Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 8062 cluster # 8062       Sequences # 5       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8062#0 length = 790 sequences # 3  
consensus_8062#1 length = 692 sequences # 1  
consensus_8062#2 length = 646 sequences # 1  

consensusID : consensus_8062#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 790
fasta sequence
                              [GCCGCTGAGGAGTACGATGCCAAGAAGGACATGACGAAGGAGAGGCATGTGGAAGCAGATGATGAACAAGGGAAGGAGAAGTGGAGAACTGAAGGAGGAATGGTATTGAAGCTAGCTCACACACAGTACGATTCTGCAAGCCGGTTCTGTTGTTGT-TTAGAAATCAGACCAGCGATTAGTTCAGCTCTCAGATTGGCAAGTTAACGTGGTGGTGTGGGCACTTTGTCTCAATCACTAAGTCCATGTCAACTGACGACATCGTGTTTAGCCTGAAACAAACCTCGAGAAGTATGATAAGCTATCTGAATAATAATCTTCTCATGTTGGTCAAACCTCAACGCTGGAGCGTTTGGACTGAGAAATGATCCCTGCCAACTATTTCAGACAGAAAAGGTTGTTTTATGCCTCTGCCATCAACACGCAGAAATGGTTTCAGGTCCAAATGAAAACTTCAGTTAGGAGACAGAATTTTTAGTCTAGTTTCCAGTATGATCAAATCCGACATTCCTTCTCCAAAAGCAAATCGGTCTGATTTTAAGCACAGACCATGACCGAGGGATGTAAGATGCAAGAATTTCTGAAACGAAGCAAGCATAGGAATTGATTGACCTTGTACGCCTGATGAGTCAGGAGCCACCCAACGAGTCTGACATGTTTCGGTTGGGCTTCAGATTGCCAGAGAACATTGAATTTGNTGTAACTTGATTATGCCTTGAAATCGCATGGTGTATTTTGTACGTCTTGCAGAGTATTATTNCCCATTTGGCTGATCGATCCCCTCCAAAAAAAA]

