATGCTGGGCGAATGCATGACCTGCTCGATGCACGGGGAGGGCAAGAAAAGTTGTGTAAATGATGCAGCCATCAATGGAAACAGCATGGCTGCACCATAGCAACTGTACATGACGCCCTTTACGTTCGCACTAGCGATGGCCGGTTTTTTTCTCTTCGGCCAGCAGGGCCGCCCAGTGGCAACTTCTGACTGCTGTAAAGAACTAACACTAACAGCAAAGCTAACATCATTCG-TTTTTTCCTTTGTTTTTTATGTTACTTGTCCATTCTTTCT-AACCCCAGTGGCCAAGTGCAGCCAATGCTTCAGGAGTAGAGCCTCGTAGTATCGTAGTAGGTAGGTAGAAATTGTACAAATAGGAACAGGGAAAGGGTAGGGAAACCATGTGGGGCGGAGAAATTGTAGCTGGGATCTATACGAGATGTAAACATGCGTGTGCTTCACGAATATTTTTTTTTGTAGTGAATGTACCAAGGTTTTCATAATTAGTGAATGCAGCAGCTTTTCCATGATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK120222             [AAAGCACAGTTGGCTAGTAAAAATGACTCTAAACCATCAAATCCAAGCCGGCAAGTGAAACAAACGCCAGATACTAAAACAAGAGCTGCAAGCAGACGAGGAAAAGATGTAGGTTGATCTCCACGACCAACTCTGTTGTTGCGCTTATGATCTGCATGCTGGGCGAATGCATGACCTGCTCGATGCACGGGGAGGGCAAGAAAAGTTGTGTAAATGATGCAGCCATCAATGGAAACAGCATGGCTGCACCATAGCAACTGTACATGACGCCCTTTACGTTCGCACTAGCGATGGCCGGTTTTTTTCTCTTCGGCCAGCAGGGCCGCCCAGTGGCAACTTCTGACTGCTGTAAAGAACTAACACTAACAGCAAAGCTAACATCATTCG TTTTTTCCTTTGTTTTTTATGTTACTTGTCCATTCTTTCT AACCCCAGTGGCCAAGTGCAGCCAATGCTTCAGGAGTAGAGCCTCGTAGTATCGTAGTAGGTAGGTAGAAATTGTACAAATAGGAACAGGGAAAGGGTAGGGAAACCATGTGGGGCGGAGAAATTGTAGCTGGGATCTATACGAGATGTAAACATGCGTGTGCTTCACGAATATTTTTTTTTGTAGTGAATGTACCAAGGTTTTCATAATTAGTGAATGCAGCAGCTT                                                                                ]
[-] EMBL CB627621             [ AAGCACAGTTGGCTAGTAAAAATGACTCTAAACCATCAAATCCAAGCCGGCAAGTGAAACAAACGCCAGATACTAAAACAAGAGCTGCAAGCAGACGAGGAAAAGATGTAGGTTGATCTCCCCGACCAACTCTGTTGTTGCGCTTATGATCTGCATGCTGGGCGAATGCATGACCTGCTCGATGCACGGGGAGGGCAAGAAAAGTTGTGTAAATGATGCAGCCATCAATGGAAACAGCATGGCTGCACCATAGCAACTGTACATGACGCCCTTTACGTTCGCACTAGCGATGGCCGGTTTTTTTCTCTTCGGCCAGCAGGGCCGCCCAGTGGCAACTTCTGACTGCTGTAAAGAACTAACACTAACAGCAAAGCTAACATCATTCGTTTTTTTCCTTTGTTTTTTATGTTACTTGTCCATTCTTTCTAAACCCCAGTGGCCAAGTGCAGCCAATGCTTCAGGAGTAGAGCCTCGTAGTATCGTAGTAGGTAGGTAGAAATTGTACAAATAGGAACAGGGAAAGGGTAAGGAAACCATGTGGGGCGGAGAAATTGTAGCTGGGATCTATACGAGATGTAAACATGCGTGTGCTTCAAGGATATTTTTTTTTGTAGTGAATGTACCAAGGTTTT                                                                                                        ]
[-] EMBL CB636369             [                                                                                                                                                                                                                                      GGAAGCAGCATGGCTGCCCCATAGCAACTGAACATGACGCCCTTCCCGTTCGCACTAACGATGGCCGGTTTTTTTTTTTTCGGCCAGCAGGCCCGCCCAGTGGCAAGTTATGTCTGCTGTAAAGAACTAACACTACCAGCAAAGCTAACATCATTCG TTTTTTCCTTCGTTTTTTATGTAACTTGTCCATTCTTTCT AACCCCACTGGCCAAGTGCAGCCAATGCTTCAGTAGTAGAGCCTCCTAGTATGGTAGTAGGTAGGTAGGAATTGTACAAATAGGAACAGGCAAAGGGTAGGGAAACCATCTGGGGCGGAGAAATTGTATCTGGGATGTATACAAGATGTAAACATGCGTGTGCTTCACGAA ATTTTTTTTTGTAGTGAATGAACCAAGGTTTTCATTATTAG                                                                                               ]
[+] EMBL CF332377             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TATCGTAGTAGGTAGGTAGAAATTGTACAAATAGGAACAGGGAAAGGGTAGGGAAACCATGTGGGGCGGAGAAATTGTAGCTGGGATCTATACGAGATGTAAACATGCGTGTGCTTCACGAATATTTTTTTTTGTAGTGAATGTACCAAGGTTTTCATAATTAGTGAATGCAGCAGCTTTTCCATGATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_8050#0
AAAGCACAGTTGGCTAGTAAAAATGACTCTAAACCATCAAATCCAAGCCGGCAAGTGAAA
CAAACGCCAGATACTAAAACAAGAGCTGCAAGCAGACGAGGAAAAGATGTAGGTTGATCT
CCACGACCAACTCTGTTGTTGCGCTTATGATCTGCATGCTGGGCGAATGCATGACCTGCT
CGATGCACGGGGAGGGCAAGAAAAGTTGTGTAAATGATGCAGCCATCAATGGAAACAGCA
TGGCTGCACCATAGCAACTGTACATGACGCCCTTTACGTTCGCACTAGCGATGGCCGGTT
TTTTTCTCTTCGGCCAGCAGGGCCGCCCAGTGGCAACTTCTGACTGCTGTAAAGAACTAA
CACTAACAGCAAAGCTAACATCATTCGTTTTTTCCTTTGTTTTTTATGTTACTTGTCCAT
TCTTTCTAACCCCAGTGGCCAAGTGCAGCCAATGCTTCAGGAGTAGAGCCTCGTAGTATC
GTAGTAGGTAGGTAGAAATTGTACAAATAGGAACAGGGAAAGGGTAGGGAAACCATGTGG
GGCGGAGAAATTGTAGCTGGGATCTATACGAGATGTAAACATGCGTGTGCTTCACGAATA
TTTTTTTTTGTAGTGAATGTACCAAGGTTTTCATAATTAGTGAATGCAGCAGCTTTTCCA
TGATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAA

