cluster # 806

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Oryza sativa
cluster # 806 cluster # 806 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_806#0 length = 1043 sequences # 1

consensus_806#1 length = 606 sequences # 1

consensusID : consensus_806#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1043
fasta sequence

                              [CTGCAGCAAATAAACCTCATTTGACAGATCTGTCTAGTGATGAGTCTGAGTTGGAATCTTCTGATGAGGATGTTGATAAAAGGAAAGTTAAGCGCACAAAGCATGAAGCTATTGTTGGTCCTGCAGTTGATAAAAGTATTGCTCATGAAGCAGTCGGGGTGAAACCTGCTGCATTAGTTTCTAGTGAGCTTCAAGTGATAAAAAAGAAAAATCCAGTTCTGCAGATTAATATTGCCCCAAAGGCTGCACAGAAGGAGCTTACTGTTCAAAGTACTACTGACAAAGAATTGGTGCCAACAGCTGAACAACTTCAAGGAAAACATTTTGTCACACCTCAGGATATAGAAAAAGAGAAATTGGCGCCAGAGGAGATTTTGTCCCTTCCTATGTTCAAGAATTACACACCAGGGAATCCTGCCAGTGTGTTATACATAAAAAACTTGGCAAAGGATGTCATTCAGGATGACTTCTACTATGTCTTTGGGTCTGTTTTTGAAAACATGGACATTGCACGATCTAGTCTGAGCATCAAACTAATGCAGGAGGGGCGGATGCGGGGCCAAGCTTTTGTGACATTTCCATCGGTTGAACTTGCTCAACGCGCACTGAATCTTGTACATGGTTTTGTGTTCAAAGGCAAACCAATGATTATACAGTTTGGCAGAAACCCTGCGGCTAACAAATCTTCCTAGGAGGGTTGCATTCTTTCAGATACTGAATGCACTTTTAAGTCAATAGGGACTAGCAAATGGAGACCAAAACTCCTGAGTATTTCTTCAGGAACTGGGCGCATGTACACTGTACAGAAGAGTGAAGATTGTAGATTGTGGGCTGAAGAGCATCCTCGTTCAATATGGTGCAAGATAAACTTGTACAGAACCTTGTAGCGGTTCTGTTCTGCGGTCTGAAAATGTTGGGTTTGGAAACAATTGAGGCCTATGTAATGTGGCATTTATTTACTGAATTCGGTGGGAACTGAACTGATTCATACATTAAGAGATTCCTGCGCGAGGTGTGAACTACTCGAATTTATTAAGAGTAGC]

[+] EMBL AK107632             [CTGCAGCAAATAAACCTCATTTGACAGATCTGTCTAGTGATGAGTCTGAGTTGGAATCTTCTGATGAGGATGTTGATAAAAGGAAAGTTAAGCGCACAAAGCATGAAGCTATTGTTGGTCCTGCAGTTGATAAAAGTATTGCTCATGAAGCAGTCGGGGTGAAACCTGCTGCATTAGTTTCTAGTGAGCTTCAAGTGATAAAAAAGAAAAATCCAGTTCTGCAGATTAATATTGCCCCAAAGGCTGCACAGAAGGAGCTTACTGTTCAAAGTACTACTGACAAAGAATTGGTGCCAACAGCTGAACAACTTCAAGGAAAACATTTTGTCACACCTCAGGATATAGAAAAAGAGAAATTGGCGCCAGAGGAGATTTTGTCCCTTCCTATGTTCAAGAATTACACACCAGGGAATCCTGCCAGTGTGTTATACATAAAAAACTTGGCAAAGGATGTCATTCAGGATGACTTCTACTATGTCTTTGGGTCTGTTTTTGAAAACATGGACATTGCACGATCTAGTCTGAGCATCAAACTAATGCAGGAGGGGCGGATGCGGGGCCAAGCTTTTGTGACATTTCCATCGGTTGAACTTGCTCAACGCGCACTGAATCTTGTACATGGTTTTGTGTTCAAAGGCAAACCAATGATTATACAGTTTGGCAGAAACCCTGCGGCTAACAAATCTTCCTAGGAGGGTTGCATTCTTTCAGATACTGAATGCACTTTTAAGTCAATAGGGACTAGCAAATGGAGACCAAAACTCCTGAGTATTTCTTCAGGAACTGGGCGCATGTACACTGTACAGAAGAGTGAAGATTGTAGATTGTGGGCTGAAGAGCATCCTCGTTCAATATGGTGCAAGATAAACTTGTACAGAACCTTGTAGCGGTTCTGTTCTGCGGTCTGAAAATGTTGGGTTTGGAAACAATTGAGGCCTATGTAATGTGGCATTTATTTACTGAATTCGGTGGGAACTGAACTGATTCATACATTAAGAGATTCCTGCGCGAGGTGTGAACTACTCGAATTTATTAAGAGTAGC]