[+] EMBL AU225876             [GCCGCTGAGGAGTACGATGCCAAGAAGGACATGACGAAGGAGAGGCATGTGGAAGCAGATGATGAACAAGGGAAGGAGAAGTGGAGAACTGAAGGAGGAATGGTATTGAAGCTAGCTCACACACAGTACGATTCTGCAAGCCGGTTCTGTTGTTGT TTAGAAATCAGACCAGCGATTAGTTCAGCTCGCAGATTGGCAAGTTAACGTGGTGGTGTGGGCACTTTGTCTCAATCACTAAGTCCATGTCAACTGACGACATCGTGTTTAGCCTGAAACAAACCTCGAGAAGTATGATAAGCTATCTGAATAATAATCTTCTCATGTTGGTCAAACCTCAACGCTGGAGCGTTTGGACTGAGAAATGATCCCTGCCAACTATTTCAGACAGAAAAGGTTGTTTTATGCCTCTGCCATCAACACGCAGgttagtang                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CA763903             [            gACGA GACAAGGGGGACATGACGAAGGAGAGGCATGTGGAAGCAGATGATGAACAAGGGAAGGAGAAGTGGAGAACTGAAGGAGGAATGGTATTGAAGCTAGCTCACACACAGTACGATTCTGCAAGCCGGTTCTGTTGTTGT TTAGAAATCAGACCAGCGATTAGTTCAGCTCTCAGATTGGCGAGTTAACGTGGTGGTGTGGGCACTTTGTCTCAATCACTAAGTCCATGTCAACTGACGACATCGTGTTTAGCCTGAAACAAACCTCGAGAAGTATGATAAGCTATCTGAATAATAATCTTCTCATGTTGGTCAAACCTCAACGCTGGAGCGTTTGGACTGAGAAATGATCCCTGCCAACTATTTCAGACAGAAAAGGTTGTTTTATGCCTCTGCCATCAACACGCAGAAATGGTTTCAGGTCCAAATGAAAACTTCAGTTAGGAGACAGAATTTTTAGTCTAGTTTCCAGTATGATCAAATCCGACATTCCTTCTCCAAAAGCAAATCGGTCTGATTTTAAGCACAGACCATGACCGAGGGATGTAAGATGCAAGAATTTCTGAAACGAAGCAAGCATAGGAATTGATTGACCTTGTACGCCTGATGAGTCAGGAGCCACCCAACGAGTCTGACATGTTTCGGTTGGGCTTCAGATTGCCAGAGAACATTGAATTTGNTGTAACTTGATTATGCCTTGAAATCGCATGGTGTATTTTGTACGTCTTGCAGAGTATTATTNCCCATTTGG                        ]
[-] EMBL CA761752             [                                                                                                      GTATTAAAG TATCTCCCACCCAGT CGGTTTTG AAACCGGTT TGGT TTGTGTTAGAAATAAGCCCAGCGATTAGTTAGGTTTTAAGA TNGCAAGGTAACGTGGTGGTGTGGGCACTTTGTTTCAATCACTAGGTTCATGTCAACTGGCGCAATCGTGTTTAGCCTGACCAAAACCTCGAGAAGTATGATAAGCTATCTGAATAATAATCTTCTCATGTTGGTCAAACCTCAACGCTGGAGCGTTTGGACTGAGAAATGATCCCTGCCAACTATCTCAGACAGAAAAGGTTGTNTTATGCCTCTGCCATCAACACGCAGAAATGGTTTCAGGTCCAAATGAAAACTTCAGTTAGGAGACAGAATTNTTAGTCTAGTTTCCAGTATGATCAAATCCGACATTCCTTCTCCAAAAGCAAATCGGTCTGATTTTAAGCACAGACCATGACCGAGGGATGTAAGATGCAAGAATTTCTGAAACGAAGCAAGCATAGGAATTGATTGACCTTGTACGCCTGATGAGTCAGGAGCCACCCAACGAGTCTGACATGTTTCGGTTGGGCTTCAGATTGCCAGAGAACATTGAATTTGTTGTAACTTGATTATGCCTTGAAATCGCATGTTGTA TTTGTACGTCTTGCAGAGTATTATTCCCCATTTGGCTGATCGATCCCCTCCAAAAAAAA]


>consensus_8062#0 GCCGCTGAGGAGTACGATGCCAAGAAGGACATGACGAAGGAGAGGCATGTGGAAGCAGAT GATGAACAAGGGAAGGAGAAGTGGAGAACTGAAGGAGGAATGGTATTGAAGCTAGCTCAC ACACAGTACGATTCTGCAAGCCGGTTCTGTTGTTGTTTAGAAATCAGACCAGCGATTAGT TCAGCTCTCAGATTGGCAAGTTAACGTGGTGGTGTGGGCACTTTGTCTCAATCACTAAGT CCATGTCAACTGACGACATCGTGTTTAGCCTGAAACAAACCTCGAGAAGTATGATAAGCT ATCTGAATAATAATCTTCTCATGTTGGTCAAACCTCAACGCTGGAGCGTTTGGACTGAGA AATGATCCCTGCCAACTATTTCAGACAGAAAAGGTTGTTTTATGCCTCTGCCATCAACAC GCAGAAATGGTTTCAGGTCCAAATGAAAACTTCAGTTAGGAGACAGAATTTTTAGTCTAG TTTCCAGTATGATCAAATCCGACATTCCTTCTCCAAAAGCAAATCGGTCTGATTTTAAGC ACAGACCATGACCGAGGGATGTAAGATGCAAGAATTTCTGAAACGAAGCAAGCATAGGAA TTGATTGACCTTGTACGCCTGATGAGTCAGGAGCCACCCAACGAGTCTGACATGTTTCGG TTGGGCTTCAGATTGCCAGAGAACATTGAATTTGNTGTAACTTGATTATGCCTTGAAATC GCATGGTGTATTTTGTACGTCTTGCAGAGTATTATTNCCCATTTGGCTGATCGATCCCCT CCAAAAAAAA