consensusID : consensus_8050#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 472
fasta sequence

                              [AAGCACAGTTGGCTAGTAAAAATGACTCTAAACCATCAAATCCAAGCCGGCAAGTGAAACAAACGCCAGATACTAAAACAAGAGCTGCAAGCAGACGAGGAAAAGATGTAGGTTGATCTCCCCGACCAACTCTGTTGTTGCGCTTATGATCTGCATGCTGGGCGAATGCATGACCTGCTCGATGCACGGGGTGGGCAAGAAAAGTTGTGTAAATGATGCAGCCATCAATGGAAACAGCATGGCTGCACCATAGCAACTGTACATGACGCCCTTTACGTTCGCACTAGCGATGGCCGGTTTTTTTCTCTTCGGCCAGCAGGGCCGCCCAGTGGCAACTTCTGACTGCTGTAAAGAACTAACACTAACAGCAAAGCTAACATCATTCGTTTTTTTCCTTTGTTTTTTATGTTACTTGTCCATTCTTTCTANNNNNAGTNGCCAANTGCAGCCAATGCTTNNNNNNNNNNNNCTC]

[+] EMBL CF195911             [AAGCACAGTTGGCTAGTAAAAATGACTCTAAACCATCAAATCCAAGCCGGCAAGTGAAACAAACGCCAGATACTAAAACAAGAGCTGCAAGCAGACGAGGAAAAGATGTAGGTTGATCTCCCCGACCAACTCTGTTGTTGCGCTTATGATCTGCATGCTGGGCGAATGCATGACCTGCTCGATGCACGGGGTGGGCAAGAAAAGTTGTGTAAATGATGCAGCCATCAATGGAAACAGCATGGCTGCACCATAGCAACTGTACATGACGCCCTTTACGTTCGCACTAGCGATGGCCGGTTTTTTTCTCTTCGGCCAGCAGGGCCGCCCAGTGGCAACTTCTGACTGCTGTAAAGAACTAACACTAACAGCAAAGCTAACATCATTCGTTTTTTTCCTTTGTTTTTTATGTTACTTGTCCATTCTTTCTANNNNNAGTNGCCAANTGCAGCCAATGCTTNNNNNNNNNNNNCTC]




