These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8054#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1497 fasta sequence [AGTTTCCGAAATCCCCGATTCTTCTCCTTGTAGGAAAAGGCATTGACTTGCCCCTTCCTCCTTCGATCCGCGGTCTAGCCAGCTGGTTGCTGATTCGCTGCTTGTTCGGATTGATTCGATTCGTCGTCCATGGATCGTCGTGACGATTCTTGCTGCCCCGGCGGCGGCGGCGGCGTCTCATCTCTGATCGGAGAATTTGTTGGGGACGTGGTGATGTGGCGGCGGGGCGACGTGAGCGCCTGCCTGCTGGCGGCGACCGTCTCCGGCTGGCTGCTCTTCGGCTCCGGCGGCTACACCTTCCTCTCCCTCGCCTCCAACGTCCTCCTCCTCCTCCTCACCGTCCTCTTCCTCTGGGCCAAGGCCGCCCGCCTCCTCAACAGGAATGGAATTTCTGTTGGACTCTACTTTCCATTTTGGGATACAGATTTCAGTTGATAGTTAACCAATGGAAGGAACAATCCAGGCACTTAATTCTTATCATCATCACAGCTTTCACTGTTGTTTTGACATTCCTCCATCAATTTAATCATTATTACTTCAGTTAGAGGATTAGGTGGATGCTTTGAACTTTGACCAAATTTATGCTAATTGACAATCTAACAACCAGCCAGGTGATACTGATGTCAGATTAGGTACGTGCTGTAAACTATTTTAACTGAAATGCTAAGGGTAGACAATGATAAGCTTTGTCTTGCAAACAGCTTACTGTTTTTTACTTCAATCAGATGAGTGAATTGCTCATCGCTGTGGACATTTGGCAAATATTTTAAACGATGCTGGTTGTGTTGTGCAAACAAATGAGGTTGCAGGCCAGAGCCACCTATTCCAGAGATGCGCATTTCGCAGCAGGTTGTGAATGAAGTGGCAGCCCTGCTGCATTCTGGCATGAACACGGTCTTCTCTGTCTTCCATGACATCGCACTCGGGAAAGACTCGGTGCTATTTTATCAAGTCTT-CCTTAGCCTGTGGATCATTTCTATCATTGGCAGCCTGACTGATTTCACCACTTT-ATGTTACACAAGTATTGTTGCTGTTCTGACCATCCCTGCATTGTACCAGAAGTATGAGGAATGCATTGACAGATACATGAGGTTTGCGTATTTGAACCTGCAGATGTACGAGATGGTGTACGAGAGATTCTCTGCCAAGTGCTTCCACAGGGCTAGGGATTTGGTTATTGAGGTTCTGAAAGAGCCATGACCTGATCAATATTGTGTTTGCTTGTACAAGATGGTGGAATTGGGTTTTTAACTGGATGATGATTGATTTGTTGTTTCCTGTATAGAGAGAGGGATAGGTTGATTGATTTTTTCCCCCATGGAGTGCTGGTTTTGTTTGTTTGATTTCAATCATATGCAGATAGTTGGGGCCTTGATGGTCAGAGATGCAGTTCTTGTTGAGATGCCTGTAATGGTTGCGTTTGTAAATTGTGTCCAAAGGGACAAAACAGTGTGCAGATTTTGGTTTCTTTTGGCCTTCGATCAAAAAAAAAAAAAN] [+] EMBL AK100139 [AGTTTCCGAAATCCCCGATTCTTCTCCTTGTAGGAAAAGGCATTGACTTGCCCCTTCCTCCTTCGATCCGCGGTCTAGCCAGCTGGTTGCTGATTCGCTGCTTGTTCGGATTGATTCGATTCGTCGTCCATGGATCGTCGTGACGATTCTTGCTGCCCCGGCGGCGGCGGCGGCGTCTCATCTCTGATCGGAGAATTTGTTGGGGACGTGGTGATGTGGCGGCGGGGCGACGTGAGCGCCTGCCTGCTGGCGGCGACCGTCTCCGGCTGGCTGCTCTTCGGCTCCGGCGGCTACACCTTCCTCTCCCTCGCCTCCAACGTCCTCCTCCTCCTCCTCACCGTCCTCTTCCTCTGGGCCAAGGCCGCCCGCCTCCTCAACAGGAATGGAATTTCTGTTGGACTCTACTTTCCATTTTGGGATACAGATTTCAGTTGATAGTTAACCAATGGAAGGAACAATCCAGGCACTTAATTCTTATCATCATCACAGCTTTCACTGTTGTTTTGACATTCCTCCATCAATTTAATCATTATTACTTCAGTTAGAGGATTAGGTGGATGCTTTGAACTTTGACCAAATTTATGCTAATTGACAATCTAACAACCAGCCAGGTGATACTGATGTCAGATTAGGTACGTGCTGTAAACTATTTTAACTGAAATGCTAAGGGTAGACAATGATAAGCTTTGTCTTGCAAACAGCTTACTGTTTTTTACTTCAATCAGATGAGTGAATTGCTCATCGCTGTGGACATTTGGCAAATATTTTAAACGATGCTGGTTGTGTTGTGCAAACAAATGAGGTTGCAGGCCAGAGCCACCTATTCCAGAGATGCGCATTTCGCAGCAGGTTGTGAATGAAGTGGCAGCCCTGCTGCATTCTGGCATGAACACGGTCTTCTCTGTCTTCCATGACATCGCACTCGGGAAAGACTCGGTGCTATTTTATCAAGTCTT CCTTAGCCTGTGGATCATTTCTATCATTGGCAGCCTGACTGATTTCACCACTTT ATGTTACACAAGTATTGTTGCTGTTCTGACCATCCCTGCATTGTACCAGAAGTATGAGGAATGCATTGACAGATACATGAGGTTTGCGTATTTGAACCTGCAGATGTACGAGATGGTGTACGAGAGATTCTCTGCCAAGTGCTTCCACAGGGCTAGGGATTTGGTTATTGAGGTTCTGAAAGAGCCATGACCTGATCAATATTGTGTTTGCTTGTACAAGATGGTGGAATTGGGTTTTTAACTGGATGATGATTGATTTGTTGTTTCCTGTATAGAGAGAGGGATAGGTTGATTGATTTTTTCCCCCATGGAGTGCTGGTTTTGTTTGTTTGATTTCAATCATATGCAGATAGTTGGGGCCTTGATGGTCAGAGATGCAGTTCTTGTTGAGATGCCTGTAATGGTTGCGTTTGTAAATTGTGTCCAAAGGGACAAAACAGTGTGCAGATTTTGGTTTCTTTTGGCCTTCGATC ] [+] EMBL AU082733 [ ACTCGGTGCNATTTTATCAAGTCTTCCCTTANCCTGTGGATCATTTCTATCATTGGCAGCCTGACTGATTTCACCACTTTAATGTTACACAAGTATTGTTGCTGTTCTGACCATCCCTGCATTGTACCAGAAGTATGAGGAATGCATTGACAGATACATGAGGTTTGCGTATTTGAACCTGCAGATGTACGAGATGGTGTACGAGAGATTCTCTGCCAAGTGCTTCCACAGGGCTAGGGATTTGGTTATTGAGGNTCTGAAAGAGCCATGACCTGATCAATATTGTGTTTGCTTGTACAAGATGGTGGAATTGGGTTTTTAACTGGATGATGATTGATTTGTTGTTTCCTGTATAGAGAGAGGGATAGGTTGATTGATTTTTTCCCCCATGGAGTGCTGGTTTTGTTTGTTTGATTTCAATCATATGCAGATAGTTGGGGCCTTGATGGTCAGAGATGCAGTTCTTGTTGAGATGCCTGTAATGGTTGCGTTTGTAAATTGTGTCCAAAGGGACAAAACAGTGTGCAGATTTTGGTTTCTTTTGGCCTTCAAAAAAAAAAAAAAAAAN] consensusID : consensus_8054#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1109 fasta sequence [GGCATTGACTTGCCCCTTCCTCCTTCGATCCGCGGTCTAGCCAGCTGGTTGCTGATTCGCTGCTTGTTCGGATTGATTCGATTCGTCGTCCATGGATCGTCGTGACGATTCTTGCTGCCCCGGCGGCGGCGGCGGCGTCTCATCTCTGATCGGAGAATTTGTTGGGGACGTGGTGATGTGGCGGCGGGGCGACGTGAGCGCCTGCCTGCTGGCGGCGACCGTCTCCGGCTGGCTGCTCTTCGGCTCCGGCGGCTACACCTTCCTCTCCCTCGCCTCCAACGTCCTCCTCCTCCTCCTCACCGTCCTCTTCCTCTGGGCCAAGGCCGCCCGCCTCCTCAACAGGCCAGAGCCACCTATTCCAGAGATGCGCATTTCGCAGCAGGTTGTGAATGAAGTNGCAGCCCTGCTGCATTCTGGCATGAACACGGTCTTCTCTGTCTTCCATGACATCGCACTCGGGAAAGACTCGGTGCTATTTTATCAAGTCTTCCTTAGCCTGTGGATCATTTCTATCATTGGCAGCCTGACTGATTTCACCACTTTATGTTACACAAGTATTGTTGCTGTTCTGACCATCCCTGCATTGTACCAGAAGTATGAGGAATGCATTGACAGATACATGAGGTTTGCGTATTTGAACCTGCAGATGTACGAGATGGTGTACGAGAGATTCTCTGCCAAGTGCTTCCACAGGGCTAGGGATTTGGTTATTGAGGTTCTGAAAGAGCCATGACCTGATCAATATTGTGTTTGCTTGTACAAGATGGTGGAATTGGGTTTTTAACTGGATGATGATTGATTTGTTGTTTCCTGTATAGAGAGAGGGATAGGTTGATTGATTTTTTCCCCCATGGAGTGCTGGTTTTGTTTGTTTGATTTCAATCATATGCAGATAGTTGGGGCCTTGATGGTCAGAGATGCAGTTCTTGTTGAGATGCCTGTAATGGTTGCGTTTGTAAATTGTGTCCAAAGGGACAAAACAGTGTGCAGATTTTGGTTTCTTTTGGCCTTCGATCACTAGTTTTCAGGGTTTTTTCTTTATGTCCACTGCGAAATGGAGTGACAATATTGTGTAAGAACACAATAGCATTCAGATTTCTGAGAACCTC] [+] EMBL AK061121 [GGCATTGACTTGCCCCTTCCTCCTTCGATCCGCGGTCTAGCCAGCTGGTTGCTGATTCGCTGCTTGTTCGGATTGATTCGATTCGTCGTCCATGGATCGTCGTGACGATTCTTGCTGCCCCGGCGGCGGCGGCGGCGTCTCATCTCTGATCGGAGAATTTGTTGGGGACGTGGTGATGTGGCGGCGGGGCGACGTGAGCGCCTGCCTGCTGGCGGCGACCGTCTCCGGCTGGCTGCTCTTCGGCTCCGGCGGCTACACCTTCCTCTCCCTCGCCTCCAACGTCCTCCTCCTCCTCCTCACCGTCCTCTTCCTCTGGGCCAAGGCCGCCCGCCTCCTCAACAGGCCAGAGCCACCTATTCCAGAGATGCGCATTTCGCAGCAGGTTGTGAATGAAGTGGCAGCCCTGCTGCATTCTGGCATGAACACGGTCTTCTCTGTCTTCCATGACATCGCACTCGGGAAAGACTCGGTGCTATTTTATCAAGTCTTCCTTAGCCTGTGGATCATTTCTATCATTGGCAGCCTGACTGATTTCACCACTTTATGTTACACAAGTATTGTTGCTGTTCTGACCATCCCTGCATTGTACCAGAAGTATGAGGAATGCATTGACAGATACATGAGGTTTGCGTATTTGAACCTGCAGATGTACGAGATGGTGTACGAGAGATTCTCTGCCAAGTGCTTCCACAGGGCTAGGGATTTGGTTATTGAGGTTCTGAAAGAGCCATGACCTGATCAATATTGTGTTTGCTTGTACAAGATGGTGGAATTGGGTTTTTAACTGGATGATGATTGATTTGTTGTTTCCTGTATAGAGAGAGGGATAGGTTGATTGATTTTTTCCCCCATGGAGTGCTGGTTTTGTTTGTTTGATTTCAATCATATGCAGATAGTTGGGGCCTTGATGGTCAGAGATGCAGTTCTTGTTGAGATGCCTGTAATGGTTGCGTTTGTAAATTGTGTCCAAAGGGACAAAACAGTGTGCAGATTTTGGTTTCTTTTGGCCTTCGATCACTAGTTTTCAGGGTTTTTTCTTTATGTCCACTGCGAAATGGAGTGACAATATTGTGTAAGAACACAATAGCATTCAGATTTCTGAGAACCTC] [+] EMBL AY164902 [ AGCTGGTTGCTGATTCGCTGCTTGTTCGGATTGATTCGATTCGTCGTCCATGGATCGTCGTGACGATTCTTGCTGCCCCGGCGGCGGCGGCGGCGTCTCATCTCTGATCGGAGAATTTGTTGGGGACGTGGTGATGTGGCGGCGGGGCGACGTGAGCGCCTGCCTGCTGGCGGCGACCGTCTCCGGCTGGCTGCTCTTCGGCTCCGGCGGCTACACCTTCCTCTCCCTCGCCTCCAACGTCCTCCTCCTCCTCCTCACCGTCCTCTTCCTCTGGGCCAAGGCCGCCCGCCTCCTCAACAGGCCAGAGCCACCTATTCCAGAGATGCGCATTTCGCAGCAGGTTGTGAATGAAGTNGCAGCCCTGCTGCATTCTGGCATGAACACGGTCTTCTCTGTCTTCCATGACATCGCACTCGGGAAAGACTCGGTGCTATTTTATCAAGT ] [+] EMBL AU082732 [ AGCTGGTTGCTGATTCGCTGCTTGTTCGGATTGATTCGATTCGTCGTCCATGGATCGTCGTGACGATTCTTGCTGCCCCGGCGGCGGCGGCGGCGTCTCATCTCTGATCGGAGAATTTGTTGGGGACGTGGTGATGTGGCGGCGGGGCGACGTGAGCGCCTGCCTGCTGGCGGCGACCGTCTCCGGCTGGCTGCTCTTCGGCTCCGGCGGCTACACCTTCCTCTCCCTCGCCTCCAACGTCCTCCTCCTCCTCCTCACCGTCCTCTTCCTCTGGGCCAAGGCCGCCCGCCTCCTCAACAGGCCAGAGCCACCTATTCCAGAGATGCGCATTTCGCAGCAGGTTGTGAATGAAGTNGCAGCCCTGCTGCATTCTGGCATGAACACGGTCTTCTCTGTCTTCCATGACATCGCACTCGGGAAAGACTCGGTGCTATTTTATCAAGT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8054#0 AGTTTCCGAAATCCCCGATTCTTCTCCTTGTAGGAAAAGGCATTGACTTGCCCCTTCCTC 60 consensus_8054#1 --------------------------------------GGCATTGACTTGCCCCTTCCTC 22 ********************** consensus_8054#0 CTTCGATCCGCGGTCTAGCCAGCTGGTTGCTGATTCGCTGCTTGTTCGGATTGATTCGAT 120 consensus_8054#1 CTTCGATCCGCGGTCTAGCCAGCTGGTTGCTGATTCGCTGCTTGTTCGGATTGATTCGAT 82 ************************************************************ consensus_8054#0 TCGTCGTCCATGGATCGTCGTGACGATTCTTGCTGCCCCGGCGGCGGCGGCGGCGTCTCA 180 consensus_8054#1 TCGTCGTCCATGGATCGTCGTGACGATTCTTGCTGCCCCGGCGGCGGCGGCGGCGTCTCA 142 ************************************************************ consensus_8054#0 TCTCTGATCGGAGAATTTGTTGGGGACGTGGTGATGTGGCGGCGGGGCGACGTGAGCGCC 240 consensus_8054#1 TCTCTGATCGGAGAATTTGTTGGGGACGTGGTGATGTGGCGGCGGGGCGACGTGAGCGCC 202 ************************************************************ consensus_8054#0 TGCCTGCTGGCGGCGACCGTCTCCGGCTGGCTGCTCTTCGGCTCCGGCGGCTACACCTTC 300 consensus_8054#1 TGCCTGCTGGCGGCGACCGTCTCCGGCTGGCTGCTCTTCGGCTCCGGCGGCTACACCTTC 262 ************************************************************ consensus_8054#0 CTCTCCCTCGCCTCCAACGTCCTCCTCCTCCTCCTCACCGTCCTCTTCCTCTGGGCCAAG 360 consensus_8054#1 CTCTCCCTCGCCTCCAACGTCCTCCTCCTCCTCCTCACCGTCCTCTTCCTCTGGGCCAAG 322 ************************************************************ consensus_8054#0 GCCGCCCGCCTCCTCAACAGGAATGGAATTTCTGTTGGACTCTACTTTCCATTTTGGGAT 420 consensus_8054#1 GCCGCCCGCCTCCTCAACAGG--------------------------------------- 343 ********************* consensus_8054#0 ACAGATTTCAGTTGATAGTTAACCAATGGAAGGAACAATCCAGGCACTTAATTCTTATCA 480 consensus_8054#1 ------------------------------------------------------------ consensus_8054#0 TCATCACAGCTTTCACTGTTGTTTTGACATTCCTCCATCAATTTAATCATTATTACTTCA 540 consensus_8054#1 ------------------------------------------------------------ consensus_8054#0 GTTAGAGGATTAGGTGGATGCTTTGAACTTTGACCAAATTTATGCTAATTGACAATCTAA 600 consensus_8054#1 ------------------------------------------------------------ consensus_8054#0 CAACCAGCCAGGTGATACTGATGTCAGATTAGGTACGTGCTGTAAACTATTTTAACTGAA 660 consensus_8054#1 ------------------------------------------------------------ consensus_8054#0 ATGCTAAGGGTAGACAATGATAAGCTTTGTCTTGCAAACAGCTTACTGTTTTTTACTTCA 720 consensus_8054#1 ------------------------------------------------------------ consensus_8054#0 ATCAGATGAGTGAATTGCTCATCGCTGTGGACATTTGGCAAATATTTTAAACGATGCTGG 780 consensus_8054#1 ------------------------------------------------------------ consensus_8054#0 TTGTGTTGTGCAAACAAATGAGGTTGCAGGCCAGAGCCACCTATTCCAGAGATGCGCATT 840 consensus_8054#1 ------------------------------CCAGAGCCACCTATTCCAGAGATGCGCATT 373 ****************************** consensus_8054#0 TCGCAGCAGGTTGTGAATGAAGTGGCAGCCCTGCTGCATTCTGGCATGAACACGGTCTTC 900 consensus_8054#1 TCGCAGCAGGTTGTGAATGAAGTNGCAGCCCTGCTGCATTCTGGCATGAACACGGTCTTC 433 *********************** ************************************ consensus_8054#0 TCTGTCTTCCATGACATCGCACTCGGGAAAGACTCGGTGCTATTTTATCAAGTCTTCCTT 960 consensus_8054#1 TCTGTCTTCCATGACATCGCACTCGGGAAAGACTCGGTGCTATTTTATCAAGTCTTCCTT 493 ************************************************************ consensus_8054#0 AGCCTGTGGATCATTTCTATCATTGGCAGCCTGACTGATTTCACCACTTTATGTTACACA 1020 consensus_8054#1 AGCCTGTGGATCATTTCTATCATTGGCAGCCTGACTGATTTCACCACTTTATGTTACACA 553 ************************************************************ consensus_8054#0 AGTATTGTTGCTGTTCTGACCATCCCTGCATTGTACCAGAAGTATGAGGAATGCATTGAC 1080 consensus_8054#1 AGTATTGTTGCTGTTCTGACCATCCCTGCATTGTACCAGAAGTATGAGGAATGCATTGAC 613 ************************************************************ consensus_8054#0 AGATACATGAGGTTTGCGTATTTGAACCTGCAGATGTACGAGATGGTGTACGAGAGATTC 1140 consensus_8054#1 AGATACATGAGGTTTGCGTATTTGAACCTGCAGATGTACGAGATGGTGTACGAGAGATTC 673 ************************************************************ consensus_8054#0 TCTGCCAAGTGCTTCCACAGGGCTAGGGATTTGGTTATTGAGGTTCTGAAAGAGCCATGA 1200 consensus_8054#1 TCTGCCAAGTGCTTCCACAGGGCTAGGGATTTGGTTATTGAGGTTCTGAAAGAGCCATGA 733 ************************************************************ consensus_8054#0 CCTGATCAATATTGTGTTTGCTTGTACAAGATGGTGGAATTGGGTTTTTAACTGGATGAT 1260 consensus_8054#1 CCTGATCAATATTGTGTTTGCTTGTACAAGATGGTGGAATTGGGTTTTTAACTGGATGAT 793 ************************************************************ consensus_8054#0 GATTGATTTGTTGTTTCCTGTATAGAGAGAGGGATAGGTTGATTGATTTTTTCCCCCATG 1320 consensus_8054#1 GATTGATTTGTTGTTTCCTGTATAGAGAGAGGGATAGGTTGATTGATTTTTTCCCCCATG 853 ************************************************************ consensus_8054#0 GAGTGCTGGTTTTGTTTGTTTGATTTCAATCATATGCAGATAGTTGGGGCCTTGATGGTC 1380 consensus_8054#1 GAGTGCTGGTTTTGTTTGTTTGATTTCAATCATATGCAGATAGTTGGGGCCTTGATGGTC 913 ************************************************************ consensus_8054#0 AGAGATGCAGTTCTTGTTGAGATGCCTGTAATGGTTGCGTTTGTAAATTGTGTCCAAAGG 1440 consensus_8054#1 AGAGATGCAGTTCTTGTTGAGATGCCTGTAATGGTTGCGTTTGTAAATTGTGTCCAAAGG 973 ************************************************************ consensus_8054#0 GACAAAACAGTGTGCAGATTTTGGTTTCTTTTGGCCTTCGATCAAAAAAAAAAAAAN--- 1497 consensus_8054#1 GACAAAACAGTGTGCAGATTTTGGTTTCTTTTGGCCTTCGATCACTAGTTTTCAGGGTTT 1033 ******************************************** * * consensus_8054#0 ------------------------------------------------------------ consensus_8054#1 TTTCTTTATGTCCACTGCGAAATGGAGTGACAATATTGTGTAAGAACACAATAGCATTCA 1093 consensus_8054#0 ---------------- consensus_8054#1 GATTTCTGAGAACCTC 1109 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||