These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8062#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 790 fasta sequence [GCCGCTGAGGAGTACGATGCCAAGAAGGACATGACGAAGGAGAGGCATGTGGAAGCAGATGATGAACAAGGGAAGGAGAAGTGGAGAACTGAAGGAGGAATGGTATTGAAGCTAGCTCACACACAGTACGATTCTGCAAGCCGGTTCTGTTGTTGT-TTAGAAATCAGACCAGCGATTAGTTCAGCTCTCAGATTGGCAAGTTAACGTGGTGGTGTGGGCACTTTGTCTCAATCACTAAGTCCATGTCAACTGACGACATCGTGTTTAGCCTGAAACAAACCTCGAGAAGTATGATAAGCTATCTGAATAATAATCTTCTCATGTTGGTCAAACCTCAACGCTGGAGCGTTTGGACTGAGAAATGATCCCTGCCAACTATTTCAGACAGAAAAGGTTGTTTTATGCCTCTGCCATCAACACGCAGAAATGGTTTCAGGTCCAAATGAAAACTTCAGTTAGGAGACAGAATTTTTAGTCTAGTTTCCAGTATGATCAAATCCGACATTCCTTCTCCAAAAGCAAATCGGTCTGATTTTAAGCACAGACCATGACCGAGGGATGTAAGATGCAAGAATTTCTGAAACGAAGCAAGCATAGGAATTGATTGACCTTGTACGCCTGATGAGTCAGGAGCCACCCAACGAGTCTGACATGTTTCGGTTGGGCTTCAGATTGCCAGAGAACATTGAATTTGNTGTAACTTGATTATGCCTTGAAATCGCATGGTGTATTTTGTACGTCTTGCAGAGTATTATTNCCCATTTGGCTGATCGATCCCCTCCAAAAAAAA] [+] EMBL AU225876 [GCCGCTGAGGAGTACGATGCCAAGAAGGACATGACGAAGGAGAGGCATGTGGAAGCAGATGATGAACAAGGGAAGGAGAAGTGGAGAACTGAAGGAGGAATGGTATTGAAGCTAGCTCACACACAGTACGATTCTGCAAGCCGGTTCTGTTGTTGT TTAGAAATCAGACCAGCGATTAGTTCAGCTCGCAGATTGGCAAGTTAACGTGGTGGTGTGGGCACTTTGTCTCAATCACTAAGTCCATGTCAACTGACGACATCGTGTTTAGCCTGAAACAAACCTCGAGAAGTATGATAAGCTATCTGAATAATAATCTTCTCATGTTGGTCAAACCTCAACGCTGGAGCGTTTGGACTGAGAAATGATCCCTGCCAACTATTTCAGACAGAAAAGGTTGTTTTATGCCTCTGCCATCAACACGCAGgttagtang ] [+] EMBL CA763903 [ gACGA GACAAGGGGGACATGACGAAGGAGAGGCATGTGGAAGCAGATGATGAACAAGGGAAGGAGAAGTGGAGAACTGAAGGAGGAATGGTATTGAAGCTAGCTCACACACAGTACGATTCTGCAAGCCGGTTCTGTTGTTGT TTAGAAATCAGACCAGCGATTAGTTCAGCTCTCAGATTGGCGAGTTAACGTGGTGGTGTGGGCACTTTGTCTCAATCACTAAGTCCATGTCAACTGACGACATCGTGTTTAGCCTGAAACAAACCTCGAGAAGTATGATAAGCTATCTGAATAATAATCTTCTCATGTTGGTCAAACCTCAACGCTGGAGCGTTTGGACTGAGAAATGATCCCTGCCAACTATTTCAGACAGAAAAGGTTGTTTTATGCCTCTGCCATCAACACGCAGAAATGGTTTCAGGTCCAAATGAAAACTTCAGTTAGGAGACAGAATTTTTAGTCTAGTTTCCAGTATGATCAAATCCGACATTCCTTCTCCAAAAGCAAATCGGTCTGATTTTAAGCACAGACCATGACCGAGGGATGTAAGATGCAAGAATTTCTGAAACGAAGCAAGCATAGGAATTGATTGACCTTGTACGCCTGATGAGTCAGGAGCCACCCAACGAGTCTGACATGTTTCGGTTGGGCTTCAGATTGCCAGAGAACATTGAATTTGNTGTAACTTGATTATGCCTTGAAATCGCATGGTGTATTTTGTACGTCTTGCAGAGTATTATTNCCCATTTGG ] [-] EMBL CA761752 [ GTATTAAAG TATCTCCCACCCAGT CGGTTTTG AAACCGGTT TGGT TTGTGTTAGAAATAAGCCCAGCGATTAGTTAGGTTTTAAGA