>consensus_8050#1
AAGCACAGTTGGCTAGTAAAAATGACTCTAAACCATCAAATCCAAGCCGGCAAGTGAAAC
AAACGCCAGATACTAAAACAAGAGCTGCAAGCAGACGAGGAAAAGATGTAGGTTGATCTC
CCCGACCAACTCTGTTGTTGCGCTTATGATCTGCATGCTGGGCGAATGCATGACCTGCTC
GATGCACGGGGTGGGCAAGAAAAGTTGTGTAAATGATGCAGCCATCAATGGAAACAGCAT
GGCTGCACCATAGCAACTGTACATGACGCCCTTTACGTTCGCACTAGCGATGGCCGGTTT
TTTTCTCTTCGGCCAGCAGGGCCGCCCAGTGGCAACTTCTGACTGCTGTAAAGAACTAAC
ACTAACAGCAAAGCTAACATCATTCGTTTTTTTCCTTTGTTTTTTATGTTACTTGTCCAT
TCTTTCTANNNNNAGTNGCCAANTGCAGCCAATGCTTNNNNNNNNNNNNCTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8050#0      AAAGCACAGTTGGCTAGTAAAAATGACTCTAAACCATCAAATCCAAGCCGGCAAGTGAAA 60
consensus_8050#1      -AAGCACAGTTGGCTAGTAAAAATGACTCTAAACCATCAAATCCAAGCCGGCAAGTGAAA 59
                       ***********************************************************

consensus_8050#0      CAAACGCCAGATACTAAAACAAGAGCTGCAAGCAGACGAGGAAAAGATGTAGGTTGATCT 120
consensus_8050#1      CAAACGCCAGATACTAAAACAAGAGCTGCAAGCAGACGAGGAAAAGATGTAGGTTGATCT 119
                      ************************************************************

consensus_8050#0      CCACGACCAACTCTGTTGTTGCGCTTATGATCTGCATGCTGGGCGAATGCATGACCTGCT 180
consensus_8050#1      CCCCGACCAACTCTGTTGTTGCGCTTATGATCTGCATGCTGGGCGAATGCATGACCTGCT 179
                      ** *********************************************************

consensus_8050#0      CGATGCACGGGGAGGGCAAGAAAAGTTGTGTAAATGATGCAGCCATCAATGGAAACAGCA 240
consensus_8050#1      CGATGCACGGGGTGGGCAAGAAAAGTTGTGTAAATGATGCAGCCATCAATGGAAACAGCA 239
                      ************ ***********************************************

consensus_8050#0      TGGCTGCACCATAGCAACTGTACATGACGCCCTTTACGTTCGCACTAGCGATGGCCGGTT 300
consensus_8050#1      TGGCTGCACCATAGCAACTGTACATGACGCCCTTTACGTTCGCACTAGCGATGGCCGGTT 299
                      ************************************************************

consensus_8050#0      TTTTTCTCTTCGGCCAGCAGGGCCGCCCAGTGGCAACTTCTGACTGCTGTAAAGAACTAA 360
consensus_8050#1      TTTTTCTCTTCGGCCAGCAGGGCCGCCCAGTGGCAACTTCTGACTGCTGTAAAGAACTAA 359
                      ************************************************************

consensus_8050#0      CACTAACAGCAAAGCTAACATCATTCGTTTTTT-CCTTTGTTTTTTATGTTACTTGTCCA 419
consensus_8050#1      CACTAACAGCAAAGCTAACATCATTCGTTTTTTTCCTTTGTTTTTTATGTTACTTGTCCA 419
                      ********************************* **************************

consensus_8050#0      TTCTTTCTAACCCCAGTGGCCAAGTGCAGCCAATGCTTCAGGAGTAGAGCCTCGTAGTAT 479
consensus_8050#1      TTCTTTCTANNNNNAGTNGCCAANTGCAGCCAATGCTTNNNNNNNNNNNNCTC------- 472
                      *********     *** ***** **************            ***       

consensus_8050#0      CGTAGTAGGTAGGTAGAAATTGTACAAATAGGAACAGGGAAAGGGTAGGGAAACCATGTG 539
consensus_8050#1      ------------------------------------------------------------
                                                                                  

consensus_8050#0      GGGCGGAGAAATTGTAGCTGGGATCTATACGAGATGTAAACATGCGTGTGCTTCACGAAT 599
consensus_8050#1      ------------------------------------------------------------
                                                                                  

consensus_8050#0      ATTTTTTTTTGTAGTGAATGTACCAAGGTTTTCATAATTAGTGAATGCAGCAGCTTTTCC 659
consensus_8050#1      ------------------------------------------------------------
                                                                                  

consensus_8050#0      ATGATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 719
consensus_8050#1      ------------------------------------------------------------
                                                                                  

consensus_8050#0      AAAAAAAAAAAAAAAA 735
consensus_8050#1      ----------------