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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8054#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1497 fasta sequence
[AGTTTCCGAAATCCCCGATTCTTCTCCTTGTAGGAAAAGGCATTGACTTGCCCCTTCCTCCTTCGATCCGCGGTCTAGCCAGCTGGTTGCTGATTCGCTGCTTGTTCGGATTGATTCGATTCGTCGTCCATGGATCGTCGTGACGATTCTTGCTGCCCCGGCGGCGGCGGCGGCGTCTCATCTCTGATCGGAGAATTTGTTGGGGACGTGGTGATGTGGCGGCGGGGCGACGTGAGCGCCTGCCTGCTGGCGGCGACCGTCTCCGGCTGGCTGCTCTTCGGCTCCGGCGGCTACACCTTCCTCTCCCTCGCCTCCAACGTCCTCCTCCTCCTCCTCACCGTCCTCTTCCTCTGGGCCAAGGCCGCCCGCCTCCTCAACAGGAATGGAATTTCTGTTGGACTCTACTTTCCATTTTGGGATACAGATTTCAGTTGATAGTTAACCAATGGAAGGAACAATCCAGGCACTTAATTCTTATCATCATCACAGCTTTCACTGTTGTTTTGACATTCCTCCATCAATTTAATCATTATTACTTCAGTTAGAGGATTAGGTGGATGCTTTGAACTTTGACCAAATTTATGCTAATTGACAATCTAACAACCAGCCAGGTGATACTGATGTCAGATTAGGTACGTGCTGTAAACTATTTTAACTGAAATGCTAAGGGTAGACAATGATAAGCTTTGTCTTGCAAACAGCTTACTGTTTTTTACTTCAATCAGATGAGTGAATTGCTCATCGCTGTGGACATTTGGCAAATATTTTAAACGATGCTGGTTGTGTTGTGCAAACAAATGAGGTTGCAGGCCAGAGCCACCTATTCCAGAGATGCGCATTTCGCAGCAGGTTGTGAATGAAGTGGCAGCCCTGCTGCATTCTGGCATGAACACGGTCTTCTCTGTCTTCCATGACATCGCACTCGGGAAAGACTCGGTGCTATTTTATCAAGTCTT-CCTTAGCCTGTGGATCATTTCTATCATTGGCAGCCTGACTGATTTCACCACTTT-ATGTTACACAAGTATTGTTGCTGTTCTGACCATCCCTGCATTGTACCAGAAGTATGAGGAATGCATTGACAGATACATGAGGTTTGCGTATTTGAACCTGCAGATGTACGAGATGGTGTACGAGAGATTCTCTGCCAAGTGCTTCCACAGGGCTAGGGATTTGGTTATTGAGGTTCTGAAAGAGCCATGACCTGATCAATATTGTGTTTGCTTGTACAAGATGGTGGAATTGGGTTTTTAACTGGATGATGATTGATTTGTTGTTTCCTGTATAGAGAGAGGGATAGGTTGATTGATTTTTTCCCCCATGGAGTGCTGGTTTTGTTTGTTTGATTTCAATCATATGCAGATAGTTGGGGCCTTGATGGTCAGAGATGCAGTTCTTGTTGAGATGCCTGTAATGGTTGCGTTTGTAAATTGTGTCCAAAGGGACAAAACAGTGTGCAGATTTTGGTTTCTTTTGGCCTTCGATCAAAAAAAAAAAAAN]
[+] EMBL AK100139 [AGTTTCCGAAATCCCCGATTCTTCTCCTTGTAGGAAAAGGCATTGACTTGCCCCTTCCTCCTTCGATCCGCGGTCTAGCCAGCTGGTTGCTGATTCGCTGCTTGTTCGGATTGATTCGATTCGTCGTCCATGGATCGTCGTGACGATTCTTGCTGCCCCGGCGGCGGCGGCGGCGTCTCATCTCTGATCGGAGAATTTGTTGGGGACGTGGTGATGTGGCGGCGGGGCGACGTGAGCGCCTGCCTGCTGGCGGCGACCGTCTCCGGCTGGCTGCTCTTCGGCTCCGGCGGCTACACCTTCCTCTCCCTCGCCTCCAACGTCCTCCTCCTCCTCCTCACCGTCCTCTTCCTCTGGGCCAAGGCCGCCCGCCTCCTCAACAGGAATGGAATTTCTGTTGGACTCTACTTTCCATTTTGGGATACAGATTTCAGTTGATAGTTAACCAATGGAAGGAACAATCCAGGCACTTAATTCTTATCATCATCACAGCTTTCACTGTTGTTTTGACATTCCTCCATCAATTTAATCATTATTACTTCAGTTAGAGGATTAGGTGGATGCTTTGAACTTTGACCAAATTTATGCTAATTGACAATCTAACAACCAGCCAGGTGATACTGATGTCAGATTAGGTACGTGCTGTAAACTATTTTAACTGAAATGCTAAGGGTAGACAATGATAAGCTTTGTCTTGCAAACAGCTTACTGTTTTTTACTTCAATCAGATGAGTGAATTGCTCATCGCTGTGGACATTTGGCAAATATTTTAAACGATGCTGGTTGTGTTGTGCAAACAAATGAGGTTGCAGGCCAGAGCCACCTATTCCAGAGATGCGCATTTCGCAGCAGGTTGTGAATGAAGTGGCAGCCCTGCTGCATTCTGGCATGAACACGGTCTTCTCTGTCTTCCATGACATCGCACTCGGGAAAGACTCGGTGCTATTTTATCAAGTCTT CCTTAGCCTGTGGATCATTTCTATCATTGGCAGCCTGACTGATTTCACCACTTT ATGTTACACAAGTATTGTTGCTGTTCTGACCATCCCTGCATTGTACCAGAAGTATGAGGAATGCATTGACAGATACATGAGGTTTGCGTATTTGAACCTGCAGATGTACGAGATGGTGTACGAGAGATTCTCTGCCAAGTGCTTCCACAGGGCTAGGGATTTGGTTATTGAGGTTCTGAAAGAGCCATGACCTGATCAATATTGTGTTTGCTTGTACAAGATGGTGGAATTGGGTTTTTAACTGGATGATGATTGATTTGTTGTTTCCTGTATAGAGAGAGGGATAGGTTGATTGATTTTTTCCCCCATGGAGTGCTGGTTTTGTTTGTTTGATTTCAATCATATGCAGATAGTTGGGGCCTTGATGGTCAGAGATGCAGTTCTTGTTGAGATGCCTGTAATGGTTGCGTTTGTAAATTGTGTCCAAAGGGACAAAACAGTGTGCAGATTTTGGTTTCTTTTGGCCTTCGATC ]
[+] EMBL AU082733 [ ACTCGGTGCNATTTTATCAAGTCTTCCCTTANCCTGTGGATCATTTCTATCATTGGCAGCCTGACTGATTTCACCACTTTAATGTTACACAAGTATTGTTGCTGTTCTGACCATCCCTGCATTGTACCAGAAGTATGAGGAATGCATTGACAGATACATGAGGTTTGCGTATTTGAACCTGCAGATGTACGAGATGGTGTACGAGAGATTCTCTGCCAAGTGCTTCCACAGGGCTAGGGATTTGGTTATTGAGGNTCTGAAAGAGCCATGACCTGATCAATATTGTGTTTGCTTGTACAAGATGGTGGAATTGGGTTTTTAACTGGATGATGATTGATTTGTTGTTTCCTGTATAGAGAGAGGGATAGGTTGATTGATTTTTTCCCCCATGGAGTGCTGGTTTTGTTTGTTTGATTTCAATCATATGCAGATAGTTGGGGCCTTGATGGTCAGAGATGCAGTTCTTGTTGAGATGCCTGTAATGGTTGCGTTTGTAAATTGTGTCCAAAGGGACAAAACAGTGTGCAGATTTTGGTTTCTTTTGGCCTTCAAAAAAAAAAAAAAAAAN]
consensusID : consensus_8054#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1109 fasta sequence