>consensus_806#0
CTGCAGCAAATAAACCTCATTTGACAGATCTGTCTAGTGATGAGTCTGAGTTGGAATCTT
CTGATGAGGATGTTGATAAAAGGAAAGTTAAGCGCACAAAGCATGAAGCTATTGTTGGTC
CTGCAGTTGATAAAAGTATTGCTCATGAAGCAGTCGGGGTGAAACCTGCTGCATTAGTTT
CTAGTGAGCTTCAAGTGATAAAAAAGAAAAATCCAGTTCTGCAGATTAATATTGCCCCAA
AGGCTGCACAGAAGGAGCTTACTGTTCAAAGTACTACTGACAAAGAATTGGTGCCAACAG
CTGAACAACTTCAAGGAAAACATTTTGTCACACCTCAGGATATAGAAAAAGAGAAATTGG
CGCCAGAGGAGATTTTGTCCCTTCCTATGTTCAAGAATTACACACCAGGGAATCCTGCCA
GTGTGTTATACATAAAAAACTTGGCAAAGGATGTCATTCAGGATGACTTCTACTATGTCT
TTGGGTCTGTTTTTGAAAACATGGACATTGCACGATCTAGTCTGAGCATCAAACTAATGC
AGGAGGGGCGGATGCGGGGCCAAGCTTTTGTGACATTTCCATCGGTTGAACTTGCTCAAC
GCGCACTGAATCTTGTACATGGTTTTGTGTTCAAAGGCAAACCAATGATTATACAGTTTG
GCAGAAACCCTGCGGCTAACAAATCTTCCTAGGAGGGTTGCATTCTTTCAGATACTGAAT
GCACTTTTAAGTCAATAGGGACTAGCAAATGGAGACCAAAACTCCTGAGTATTTCTTCAG
GAACTGGGCGCATGTACACTGTACAGAAGAGTGAAGATTGTAGATTGTGGGCTGAAGAGC
ATCCTCGTTCAATATGGTGCAAGATAAACTTGTACAGAACCTTGTAGCGGTTCTGTTCTG
CGGTCTGAAAATGTTGGGTTTGGAAACAATTGAGGCCTATGTAATGTGGCATTTATTTAC
TGAATTCGGTGGGAACTGAACTGATTCATACATTAAGAGATTCCTGCGCGAGGTGTGAAC
TACTCGAATTTATTAAGAGTAGC

consensusID : consensus_806#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 606
fasta sequence

                              [GCGAGACAACCGGATGTCGNGAAGGGTTTTCGGACACAAATGAAAAAACTAATTTTAGAACTCGCCTGGAAACCGCGAGACGAATCTTTTGAGACTAATTAAGCCGTCATTAGCACATGTGGGTTACTGTAGCACTTAATGGCTAATCACGGACTAATTAGGCTTAAAAGATTCGTCTCGCTATTTCCCCATAACTGTGCAATTAGTTTTTCTTTTNATCTATATTTAATGCTTCATGCATGTGTCTAAAGATTCGATGCGATATTTTTGGGGAACTAAACGGGCCCTAAATGGTAAGATATGTGGAAGGAACTGGGCGCATGTACACTGTACAGAAGAGTGAAGATTGTAGTGTGGGCTGAAGAGCATCCTCGTTCATATATGGTGCAAGATAAACTTGTACAGAACCTTGTAGCGGTTCTGTTTTGCGGTCTGAAAATGTTGGGTTTGGAAACAATTGAGGCCTATGTAATGTGGCATTTATTTACTGAATTCGGTGGGAACTGAACTGATTCATACATTAAGAGATTCCTGCGCGAGGTGTGAACTACTCGAATTTATTAAGAGTAGCAATCTAGTCGAAACTCTTGTTTTAAAAAAAAAAAA]