TNGCAAGGTAACGTGGTGGTGTGGGCACTTTGTTTCAATCACTAGGTTCATGTCAACTGGCGCAATCGTGTTTAGCCTGACCAAAACCTCGAGAAGTATGATAAGCTATCTGAATAATAATCTTCTCATGTTGGTCAAACCTCAACGCTGGAGCGTTTGGACTGAGAAATGATCCCTGCCAACTATCTCAGACAGAAAAGGTTGTNTTATGCCTCTGCCATCAACACGCAGAAATGGTTTCAGGTCCAAATGAAAACTTCAGTTAGGAGACAGAATTNTTAGTCTAGTTTCCAGTATGATCAAATCCGACATTCCTTCTCCAAAAGCAAATCGGTCTGATTTTAAGCACAGACCATGACCGAGGGATGTAAGATGCAAGAATTTCTGAAACGAAGCAAGCATAGGAATTGATTGACCTTGTACGCCTGATGAGTCAGGAGCCACCCAACGAGTCTGACATGTTTCGGTTGGGCTTCAGATTGCCAGAGAACATTGAATTTGTTGTAACTTGATTATGCCTTGAAATCGCATGTTGTA TTTGTACGTCTTGCAGAGTATTATTCCCCATTTGGCTGATCGATCCCCTCCAAAAAAAA] consensusID : consensus_8062#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence [AGGAGGAATGGTATGAAGCTAGCTCACACACAGTACGATTTGCAAGCCGGTTCTGTTGTTGTTTAGAAATCAGACCAGCGATTAGTTCAGCTCTCAGATTGGCAAGTTAACGTGGTGGTGTGGGCACTTTGTCTCAATCACTAAGTCCATGTCAACTGACGACATCGTGTTTAGCCTGAAACAAACCTCGAGAAGTATGATAAGCTATCTGAATAATAATCTTCTCATGTTGGTCAAACCTCAACGCTGGAGCGTTTGGACTGAGAAATGATCCCTGCCAACTATTTCAGACAGAAAAGGTTGTTTTATGCCTCTGCCATCAACACGCAGGTTCATTTGTATATTGAGGAGGACTTGTTGGAGCATATATTTCCTAGGGTGTGCGGCTGTACGCCTGTATGTGTTTGCTGAGAAAAGGGCGTGAAAGGGAACCGAACTGTGGCTGGGGCTTGCAGACAAGCGTGTTGAAAACCGATCAGTGGGACCCCGGAATTAATGGAGGCAAAAACGAAAAAAATGGTTAGCCCATTGACTTTGGCCTTTAACTATGTTATCATGTGAAAATCGTTGGGTAATCATGGGTGCTCGAAGGCCCCCAAATTTCCTCGATCCCCATGTGTAACAGAAGTGCTCGGTAATGATTTCAGCCTGTCGTTGAGTATTTTATCCAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CA760590 [AGGAGGAATGGTATGAAGCTAGCTCACACACAGTACGATTTGCAAGCCGGTTCTGTTGTTGTTTAGAAATCAGACCAGCGATTAGTTCAGCTCTCAGATTGGCAAGTTAACGTGGTGGTGTGGGCACTTTGTCTCAATCACTAAGTCCATGTCAACTGACGACATCGTGTTTAGCCTGAAACAAACCTCGAGAAGTATGATAAGCTATCTGAATAATAATCTTCTCATGTTGGTCAAACCTCAACGCTGGAGCGTTTGGACTGAGAAATGATCCCTGCCAACTATTTCAGACAGAAAAGGTTGTTTTATGCCTCTGCCATCAACACGCAGGTTCATTTGTATATTGAGGAGGACTTGTTGGAGCATATATTTCCTAGGGTGTGCGGCTGTACGCCTGTATGTGTTTGCTGAGAAAAGGGCGTGAAAGGGAACCGAACTGTGGCTGGGGCTTGCAGACAAGCGTGTTGAAAACCGATCAGTGGGACCCCGGAATTAATGGAGGCAAAAACGAAAAAAATGGTTAGCCCATTGACTTTGGCCTTTAACTATGTTATCATGTGAAAATCGTTGGGTAATCATGGGTGCTCGAAGGCCCCCAAATTTCCTCGATCCCCATGTGTAACAGAAGTGCTCGGTAATGATTTCAGCCTGTCGTTGAGTATTTTATCCAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_8062#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 646 fasta sequence [GTGGAGAACTGAGGGAGGAACTAATGGGATTGAAGCTTAGCTCACGCGCAGTGATCCTGCAAGCAGGCTCAGATGGTGTTTAGAAATCAGACCAGCGATTAGTTCTGCCAGCAGGTTCAGTCCTTGTCAACTGACGATGTTGTGTTTAGCCTGAAACAAGCCTCGAGAAATATGATAAGGTTATCTGAATAATTGATCTTCTTATCTTGGTCAGACCTCAACGCTGGAGCGTTTGGACTCGGAAATGATCCTTGCCAACTATTCCAGACAGAAAAGGTTGTTTTATGCCTCTGCCATCAACACGCAGGTGAGTAGGTTTATATTCTTCTAAGTGAATTCCTTTTTAAACCTTGCAAGGCGCAGCAAGTTCATTCCAAGTACCAATGCAGTGGACTCTACTTTGTTCCATTTTCCTTTCCTGGTCGAGCAAGAAATGGTTTCGGGTCCAAATGAAAACTTCAGCTTGTAGACAAAATTTTGTCCAGTTTCCAGTGTGGCACACGAGATCAAATCTGACATTCCTTCTCCAAAATCATATCAGTCTCATGTTGAGCACAGGATGCAAGATGTCAAACTTTTATGAACAAGCTAACTGAGCAAGTATGGAAGAAGCTAATATATCAGGTAGAACTCCTACCGNCTACTG] [+] EMBL