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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8061#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1099 fasta sequence
[GTTGAGTCGAGTCTGAGCCACCGCCGGAGGAGAGGAGGGGGGCCGAGCGGCGGAGGCGCGCAAGGGTTTGGGAGCCGCCGCCGGCGACCTTGGCCGGAGCGCAAAAGACTGAGGAGGCGTGGTCGGGGCTTGCCTGCTGCCGGCGGCCGGCGACCGGCGACCAACGGCCAGGACAGCTTGTGCTTATACTGTCCTGATGGAAACCGACAGAAGCCAGCCTGCTCCAATTGACCCAAGAAGAGCTCGCTTTCCTTGTTGTATAGTATGGACACCATTACCGTTAATCTCATGGTTGATCCCCTTTATCGGTCACATTGGCATCTGCAGAGAAGATGGTGTAATTTTGGATTTTGCTGGGCCCAATTTTGTATCAGTTGATAACTTCGCGTTTGGAGCAGTTGCACGATATATTCAAGTAAACAGTGATGAGTGCTATAAGCTTCTTGAACCTGAAGGAGCATCAACATGGGATGACGCGCTGAGGAAAGGCGTGCAGGAGTTCCAGCACAGGGGCTACAGCCTGTTCACCTGCAACTGCCACTCCTTCGTCGTGAACAATCTGAACCGTCTGTTCTACTCCGGCCATGACAAATGGAATGTGGTCAGCCTCGCTGCTGTGATGTTCTTACGGGGTCGCTGGGTGAGCACAGCGTCGGTGGTGAAGACTTTTTTCCCATTTGCACTGGTGATCACCATCGGCACTCTCCTTGGCGGCGCGACATTCCTGATCGGCTTGCTTGCTTTCGCTGCGGTGATGACTGGCTGGTTCCTTGTGGGCACCTACTGCATCAAGAGCCTTGTAGAGTTGTAGCTGGAGTAGTATATTGGATTGTACTTGGTTTTGGGTCTCCTTGTGATCAAAGGGTGCATACTTCTAATTTTTATAGTTGCTTGTAAGGTTTATTTTTGACTGGAGAGATCTATGAACTGGAATATAATTTGTAGCTTGATGAACTGGTCATCGATCCAGACGGTTAATTCTTGACTGGAGAGACCTATGAACTGCAATAGAATTTGTGGTTTGATGAACTGCTCATCAATCCAGATGGTTGCGGCAAAAAAAAAAAAAAAAAAAAAACCTCGTGCCGAATTCGGCACG]
[+] EMBL AK071709 [GTTGAGTCGAGTCTGAGCCACCGCCGGAGGAGAGGAGGGGGGCCGAGCGGCGGAGGCGCGCAAGGGTTTGGGAGCCGCCGCCGGCGACCTTGGCCGGAGCGCAAAAGACTGAGGAGGCGTGGTCGGGGCTTGCCTGCTGCCGGCGGCCGGCGACCGGCGACCAACGGCCAGGACAGCTTGTGCTTATACTGTCCTGATGGAAACCGACAGAAGCCAGCCTGCTCCAATTGACCCAAGAAGAGCTCGCTTTCCTTGTTGTATAGTATGGACACCATTACCGTTAATCTCATGGTTGATCCCCTTTATCGGTCACATTGGCATCTGCAGAGAAGATGGTGTAATTTTGGATTTTGCTGGGCCCAATTTTGTATCAGTTGATAACTTCGCGTTTGGAGCAGTTGCACGATATATTCAAGTAAACAGTGATGAGTGCTATAAGCTTCTTGAACCTGAAGGAGCATCAACATGGGATGACGCGCTGAGGAAAGGCGTGCAGGAGTTCCAGCACAGGGGCTACAGCCTGTTCACCTGCAACTGCCACTCCTTCGTCGTGAACAACCTGAACCGTCTGTTCTACTCCGGCCATGACAAATGGAATGTGGTCAGCCTCGCTGCTGTGATGTTCTTACGGGGTCGCTGGGTGAGCACAGCGTCGGTGGTGAAGACTTTTTTCCCATTTGCACTGGTGATCACCATCGGCACTCTCCTTGGCGGCGCGACATTCCTGATCGGCTTGCTTGCTTTCGCTGCGGTGATGACTGGCTGGTTCCTTGTGGGCACCTACTGCATCAAGAGCCTTGTAGAGTTGTAGCTGGAGTAGTATATTGGATTGTACTTGGTTTTGGGTCTCCTTGTGATCAAAGGGTGCATACTTCTAATTTTTATAGTTGCTTGTAAGGTTTATTTTTGACTGGAGAGATCTATGAACTGGAATATAATTTGTAGCTTGATGAACTGGTCATCGAT ]