[-] EMBL CA761085             [GCGAGACAACCGGATGTCGNGAAGGGTTTTCGGACACAAATGAAAAAACTAATTTTAGAACTCGCCTGGAAACCGCGAGACGAATCTTTTGAGACTAATTAAGCCGTCATTAGCACATGTGGGTTACTGTAGCACTTAATGGCTAATCACGGACTAATTAGGCTTAAAAGATTCGTCTCGCTATTTCCCCATAACTGTGCAATTAGTTTTTCTTTTNATCTATATTTAATGCTTCATGCATGTGTCTAAAGATTCGATGCGATATTTTTGGGGAACTAAACGGGCCCTAAATGGTAAGATATGTGGAAGGAACTGGGCGCATGTACACTGTACAGAAGAGTGAAGATTGTAGTGTGGGCTGAAGAGCATCCTCGTTCATATATGGTGCAAGATAAACTTGTACAGAACCTTGTAGCGGTTCTGTTTTGCGGTCTGAAAATGTTGGGTTTGGAAACAATTGAGGCCTATGTAATGTGGCATTTATTTACTGAATTCGGTGGGAACTGAACTGATTCATACATTAAGAGATTCCTGCGCGAGGTGTGAACTACTCGAATTTATTAAGAGTAGCAATCTAGTCGAAACTCTTGTTTTAAAAAAAAAAAA]




>consensus_806#1
GCGAGACAACCGGATGTCGNGAAGGGTTTTCGGACACAAATGAAAAAACTAATTTTAGAA
CTCGCCTGGAAACCGCGAGACGAATCTTTTGAGACTAATTAAGCCGTCATTAGCACATGT
GGGTTACTGTAGCACTTAATGGCTAATCACGGACTAATTAGGCTTAAAAGATTCGTCTCG
CTATTTCCCCATAACTGTGCAATTAGTTTTTCTTTTNATCTATATTTAATGCTTCATGCA
TGTGTCTAAAGATTCGATGCGATATTTTTGGGGAACTAAACGGGCCCTAAATGGTAAGAT
ATGTGGAAGGAACTGGGCGCATGTACACTGTACAGAAGAGTGAAGATTGTAGTGTGGGCT
GAAGAGCATCCTCGTTCATATATGGTGCAAGATAAACTTGTACAGAACCTTGTAGCGGTT
CTGTTTTGCGGTCTGAAAATGTTGGGTTTGGAAACAATTGAGGCCTATGTAATGTGGCAT
TTATTTACTGAATTCGGTGGGAACTGAACTGATTCATACATTAAGAGATTCCTGCGCGAG
GTGTGAACTACTCGAATTTATTAAGAGTAGCAATCTAGTCGAAACTCTTGTTTTAAAAAA
AAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_806#0      CTGCAGCAAATAAACCTCATTTGACAGATCTGTCTAGTGATGAGTCTGAGTTGGAATCTT 60
consensus_806#1      ------------------------------------------------------------
                                                                                 

consensus_806#0      CTGATGAGGATGTTGATAAAAGGAAAGTTAAGCGCACAAAGCATGAAGCTATTGTTGGTC 120
consensus_806#1      ------------------------------------------------------------
                                                                                 

consensus_806#0      CTGCAGTTGATAAAAGTATTGCTCATGAAGCAGTCGGGGTGAAACCTGCTGCATTAGTTT 180
consensus_806#1      ------------------------------------------------------------
                                                                                 

consensus_806#0      CTAGTGAGCTTCAAGTGATAAAAAAGAAAAATCCAGTTCTGCAGATTAATATTGCCCCAA 240
consensus_806#1      ------------------------------------------------------------
                                                                                 

consensus_806#0      AGGCTGCACAGAAGGAGCTTACTGTTCAAAGTACTACTGACAAAGAATTGGTGCCAACAG 300
consensus_806#1      ------------------------------------------------------------
                                                                                 

consensus_806#0      CTGAACAACTTCAAGGAAAACATTTTGTCACACCTCAGGATATAGAAAAAGAGAAATTGG 360
consensus_806#1      ------------------------------------------------------------
                                                                                 