consensusID : consensus_8062#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 692
fasta sequence
                              [AGGAGGAATGGTATGAAGCTAGCTCACACACAGTACGATTTGCAAGCCGGTTCTGTTGTTGTTTAGAAATCAGACCAGCGATTAGTTCAGCTCTCAGATTGGCAAGTTAACGTGGTGGTGTGGGCACTTTGTCTCAATCACTAAGTCCATGTCAACTGACGACATCGTGTTTAGCCTGAAACAAACCTCGAGAAGTATGATAAGCTATCTGAATAATAATCTTCTCATGTTGGTCAAACCTCAACGCTGGAGCGTTTGGACTGAGAAATGATCCCTGCCAACTATTTCAGACAGAAAAGGTTGTTTTATGCCTCTGCCATCAACACGCAGGTTCATTTGTATATTGAGGAGGACTTGTTGGAGCATATATTTCCTAGGGTGTGCGGCTGTACGCCTGTATGTGTTTGCTGAGAAAAGGGCGTGAAAGGGAACCGAACTGTGGCTGGGGCTTGCAGACAAGCGTGTTGAAAACCGATCAGTGGGACCCCGGAATTAATGGAGGCAAAAACGAAAAAAATGGTTAGCCCATTGACTTTGGCCTTTAACTATGTTATCATGTGAAAATCGTTGGGTAATCATGGGTGCTCGAAGGCCCCCAAATTTCCTCGATCCCCATGTGTAACAGAAGTGCTCGGTAATGATTTCAGCCTGTCGTTGAGTATTTTATCCAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CA760590             [AGGAGGAATGGTATGAAGCTAGCTCACACACAGTACGATTTGCAAGCCGGTTCTGTTGTTGTTTAGAAATCAGACCAGCGATTAGTTCAGCTCTCAGATTGGCAAGTTAACGTGGTGGTGTGGGCACTTTGTCTCAATCACTAAGTCCATGTCAACTGACGACATCGTGTTTAGCCTGAAACAAACCTCGAGAAGTATGATAAGCTATCTGAATAATAATCTTCTCATGTTGGTCAAACCTCAACGCTGGAGCGTTTGGACTGAGAAATGATCCCTGCCAACTATTTCAGACAGAAAAGGTTGTTTTATGCCTCTGCCATCAACACGCAGGTTCATTTGTATATTGAGGAGGACTTGTTGGAGCATATATTTCCTAGGGTGTGCGGCTGTACGCCTGTATGTGTTTGCTGAGAAAAGGGCGTGAAAGGGAACCGAACTGTGGCTGGGGCTTGCAGACAAGCGTGTTGAAAACCGATCAGTGGGACCCCGGAATTAATGGAGGCAAAAACGAAAAAAATGGTTAGCCCATTGACTTTGGCCTTTAACTATGTTATCATGTGAAAATCGTTGGGTAATCATGGGTGCTCGAAGGCCCCCAAATTTCCTCGATCCCCATGTGTAACAGAAGTGCTCGGTAATGATTTCAGCCTGTCGTTGAGTATTTTATCCAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_8062#1 AGGAGGAATGGTATGAAGCTAGCTCACACACAGTACGATTTGCAAGCCGGTTCTGTTGTT GTTTAGAAATCAGACCAGCGATTAGTTCAGCTCTCAGATTGGCAAGTTAACGTGGTGGTG TGGGCACTTTGTCTCAATCACTAAGTCCATGTCAACTGACGACATCGTGTTTAGCCTGAA ACAAACCTCGAGAAGTATGATAAGCTATCTGAATAATAATCTTCTCATGTTGGTCAAACC TCAACGCTGGAGCGTTTGGACTGAGAAATGATCCCTGCCAACTATTTCAGACAGAAAAGG TTGTTTTATGCCTCTGCCATCAACACGCAGGTTCATTTGTATATTGAGGAGGACTTGTTG GAGCATATATTTCCTAGGGTGTGCGGCTGTACGCCTGTATGTGTTTGCTGAGAAAAGGGC GTGAAAGGGAACCGAACTGTGGCTGGGGCTTGCAGACAAGCGTGTTGAAAACCGATCAGT GGGACCCCGGAATTAATGGAGGCAAAAACGAAAAAAATGGTTAGCCCATTGACTTTGGCC TTTAACTATGTTATCATGTGAAAATCGTTGGGTAATCATGGGTGCTCGAAGGCCCCCAAA TTTCCTCGATCCCCATGTGTAACAGAAGTGCTCGGTAATGATTTCAGCCTGTCGTTGAGT ATTTTATCCAAAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_8062#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 646
fasta sequence
                              [GTGGAGAACTGAGGGAGGAACTAATGGGATTGAAGCTTAGCTCACGCGCAGTGATCCTGCAAGCAGGCTCAGATGGTGTTTAGAAATCAGACCAGCGATTAGTTCTGCCAGCAGGTTCAGTCCTTGTCAACTGACGATGTTGTGTTTAGCCTGAAACAAGCCTCGAGAAATATGATAAGGTTATCTGAATAATTGATCTTCTTATCTTGGTCAGACCTCAACGCTGGAGCGTTTGGACTCGGAAATGATCCTTGCCAACTATTCCAGACAGAAAAGGTTGTTTTATGCCTCTGCCATCAACACGCAGGTGAGTAGGTTTATATTCTTCTAAGTGAATTCCTTTTTAAACCTTGCAAGGCGCAGCAAGTTCATTCCAAGTACCAATGCAGTGGACTCTACTTTGTTCCATTTTCCTTTCCTGGTCGAGCAAGAAATGGTTTCGGGTCCAAATGAAAACTTCAGCTTGTAGACAAAATTTTGTCCAGTTTCCAGTGTGGCACACGAGATCAAATCTGACATTCCTTCTCCAAAATCATATCAGTCTCATGTTGAGCACAGGATGCAAGATGTCAAACTTTTATGAACAAGCTAACTGAGCAAGTATGGAAGAAGCTAATATATCAGGTAGAACTCCTACCGNCTACTG]