[GGCATTGACTTGCCCCTTCCTCCTTCGATCCGCGGTCTAGCCAGCTGGTTGCTGATTCGCTGCTTGTTCGGATTGATTCGATTCGTCGTCCATGGATCGTCGTGACGATTCTTGCTGCCCCGGCGGCGGCGGCGGCGTCTCATCTCTGATCGGAGAATTTGTTGGGGACGTGGTGATGTGGCGGCGGGGCGACGTGAGCGCCTGCCTGCTGGCGGCGACCGTCTCCGGCTGGCTGCTCTTCGGCTCCGGCGGCTACACCTTCCTCTCCCTCGCCTCCAACGTCCTCCTCCTCCTCCTCACCGTCCTCTTCCTCTGGGCCAAGGCCGCCCGCCTCCTCAACAGGCCAGAGCCACCTATTCCAGAGATGCGCATTTCGCAGCAGGTTGTGAATGAAGTNGCAGCCCTGCTGCATTCTGGCATGAACACGGTCTTCTCTGTCTTCCATGACATCGCACTCGGGAAAGACTCGGTGCTATTTTATCAAGTCTTCCTTAGCCTGTGGATCATTTCTATCATTGGCAGCCTGACTGATTTCACCACTTTATGTTACACAAGTATTGTTGCTGTTCTGACCATCCCTGCATTGTACCAGAAGTATGAGGAATGCATTGACAGATACATGAGGTTTGCGTATTTGAACCTGCAGATGTACGAGATGGTGTACGAGAGATTCTCTGCCAAGTGCTTCCACAGGGCTAGGGATTTGGTTATTGAGGTTCTGAAAGAGCCATGACCTGATCAATATTGTGTTTGCTTGTACAAGATGGTGGAATTGGGTTTTTAACTGGATGATGATTGATTTGTTGTTTCCTGTATAGAGAGAGGGATAGGTTGATTGATTTTTTCCCCCATGGAGTGCTGGTTTTGTTTGTTTGATTTCAATCATATGCAGATAGTTGGGGCCTTGATGGTCAGAGATGCAGTTCTTGTTGAGATGCCTGTAATGGTTGCGTTTGTAAATTGTGTCCAAAGGGACAAAACAGTGTGCAGATTTTGGTTTCTTTTGGCCTTCGATCACTAGTTTTCAGGGTTTTTTCTTTATGTCCACTGCGAAATGGAGTGACAATATTGTGTAAGAACACAATAGCATTCAGATTTCTGAGAACCTC]
[+] EMBL AK061121 [GGCATTGACTTGCCCCTTCCTCCTTCGATCCGCGGTCTAGCCAGCTGGTTGCTGATTCGCTGCTTGTTCGGATTGATTCGATTCGTCGTCCATGGATCGTCGTGACGATTCTTGCTGCCCCGGCGGCGGCGGCGGCGTCTCATCTCTGATCGGAGAATTTGTTGGGGACGTGGTGATGTGGCGGCGGGGCGACGTGAGCGCCTGCCTGCTGGCGGCGACCGTCTCCGGCTGGCTGCTCTTCGGCTCCGGCGGCTACACCTTCCTCTCCCTCGCCTCCAACGTCCTCCTCCTCCTCCTCACCGTCCTCTTCCTCTGGGCCAAGGCCGCCCGCCTCCTCAACAGGCCAGAGCCACCTATTCCAGAGATGCGCATTTCGCAGCAGGTTGTGAATGAAGTGGCAGCCCTGCTGCATTCTGGCATGAACACGGTCTTCTCTGTCTTCCATGACATCGCACTCGGGAAAGACTCGGTGCTATTTTATCAAGTCTTCCTTAGCCTGTGGATCATTTCTATCATTGGCAGCCTGACTGATTTCACCACTTTATGTTACACAAGTATTGTTGCTGTTCTGACCATCCCTGCATTGTACCAGAAGTATGAGGAATGCATTGACAGATACATGAGGTTTGCGTATTTGAACCTGCAGATGTACGAGATGGTGTACGAGAGATTCTCTGCCAAGTGCTTCCACAGGGCTAGGGATTTGGTTATTGAGGTTCTGAAAGAGCCATGACCTGATCAATATTGTGTTTGCTTGTACAAGATGGTGGAATTGGGTTTTTAACTGGATGATGATTGATTTGTTGTTTCCTGTATAGAGAGAGGGATAGGTTGATTGATTTTTTCCCCCATGGAGTGCTGGTTTTGTTTGTTTGATTTCAATCATATGCAGATAGTTGGGGCCTTGATGGTCAGAGATGCAGTTCTTGTTGAGATGCCTGTAATGGTTGCGTTTGTAAATTGTGTCCAAAGGGACAAAACAGTGTGCAGATTTTGGTTTCTTTTGGCCTTCGATCACTAGTTTTCAGGGTTTTTTCTTTATGTCCACTGCGAAATGGAGTGACAATATTGTGTAAGAACACAATAGCATTCAGATTTCTGAGAACCTC]