consensus_806#0      CGCCAGAGGAGATTTTGTCCCTTCCTATGTTCAAGAATTACACACCAGGGAATCCTGCCA 420
consensus_806#1      ------------------------------------------------------------
                                                                                 

consensus_806#0      GTGTGTTATACATAAAAAACTTGGCAAAGGATGTCATTCAGGATGACTTCTACTATGTCT 480
consensus_806#1      ------------------------------------------GCGAGA-CAACCGGATGT 17
                                                                 **   * **    * *

consensus_806#0      TTGGGTCTGTTTTTGAAAACATGGACATTGCACGATCTAGTCTGAGCATCAAACTAATGC 540
consensus_806#1      CGNGAAGGGTTTTCGGACACA-----AATGAAAAAACTAATTTTAGAACTCGCCTGGAAA 72
                        *    ***** * * ***     * ** *  * *** * * ** *     **     

consensus_806#0      AGGAGGGGCGGATGCG--GGGCCAAGCTTTTGTGACATTTCCATCGGTTGAACTTGCTCA 598
consensus_806#1      CCGCGAGACGAATCTTTTGAGACTAATTAAGCCGTCATTAGCACATGTGGG--TTACTGT 130
                       * * * ** **     * * * *  *     * ****  **   ** *   ** **  

consensus_806#0      ACGCGCACTGAATC-TTGTACATGGTTTTGTGTTCAAAGGCAAACCAATGATTATACAGT 657
consensus_806#1      A---GCACTTAATGGCTAATCACGGACTAA---TTAGGCTTAAAAGATTCGTCTCGCTAT 184
                     *   ***** ***   *   ** **  *     * *     ***  * *  *    *  *

consensus_806#0      TTGGCAGAAACCCTGCGGCTAACAAATCTTCCTAGGAGGGTTGCATTCTTTCAGATACTG 717
consensus_806#1      TTCCCCATAACTGTGCAATTAGTTTTTCTTTTNATCTATATTTAATGCTTCATGCATGTG 244
                     **  *   ***  ***   **     ****   *      **  ** ***   *    **

consensus_806#0      AATGCACTTTTAAGTCAATAGGGACTAGCAAATGGA--GACCAAAACTCCTGAGTATTTC 775
consensus_806#1      TCTAAAGATTCGATGCGATATTTTTGGGGAACTAAACGGGCCCTAAATGGTAAGATATGT 304
                       *  *  **  *  * ***       * ** *  *  * **  ** *  * **   *  

consensus_806#0      TTCAGGAACTGGGCGCATGTACACTGTACAGAAGAGTGAAGATTGTAGATTGTGGGCTGA 835
consensus_806#1      GGAAGGAACTGGGCGCATGTACACTGTACAGAAGAGTGAAGATTGTAG--TGTGGGCTGA 362
                        *********************************************  **********

consensus_806#0      AGAGCATCCTCGTTCA-ATATGGTGCAAGATAAACTTGTACAGAACCTTGTAGCGGTTCT 894
consensus_806#1      AGAGCATCCTCGTTCATATATGGTGCAAGATAAACTTGTACAGAACCTTGTAGCGGTTCT 422
                     **************** *******************************************

consensus_806#0      GTTCTGCGGTCTGAAAATGTTGGGTTTGGAAACAATTGAGGCCTATGTAATGTGGCATTT 954
consensus_806#1      GTTTTGCGGTCTGAAAATGTTGGGTTTGGAAACAATTGAGGCCTATGTAATGTGGCATTT 482
                     *** ********************************************************

consensus_806#0      ATTTACTGAATTCGGTGGGAACTGAACTGATTCATACATTAAGAGATTCCTGCGCGAGGT 1014
consensus_806#1      ATTTACTGAATTCGGTGGGAACTGAACTGATTCATACATTAAGAGATTCCTGCGCGAGGT 542
                     ************************************************************

consensus_806#0      GTGAACTACTCGAATTTATTAAGAGTAGC------------------------------- 1043
consensus_806#1      GTGAACTACTCGAATTTATTAAGAGTAGCAATCTAGTCGAAACTCTTGTTTTAAAAAAAA 602
                     *****************************                               

consensus_806#0      ----
consensus_806#1      AAAA 606