[+] EMBL CA764371             [GTGGAGAACTGAGGGAGGAACTAATGGGATTGAAGCTTAGCTCACGCGCAGTGATCCTGCAAGCAGGCTCAGATGGTGTTTAGAAATCAGACCAGCGATTAGTTCTGCCAGCAGGTTCAGTCCTTGTCAACTGACGATGTTGTGTTTAGCCTGAAACAAGCCTCGAGAAATATGATAAGGTTATCTGAATAATTGATCTTCTTATCTTGGTCAGACCTCAACGCTGGAGCGTTTGGACTCGGAAATGATCCTTGCCAACTATTCCAGACAGAAAAGGTTGTTTTATGCCTCTGCCATCAACACGCAGGTGAGTAGGTTTATATTCTTCTAAGTGAATTCCTTTTTAAACCTTGCAAGGCGCAGCAAGTTCATTCCAAGTACCAATGCAGTGGACTCTACTTTGTTCCATTTTCCTTTCCTGGTCGAGCAAGAAATGGTTTCGGGTCCAAATGAAAACTTCAGCTTGTAGACAAAATTTTGTCCAGTTTCCAGTGTGGCACACGAGATCAAATCTGACATTCCTTCTCCAAAATCATATCAGTCTCATGTTGAGCACAGGATGCAAGATGTCAAACTTTTATGAACAAGCTAACTGAGCAAGTATGGAAGAAGCTAATATATCAGGTAGAACTCCTACCGNCTACTG]