[+] EMBL CB001026 [ TTCACCTGCAACTGCCACTCCTTCGTCGTGAACAATCTGAACCGTCTGTTCTACTCCGGCCATGACAAATGGAATGTGGTCAGCCTCGCTGCTGTGATGTTCTTACGGGGTCGCTGGGTGAGCACAGCGTCGGTGGTGAAGACTTTTTTCCCATTTGCACTGGTGATCACCATCGGCACTCTCCTTGGCGGCGCGACATTCCTGATCGGCTTGCTTGCTTTCGCTGCGGTGATGACTGGCTGGTTCCTTGTGGGCACCTACTGCATC ]
[-] EMBL BE230687 [ tggtgcCGTG ACAATTTGAACCGTTTGTTTTACTCCGCCCATG CAAATGAAATGTGGTCAGCCTCGCTGCTGT ATG TCTT CGGGGTCGCTGGGTGAG TCAGCGTCGGTGGTGAAGACTTTTTTCCCATTTGCACTGGTGATCACCATCGGCACTCTCCTTGGCGGCGCGACATTCCTGATCGGCTTGCTTGCTTTCGCTGCGGTGATGACTGGCTGGTTCCTTGTGGGCACCTACTGCATCAAGAGCCTTGTAGAGTTGTAGCTGGAGTAGTATATTGGATTGTACTTGGTTTTGGGTCTCCTTGTGATCAAAGGGTGCATACTTCTAATTTTTATAGTTGCTTGTAAGGTTTATTTTTGACTGGAGAGATCTATGAACTGGAATATAATTTGTAGCTTGATGAACTGGTCATCGATCCAGACGGTTAATTCTTGACTGGAGAGACCTATGAACTGCAATAGAATTTGTGGTTTGATGAACTGCTCATCAATCCAGATGGTTGCGGCAAAAAAAAAAAA ]
[-] EMBL BE229893 [ ATGCCAAAT GAATG GG CAGCCTCGCTGCTGTGATGTTCTTACGGGGTCGCTGGGTGAGTACAGCGTCGGTGGTGAAGACTTTTTTCCCATTTGCACTGGTGATCACCATCGGCACTCTCCTTGGCGGCGCGACATTCCTGATCGGCTTGCTTGCTTTCGCTGCGGTGATGACTGGCTGGTTCCTTGTGGGCACCTACTGCATCAAGAGCCTTGTAGAGTTGTAGCTGGAGTAGTATATTGGATTGTACTTGGTTTTGGGTCTCCTTGTGATCAAAGGGTGCATACTTCTAATTTTTATAGTTGCTTGTAAGGTTTATTTTTGACTGGAGAGATCTATGAACTGGAATATAATTTGTAGCTTGATGAACTGGTCATCGATCCAGACGGTTAATTCTTGACTGGAGAGACCTATGAACTGCAATAGAATTTGTGGTTTGATGAACTGCTCATCAATCCAGATGGTTGCGGCAAAAAAAAAAAAAAAAAAAAAACCTCGTGCCGAATTCGGCACG]
consensusID : consensus_8061#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 690 fasta sequence
[CTGGGCCCAATTTTGTATCAGTTGATAACTTCGCGTTTGGAGCAGTTGCCCGATATATTCAAGTAAACAGTGATGAGTGCTATAAGCTTCCTGAACCTGAAGGAGCATCAACATGGGATGACGCGCTGAGGAAAGGCGTGCAGGAGTTCCAGCACAGGGGCTACAGCCTGTTCACCTGCAACTGTCACTCCTTTGTCGTGAACAATTTGAACCGTCTGTTTTACTCCGGCCATGACAAATGGAATGTGGTCAGCCTCGCTGCTGTGATGTTCTTACGGGGTCGCTGGGTGAGTACAGCGTCGGTGGTGAAGACTTTTTTCCCATTTGCCCTGGTAATCACCATCGGCACTCTCCTTGGCGGCGCGACATTCCTAATCGGCTTGCTTGCTTTCGCTGCGGTGATGACTGGCTGGTTCCTTGTGGGCACCTACTGCATCAAGAGCCTTGTAGAGTTGTAGCTGGAGTAGTATATTGGATTGTACTTGGTTTTGGGTCTCCTTGTGATCAAAGGGTGCATACTTCTAATTTTTATAGTTGCTTGTAAGGTTTATTTTTGACTGGAGAGATCTATGAACTAGAATATAATTTGTAGCTTGATGAACTGGTCATCGATCCAGACGGTTAATTTTTGACTGGAGAGACCTATGAACTGCAATAGAATTTGTGGTTTGATGAAAAAAAAAAAAAAAA]