CA764371 [GTGGAGAACTGAGGGAGGAACTAATGGGATTGAAGCTTAGCTCACGCGCAGTGATCCTGCAAGCAGGCTCAGATGGTGTTTAGAAATCAGACCAGCGATTAGTTCTGCCAGCAGGTTCAGTCCTTGTCAACTGACGATGTTGTGTTTAGCCTGAAACAAGCCTCGAGAAATATGATAAGGTTATCTGAATAATTGATCTTCTTATCTTGGTCAGACCTCAACGCTGGAGCGTTTGGACTCGGAAATGATCCTTGCCAACTATTCCAGACAGAAAAGGTTGTTTTATGCCTCTGCCATCAACACGCAGGTGAGTAGGTTTATATTCTTCTAAGTGAATTCCTTTTTAAACCTTGCAAGGCGCAGCAAGTTCATTCCAAGTACCAATGCAGTGGACTCTACTTTGTTCCATTTTCCTTTCCTGGTCGAGCAAGAAATGGTTTCGGGTCCAAATGAAAACTTCAGCTTGTAGACAAAATTTTGTCCAGTTTCCAGTGTGGCACACGAGATCAAATCTGACATTCCTTCTCCAAAATCATATCAGTCTCATGTTGAGCACAGGATGCAAGATGTCAAACTTTTATGAACAAGCTAACTGAGCAAGTATGGAAGAAGCTAATATATCAGGTAGAACTCCTACCGNCTACTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8062#0 GCCGCTGAGGAGTACGATGCCAAGAAGGACATGACGAAGGAGAGGCATGTGGAAGCAGAT 60 consensus_8062#1 ------------------------------------------------------------ consensus_8062#2 ------------------------------------------------------------ consensus_8062#0 GATGAACAAGGGAAGGAGAAGTGGAGAACTGAAGGAGGAA----TGGTATTGAAGCT-AG 115 consensus_8062#1 --------------------------------AGGAGGAA----TGGTAT-GAAGCT-AG 22 consensus_8062#2 --------------------GTGGAGAACTGAGGGAGGAACTAATGGGATTGAAGCTTAG 40 ******* *** ** ****** ** consensus_8062#0 CTCACACACAGTACGATTCTGCAAGCCGGTTCTGTTGTTGTTTAGAAATCAGACCAGCGA 175 consensus_8062#1 CTCACACACAGTACGATT-TGCAAGCCGGTTCTGTTGTTGTTTAGAAATCAGACCAGCGA 81 consensus_8062#2 CTCACGCGCAGT--GATCCTGCAAGCAGGCTCAGATGGTGTTTAGAAATCAGACCAGCGA 98 ***** * **** *** ******* ** ** * ** ********************** consensus_8062#0 TTAGTTCAGCTCTCAGATTGGCAAGTTAACGTGGTGGTGTGGGCACTTTGTCTCAATCAC 235 consensus_8062#1 TTAGTTCAGCTCTCAGATTGGCAAGTTAACGTGGTGGTGTGGGCACTTTGTCTCAATCAC 141 consensus_8062#2 TTAGTTCTGCCAGCAGGTTC---------------------------------------- 118 ******* ** *** ** consensus_8062#0 TAAGTCCATGTCAACTGACGACATCGTGTTTAGCCTGAAACAAACCTCGAGAAGTATGAT 295 consensus_8062#1 TAAGTCCATGTCAACTGACGACATCGTGTTTAGCCTGAAACAAACCTCGAGAAGTATGAT 201 consensus_8062#2 --AGTCCTTGTCAACTGACGATGTTGTGTTTAGCCTGAAACAAGCCTCGAGAAATATGAT 176 ***** ************* * ****************** ********* ****** consensus_8062#0 