>consensus_8062#2 GTGGAGAACTGAGGGAGGAACTAATGGGATTGAAGCTTAGCTCACGCGCAGTGATCCTGC AAGCAGGCTCAGATGGTGTTTAGAAATCAGACCAGCGATTAGTTCTGCCAGCAGGTTCAG TCCTTGTCAACTGACGATGTTGTGTTTAGCCTGAAACAAGCCTCGAGAAATATGATAAGG TTATCTGAATAATTGATCTTCTTATCTTGGTCAGACCTCAACGCTGGAGCGTTTGGACTC GGAAATGATCCTTGCCAACTATTCCAGACAGAAAAGGTTGTTTTATGCCTCTGCCATCAA CACGCAGGTGAGTAGGTTTATATTCTTCTAAGTGAATTCCTTTTTAAACCTTGCAAGGCG CAGCAAGTTCATTCCAAGTACCAATGCAGTGGACTCTACTTTGTTCCATTTTCCTTTCCT GGTCGAGCAAGAAATGGTTTCGGGTCCAAATGAAAACTTCAGCTTGTAGACAAAATTTTG TCCAGTTTCCAGTGTGGCACACGAGATCAAATCTGACATTCCTTCTCCAAAATCATATCA GTCTCATGTTGAGCACAGGATGCAAGATGTCAAACTTTTATGAACAAGCTAACTGAGCAA GTATGGAAGAAGCTAATATATCAGGTAGAACTCCTACCGNCTACTG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8062#0      GCCGCTGAGGAGTACGATGCCAAGAAGGACATGACGAAGGAGAGGCATGTGGAAGCAGAT 60
consensus_8062#1      ------------------------------------------------------------
consensus_8062#2      ------------------------------------------------------------
                                                                                  

consensus_8062#0      GATGAACAAGGGAAGGAGAAGTGGAGAACTGAAGGAGGAA----TGGTATTGAAGCT-AG 115
consensus_8062#1      --------------------------------AGGAGGAA----TGGTAT-GAAGCT-AG 22
consensus_8062#2      --------------------GTGGAGAACTGAGGGAGGAACTAATGGGATTGAAGCTTAG 40
                                                       *******    *** ** ****** **

consensus_8062#0      CTCACACACAGTACGATTCTGCAAGCCGGTTCTGTTGTTGTTTAGAAATCAGACCAGCGA 175
consensus_8062#1      CTCACACACAGTACGATT-TGCAAGCCGGTTCTGTTGTTGTTTAGAAATCAGACCAGCGA 81
consensus_8062#2      CTCACGCGCAGT--GATCCTGCAAGCAGGCTCAGATGGTGTTTAGAAATCAGACCAGCGA 98
                      ***** * ****  ***  ******* ** ** * ** **********************

consensus_8062#0      TTAGTTCAGCTCTCAGATTGGCAAGTTAACGTGGTGGTGTGGGCACTTTGTCTCAATCAC 235
consensus_8062#1      TTAGTTCAGCTCTCAGATTGGCAAGTTAACGTGGTGGTGTGGGCACTTTGTCTCAATCAC 141
consensus_8062#2      TTAGTTCTGCCAGCAGGTTC---------------------------------------- 118
                      ******* **   *** **                                         

consensus_8062#0      TAAGTCCATGTCAACTGACGACATCGTGTTTAGCCTGAAACAAACCTCGAGAAGTATGAT 295
consensus_8062#1      TAAGTCCATGTCAACTGACGACATCGTGTTTAGCCTGAAACAAACCTCGAGAAGTATGAT 201
consensus_8062#2      --AGTCCTTGTCAACTGACGATGTTGTGTTTAGCCTGAAACAAGCCTCGAGAAATATGAT 176
                        ***** *************  * ****************** ********* ******

consensus_8062#0      AAG-CTATCTGAATAAT-AATCTTCTCATGTTGGTCAAACCTCAACGCTGGAGCGTTTGG 353
consensus_8062#1      AAG-CTATCTGAATAAT-AATCTTCTCATGTTGGTCAAACCTCAACGCTGGAGCGTTTGG 259
consensus_8062#2      AAGGTTATCTGAATAATTGATCTTCTTATCTTGGTCAGACCTCAACGCTGGAGCGTTTGG 236
                      ***  ************  ******* ** ******* **********************