[-] EMBL CA759829 [CTGGGCCCAATTTTGTATCAGTTGATAACTTCGCGTTTGGAGCAGTTGCCCGATATATTCAAGTAAACAGTGATGAGTGCTATAAGCTTCCTGAACCTGAAGGAGCATCAACATGGGATGACGCGCTGAGGAAAGGCGTGCAGGAGTTCCAGCACAGGGGCTACAGCCTGTTCACCTGCAACTGTCACTCCTTTGTCGTGAACAATTTGAACCGTCTGTTTTACTCCGGCCATGACAAATGGAATGTGGTCAGCCTCGCTGCTGTGATGTTCTTACGGGGTCGCTGGGTGAGTACAGCGTCGGTGGTGAAGACTTTTTTCCCATTTGCCCTGGTAATCACCATCGGCACTCTCCTTGGCGGCGCGACATTCCTAATCGGCTTGCTTGCTTTCGCTGCGGTGATGACTGGCTGGTTCCTTGTGGGCACCTACTGCATCAAGAGCCTTGTAGAGTTGTAGCTGGAGTAGTATATTGGATTGTACTTGGTTTTGGGTCTCCTTGTGATCAAAGGGTGCATACTTCTAATTTTTATAGTTGCTTGTAAGGTTTATTTTTGACTGGAGAGATCTATGAACTAGAATATAATTTGTAGCTTGATGAACTGGTCATCGATCCAGACGGTTAATTTTTGACTGGAGAGACCTATGAACTGCAATAGAATTTGTGGTTTGATGAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8061#0 GTTGAGTCGAGTCTGAGCCACCGCCGGAGGAGAGGAGGGGGGCCGAGCGGCGGAGGCGCG 60
consensus_8061#1 ------------------------------------------------------------
consensus_8061#0 CAAGGGTTTGGGAGCCGCCGCCGGCGACCTTGGCCGGAGCGCAAAAGACTGAGGAGGCGT 120
consensus_8061#1 ------------------------------------------------------------
consensus_8061#0 GGTCGGGGCTTGCCTGCTGCCGGCGGCCGGCGACCGGCGACCAACGGCCAGGACAGCTTG 180
consensus_8061#1 ------------------------------------------------------------
consensus_8061#0 TGCTTATACTGTCCTGATGGAAACCGACAGAAGCCAGCCTGCTCCAATTGACCCAAGAAG 240
consensus_8061#1 ------------------------------------------------------------
consensus_8061#0 AGCTCGCTTTCCTTGTTGTATAGTATGGACACCATTACCGTTAATCTCATGGTTGATCCC 300
consensus_8061#1 ------------------------------------------------------------
consensus_8061#0 CTTTATCGGTCACATTGGCATCTGCAGAGAAGATGGTGTAATTTTGGATTTTGCTGGGCC 360
consensus_8061#1 -----------------------------------------------------CTGGGCC 7
*******
consensus_8061#0 CAATTTTGTATCAGTTGATAACTTCGCGTTTGGAGCAGTTGCACGATATATTCAAGTAAA 420
consensus_8061#1 CAATTTTGTATCAGTTGATAACTTCGCGTTTGGAGCAGTTGCCCGATATATTCAAGTAAA 67
****************************************** *****************
consensus_8061#0 CAGTGATGAGTGCTATAAGCTTCTTGAACCTGAAGGAGCATCAACATGGGATGACGCGCT 480
consensus_8061#1 CAGTGATGAGTGCTATAAGCTTCCTGAACCTGAAGGAGCATCAACATGGGATGACGCGCT 127
*********************** ************************************
consensus_8061#0 GAGGAAAGGCGTGCAGGAGTTCCAGCACAGGGGCTACAGCCTGTTCACCTGCAACTGCCA 540