AAG-CTATCTGAATAAT-AATCTTCTCATGTTGGTCAAACCTCAACGCTGGAGCGTTTGG 353 consensus_8062#1 AAG-CTATCTGAATAAT-AATCTTCTCATGTTGGTCAAACCTCAACGCTGGAGCGTTTGG 259 consensus_8062#2 AAGGTTATCTGAATAATTGATCTTCTTATCTTGGTCAGACCTCAACGCTGGAGCGTTTGG 236 *** ************ ******* ** ******* ********************** consensus_8062#0 ACTGAGAAATGATCCCTGCCAACTATTTCAGACAGAAAAGGTTGTTTTATGCCTCTGCCA 413 consensus_8062#1 ACTGAGAAATGATCCCTGCCAACTATTTCAGACAGAAAAGGTTGTTTTATGCCTCTGCCA 319 consensus_8062#2 ACTCGGAAATGATCCTTGCCAACTATTCCAGACAGAAAAGGTTGTTTTATGCCTCTGCCA 296 *** ********** *********** ******************************** consensus_8062#0 TCAACACGCAGAAATGGTTTCAGGTCCAAATGAAAACTTCAGTTAGGAGACAGAATTTTT 473 consensus_8062#1 TCAACACGCAGGTTCATTTGTATATTGAG--GAGGACTT--GTTGGAGCATATATTTCCT 375 consensus_8062#2 TCAACACGCAGGTGAG----TAGGTTTAT------ATTCTTCTAAGTGAATTCCTTTTTA 346 *********** * * * * * * * * ** consensus_8062#0 AGTCTAGTTTCCAGTA-TGATCAAATCCGACATTCCTTCTCCAAAAGC---AAATCGGTC 529 consensus_8062#1 AGGGTGTGCGGCTGTA-CGCCTGTATGTGT--TTGCTGAGAAAAGGGCGTGAAAGGGAAC 432 consensus_8062#2 AACCTTGCAAGGCGCAGCAAGTTCATTCCAAGTACCAATGCAGTGGACTCTACTTTGTTC 406 * * * * ** * * * * * * consensus_8062#0 TGATTTTAAGCACAGACC-ATGACCGAGGGATGTAAGATGCAAG---AATTTCTGAAACG 585 consensus_8062#1 CGAACTGTGGCTGGGGCTTGCAGACAAGCGTGTTGAAAACCGAT---CAGTGGGACCCCG 489 consensus_8062#2 CATTTTCCTTTCCTGGTCGAGCAAGAAATGGTTTCGGGTCCAAATGAAAACTTCAGCTTG 466 * * * * * * * * * consensus_8062#0 AAGCAAGCATAGG---AATTGATTGACCTTGTACGCCTGAT-GAGTCAGGAGCCACCCAA 641 consensus_8062#1 GAATTAATGGAGGCAAAAACGAAAAAAATGGTTAGCCCATT-GACTTTGG---CCTTTAA 545 consensus_8062#2 TAGACAAAATTTTGTCCAGTTTCCAGTGTGGCACACGAGATCAAATCTGACATTCCTTCT 526 * * * * * * * * * * consensus_8062#0 CGAGTCTGACATGTT----TCGGTTGGGCTTCA-GATTGCCAGAGAACATTGAATTTGNT 696 consensus_8062#1 CTATGTTATCATGTGAAAATCGTTGGGTAATCATGGGTGCTCGAAGGCCCCCAAATTTCC 605 consensus_8062#2 CCAAA--ATCATATCAGTCTCATGTTGAGCACA-GGATGCAAGATG----TCAAACTTTT 579 * * *** * ** * ** * *** ** ** * consensus_8062#0 GTAACTTGATTATGCCTTGAAATCGCATGGTG-TATTTTGTACGTCTTGCAGAGTATTAT 755 consensus_8062#1 TCGATCCCCATGTGTAACAGAAGTGCTCGGTAATGATTTCAGCCTGTCGTTGAGTATTTT 665 consensus_8062#2 ATGAACAAGCTA---ACTGAGCAAGTATGGAAGAAGCTAATATATCAGGTAGAAC-TCCT 635 * * * ** * * * ** * * consensus_8062#0 TNCCCATTTGGCTGATCGATCCCCTCCAAAAAAAA 790 consensus_8062#1 ATCCAAAAAAAAAAAAAAA--------AAAAAAAA 692 consensus_8062#2 ACCGNCTACTG------------------------ 646 * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||