consensus_8062#0      ACTGAGAAATGATCCCTGCCAACTATTTCAGACAGAAAAGGTTGTTTTATGCCTCTGCCA 413
consensus_8062#1      ACTGAGAAATGATCCCTGCCAACTATTTCAGACAGAAAAGGTTGTTTTATGCCTCTGCCA 319
consensus_8062#2      ACTCGGAAATGATCCTTGCCAACTATTCCAGACAGAAAAGGTTGTTTTATGCCTCTGCCA 296
                      ***  ********** *********** ********************************

consensus_8062#0      TCAACACGCAGAAATGGTTTCAGGTCCAAATGAAAACTTCAGTTAGGAGACAGAATTTTT 473
consensus_8062#1      TCAACACGCAGGTTCATTTGTATATTGAG--GAGGACTT--GTTGGAGCATATATTTCCT 375
consensus_8062#2      TCAACACGCAGGTGAG----TAGGTTTAT------ATTCTTCTAAGTGAATTCCTTTTTA 346
                      ***********          *  *  *       * *    *  *   *     **   

consensus_8062#0      AGTCTAGTTTCCAGTA-TGATCAAATCCGACATTCCTTCTCCAAAAGC---AAATCGGTC 529
consensus_8062#1      AGGGTGTGCGGCTGTA-CGCCTGTATGTGT--TTGCTGAGAAAAGGGCGTGAAAGGGAAC 432
consensus_8062#2      AACCTTGCAAGGCGCAGCAAGTTCATTCCAAGTACCAATGCAGTGGACTCTACTTTGTTC 406
                      *   *        * *        **      *  *           *   *    *  *

consensus_8062#0      TGATTTTAAGCACAGACC-ATGACCGAGGGATGTAAGATGCAAG---AATTTCTGAAACG 585
consensus_8062#1      CGAACTGTGGCTGGGGCTTGCAGACAAGCGTGTTGAAAACCGAT---CAGTGGGACCCCG 489
consensus_8062#2      CATTTTCCTTTCCTGGTCGAGCAAGAAATGGTTTCGGGTCCAAATGAAAACTTCAGCTTG 466
                           *        *           *  *   *      * *     *          *

consensus_8062#0      AAGCAAGCATAGG---AATTGATTGACCTTGTACGCCTGAT-GAGTCAGGAGCCACCCAA 641
consensus_8062#1      GAATTAATGGAGGCAAAAACGAAAAAAATGGTTAGCCCATT-GACTTTGG---CCTTTAA 545
consensus_8062#2      TAGACAAAATTTTGTCCAGTTTCCAGTGTGGCACACGAGATCAAATCTGACATTCCTTCT 526
                       *   *           *          * *    *    *  * *  *           

consensus_8062#0      CGAGTCTGACATGTT----TCGGTTGGGCTTCA-GATTGCCAGAGAACATTGAATTTGNT 696
consensus_8062#1      CTATGTTATCATGTGAAAATCGTTGGGTAATCATGGGTGCTCGAAGGCCCCCAAATTTCC 605
consensus_8062#2      CCAAA--ATCATATCAGTCTCATGTTGAGCACA-GGATGCAAGATG----TCAAACTTTT 579
                      * *      *** *     **     *    ** *  ***  **        **  *   

consensus_8062#0      GTAACTTGATTATGCCTTGAAATCGCATGGTG-TATTTTGTACGTCTTGCAGAGTATTAT 755
consensus_8062#1      TCGATCCCCATGTGTAACAGAAGTGCTCGGTAATGATTTCAGCCTGTCGTTGAGTATTTT 665
consensus_8062#2      ATGAACAAGCTA---ACTGAGCAAGTATGGAAGAAGCTAATATATCAGGTAGAAC-TCCT 635
                         *      *             *   **       *      *   *  **   *  *

consensus_8062#0      TNCCCATTTGGCTGATCGATCCCCTCCAAAAAAAA 790
consensus_8062#1      ATCCAAAAAAAAAAAAAAA--------AAAAAAAA 692
consensus_8062#2      ACCGNCTACTG------------------------ 646
                        *                                




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)