consensus_8061#1 GAGGAAAGGCGTGCAGGAGTTCCAGCACAGGGGCTACAGCCTGTTCACCTGCAACTGTCA 187
********************************************************* **
consensus_8061#0 CTCCTTCGTCGTGAACAATCTGAACCGTCTGTTCTACTCCGGCCATGACAAATGGAATGT 600
consensus_8061#1 CTCCTTTGTCGTGAACAATTTGAACCGTCTGTTTTACTCCGGCCATGACAAATGGAATGT 247
****** ************ ************* **************************
consensus_8061#0 GGTCAGCCTCGCTGCTGTGATGTTCTTACGGGGTCGCTGGGTGAGCACAGCGTCGGTGGT 660
consensus_8061#1 GGTCAGCCTCGCTGCTGTGATGTTCTTACGGGGTCGCTGGGTGAGTACAGCGTCGGTGGT 307
********************************************* **************
consensus_8061#0 GAAGACTTTTTTCCCATTTGCACTGGTGATCACCATCGGCACTCTCCTTGGCGGCGCGAC 720
consensus_8061#1 GAAGACTTTTTTCCCATTTGCCCTGGTAATCACCATCGGCACTCTCCTTGGCGGCGCGAC 367
********************* ***** ********************************
consensus_8061#0 ATTCCTGATCGGCTTGCTTGCTTTCGCTGCGGTGATGACTGGCTGGTTCCTTGTGGGCAC 780
consensus_8061#1 ATTCCTAATCGGCTTGCTTGCTTTCGCTGCGGTGATGACTGGCTGGTTCCTTGTGGGCAC 427
****** *****************************************************
consensus_8061#0 CTACTGCATCAAGAGCCTTGTAGAGTTGTAGCTGGAGTAGTATATTGGATTGTACTTGGT 840
consensus_8061#1 CTACTGCATCAAGAGCCTTGTAGAGTTGTAGCTGGAGTAGTATATTGGATTGTACTTGGT 487
************************************************************
consensus_8061#0 TTTGGGTCTCCTTGTGATCAAAGGGTGCATACTTCTAATTTTTATAGTTGCTTGTAAGGT 900
consensus_8061#1 TTTGGGTCTCCTTGTGATCAAAGGGTGCATACTTCTAATTTTTATAGTTGCTTGTAAGGT 547
************************************************************
consensus_8061#0 TTATTTTTGACTGGAGAGATCTATGAACTGGAATATAATTTGTAGCTTGATGAACTGGTC 960
consensus_8061#1 TTATTTTTGACTGGAGAGATCTATGAACTAGAATATAATTTGTAGCTTGATGAACTGGTC 607
***************************** ******************************
consensus_8061#0 ATCGATCCAGACGGTTAATTCTTGACTGGAGAGACCTATGAACTGCAATAGAATTTGTGG 1020
consensus_8061#1 ATCGATCCAGACGGTTAATTTTTGACTGGAGAGACCTATGAACTGCAATAGAATTTGTGG 667
******************** ***************************************
consensus_8061#0 TTTGATGAACTGCTCATCAATCCAGATGGTTGCGGCAAAAAAAAAAAAAAAAAAAAAACC 1080
consensus_8061#1 TTTGATGAAAAAAAAAAAAAAAA------------------------------------- 690
********* * **
consensus_8061#0 TCGTGCCGAATTCGGCACG 1099
consensus_8061#1 -------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||