[+] EMBL AY164902 [ AGCTGGTTGCTGATTCGCTGCTTGTTCGGATTGATTCGATTCGTCGTCCATGGATCGTCGTGACGATTCTTGCTGCCCCGGCGGCGGCGGCGGCGTCTCATCTCTGATCGGAGAATTTGTTGGGGACGTGGTGATGTGGCGGCGGGGCGACGTGAGCGCCTGCCTGCTGGCGGCGACCGTCTCCGGCTGGCTGCTCTTCGGCTCCGGCGGCTACACCTTCCTCTCCCTCGCCTCCAACGTCCTCCTCCTCCTCCTCACCGTCCTCTTCCTCTGGGCCAAGGCCGCCCGCCTCCTCAACAGGCCAGAGCCACCTATTCCAGAGATGCGCATTTCGCAGCAGGTTGTGAATGAAGTNGCAGCCCTGCTGCATTCTGGCATGAACACGGTCTTCTCTGTCTTCCATGACATCGCACTCGGGAAAGACTCGGTGCTATTTTATCAAGT ]
[+] EMBL AU082732 [ AGCTGGTTGCTGATTCGCTGCTTGTTCGGATTGATTCGATTCGTCGTCCATGGATCGTCGTGACGATTCTTGCTGCCCCGGCGGCGGCGGCGGCGTCTCATCTCTGATCGGAGAATTTGTTGGGGACGTGGTGATGTGGCGGCGGGGCGACGTGAGCGCCTGCCTGCTGGCGGCGACCGTCTCCGGCTGGCTGCTCTTCGGCTCCGGCGGCTACACCTTCCTCTCCCTCGCCTCCAACGTCCTCCTCCTCCTCCTCACCGTCCTCTTCCTCTGGGCCAAGGCCGCCCGCCTCCTCAACAGGCCAGAGCCACCTATTCCAGAGATGCGCATTTCGCAGCAGGTTGTGAATGAAGTNGCAGCCCTGCTGCATTCTGGCATGAACACGGTCTTCTCTGTCTTCCATGACATCGCACTCGGGAAAGACTCGGTGCTATTTTATCAAGT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8054#0 AGTTTCCGAAATCCCCGATTCTTCTCCTTGTAGGAAAAGGCATTGACTTGCCCCTTCCTC 60
consensus_8054#1 --------------------------------------GGCATTGACTTGCCCCTTCCTC 22
**********************
consensus_8054#0 CTTCGATCCGCGGTCTAGCCAGCTGGTTGCTGATTCGCTGCTTGTTCGGATTGATTCGAT 120
consensus_8054#1 CTTCGATCCGCGGTCTAGCCAGCTGGTTGCTGATTCGCTGCTTGTTCGGATTGATTCGAT 82
************************************************************
consensus_8054#0 TCGTCGTCCATGGATCGTCGTGACGATTCTTGCTGCCCCGGCGGCGGCGGCGGCGTCTCA 180
consensus_8054#1 TCGTCGTCCATGGATCGTCGTGACGATTCTTGCTGCCCCGGCGGCGGCGGCGGCGTCTCA 142
************************************************************
consensus_8054#0 TCTCTGATCGGAGAATTTGTTGGGGACGTGGTGATGTGGCGGCGGGGCGACGTGAGCGCC 240
consensus_8054#1 TCTCTGATCGGAGAATTTGTTGGGGACGTGGTGATGTGGCGGCGGGGCGACGTGAGCGCC 202
************************************************************
consensus_8054#0 TGCCTGCTGGCGGCGACCGTCTCCGGCTGGCTGCTCTTCGGCTCCGGCGGCTACACCTTC 300
consensus_8054#1 TGCCTGCTGGCGGCGACCGTCTCCGGCTGGCTGCTCTTCGGCTCCGGCGGCTACACCTTC 262
************************************************************
consensus_8054#0 CTCTCCCTCGCCTCCAACGTCCTCCTCCTCCTCCTCACCGTCCTCTTCCTCTGGGCCAAG 360
consensus_8054#1 CTCTCCCTCGCCTCCAACGTCCTCCTCCTCCTCCTCACCGTCCTCTTCCTCTGGGCCAAG 322
************************************************************
consensus_8054#0 GCCGCCCGCCTCCTCAACAGGAATGGAATTTCTGTTGGACTCTACTTTCCATTTTGGGAT 420
consensus_8054#1 GCCGCCCGCCTCCTCAACAGG--------------------------------------- 343
*********************
consensus_8054#0 ACAGATTTCAGTTGATAGTTAACCAATGGAAGGAACAATCCAGGCACTTAATTCTTATCA 480
consensus_8054#1 ------------------------------------------------------------
consensus_8054#0 TCATCACAGCTTTCACTGTTGTTTTGACATTCCTCCATCAATTTAATCATTATTACTTCA 540
consensus_8054#1 ------------------------------------------------------------
consensus_8054#0 GTTAGAGGATTAGGTGGATGCTTTGAACTTTGACCAAATTTATGCTAATTGACAATCTAA 600
consensus_8054#1 ------------------------------------------------------------
consensus_8054#0 CAACCAGCCAGGTGATACTGATGTCAGATTAGGTACGTGCTGTAAACTATTTTAACTGAA 660
consensus_8054#1 ------------------------------------------------------------
consensus_8054#0 ATGCTAAGGGTAGACAATGATAAGCTTTGTCTTGCAAACAGCTTACTGTTTTTTACTTCA 720
consensus_8054#1 ------------------------------------------------------------
consensus_8054#0 ATCAGATGAGTGAATTGCTCATCGCTGTGGACATTTGGCAAATATTTTAAACGATGCTGG 780
consensus_8054#1 ------------------------------------------------------------
consensus_8054#0 TTGTGTTGTGCAAACAAATGAGGTTGCAGGCCAGAGCCACCTATTCCAGAGATGCGCATT 840
consensus_8054#1 ------------------------------CCAGAGCCACCTATTCCAGAGATGCGCATT 373
******************************
consensus_8054#0 TCGCAGCAGGTTGTGAATGAAGTGGCAGCCCTGCTGCATTCTGGCATGAACACGGTCTTC 900
consensus_8054#1 TCGCAGCAGGTTGTGAATGAAGTNGCAGCCCTGCTGCATTCTGGCATGAACACGGTCTTC 433
*********************** ************************************
consensus_8054#0 TCTGTCTTCCATGACATCGCACTCGGGAAAGACTCGGTGCTATTTTATCAAGTCTTCCTT 960
consensus_8054#1 TCTGTCTTCCATGACATCGCACTCGGGAAAGACTCGGTGCTATTTTATCAAGTCTTCCTT 493
************************************************************
consensus_8054#0 AGCCTGTGGATCATTTCTATCATTGGCAGCCTGACTGATTTCACCACTTTATGTTACACA 1020
consensus_8054#1 AGCCTGTGGATCATTTCTATCATTGGCAGCCTGACTGATTTCACCACTTTATGTTACACA 553
************************************************************
consensus_8054#0 AGTATTGTTGCTGTTCTGACCATCCCTGCATTGTACCAGAAGTATGAGGAATGCATTGAC 1080
consensus_8054#1 AGTATTGTTGCTGTTCTGACCATCCCTGCATTGTACCAGAAGTATGAGGAATGCATTGAC 613
************************************************************
consensus_8054#0 AGATACATGAGGTTTGCGTATTTGAACCTGCAGATGTACGAGATGGTGTACGAGAGATTC 1140
consensus_8054#1 AGATACATGAGGTTTGCGTATTTGAACCTGCAGATGTACGAGATGGTGTACGAGAGATTC 673
************************************************************
consensus_8054#0 TCTGCCAAGTGCTTCCACAGGGCTAGGGATTTGGTTATTGAGGTTCTGAAAGAGCCATGA 1200
consensus_8054#1 TCTGCCAAGTGCTTCCACAGGGCTAGGGATTTGGTTATTGAGGTTCTGAAAGAGCCATGA 733
************************************************************
consensus_8054#0 CCTGATCAATATTGTGTTTGCTTGTACAAGATGGTGGAATTGGGTTTTTAACTGGATGAT 1260
consensus_8054#1 CCTGATCAATATTGTGTTTGCTTGTACAAGATGGTGGAATTGGGTTTTTAACTGGATGAT 793
************************************************************
consensus_8054#0 GATTGATTTGTTGTTTCCTGTATAGAGAGAGGGATAGGTTGATTGATTTTTTCCCCCATG 1320
consensus_8054#1 GATTGATTTGTTGTTTCCTGTATAGAGAGAGGGATAGGTTGATTGATTTTTTCCCCCATG 853
************************************************************
consensus_8054#0 GAGTGCTGGTTTTGTTTGTTTGATTTCAATCATATGCAGATAGTTGGGGCCTTGATGGTC 1380
consensus_8054#1 GAGTGCTGGTTTTGTTTGTTTGATTTCAATCATATGCAGATAGTTGGGGCCTTGATGGTC 913
************************************************************
consensus_8054#0 AGAGATGCAGTTCTTGTTGAGATGCCTGTAATGGTTGCGTTTGTAAATTGTGTCCAAAGG 1440
consensus_8054#1 AGAGATGCAGTTCTTGTTGAGATGCCTGTAATGGTTGCGTTTGTAAATTGTGTCCAAAGG 973
************************************************************
consensus_8054#0 GACAAAACAGTGTGCAGATTTTGGTTTCTTTTGGCCTTCGATCAAAAAAAAAAAAAN--- 1497
consensus_8054#1 GACAAAACAGTGTGCAGATTTTGGTTTCTTTTGGCCTTCGATCACTAGTTTTCAGGGTTT 1033
******************************************** * *
consensus_8054#0 ------------------------------------------------------------
consensus_8054#1 TTTCTTTATGTCCACTGCGAAATGGAGTGACAATATTGTGTAAGAACACAATAGCATTCA 1093
consensus_8054#0 ----------------
consensus_8054#1 GATTTCTGAGAACCTC 1109
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||