These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8072#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 869 fasta sequence [ACACGCCCCCGTCTTTTCCCAAAGACGCGAGCTCGCCGCTGCGCAGCATCCAGATTCCAGATAGTACTATTGGCAAAGCACAGGTTTGGGGCGCCATGGGCTCCTACCACTACACCTCCACCTCCCACTTCTTCTTCGCCGGCGGCGGCGAGGGGGAGTACTCCAGCTACAAGGGTACTGGTAGCACCGACACCCACAGGCCCACCACCGTGCGGATCCCGGTTACCACCCCGGGCCCGGAGCGGCCGCCGGACGACGCGGCGGCGGCCAGGATCCAGGCCGCGTTCCGGGGGCACCTGGTGAGGAGGCACGCCGCGGCCGTCCGCGGCGCCGACGACGAGGCGACGCGGCTGGAGCGGCTGCTCCGGAGGCAGGAGACAGTGGACGCCGTCCGCGGCGACGAGCGCGAGCGGGCGCGGTTCTCGGAGGCGCTCATGGCCGTGCTGCTCCGCCTCGACGCCGTCCCGGGGTACTACCCGGCCGTGCGGGAGGCGCGCCGCGCCGTGACCCGCCGCGTGGTGGGGCTGCAGGAGGTGTTCGACGCCGTGCTCGCCGCGCCCGACGCCGCCGACACGTGCGGGGTCCCCGCCAGCCTGGATCAGGTCCTCGAGGGGATCTGGGGAGAGTCGCCGGCTGCGCCGCCACCGCCGCCGCCGCCGCCGCCGCCAGCGGCGGTGGAGGTGGAGGAGGAGGTGGTGAGGAGTCCGTGCTGGAGGAGATTTTTCGGGGGAGTGTAGCAAGTGGTGTAAACTGTCAAAAGCGTATGCAACCGAATTTGTTGGGAAATATGCCGGAAATATGTTGGTGTGTACCTATAAAGTATTAAAGTGGTGTAGTATAATGCTATGAACAATCACGTAACATAGTAA] [+] EMBL AK119930 [ACACGCCCCCGTCTTTTCCCAAAGACGCGAGCTCGCCGCTGCGCAGCATCCAGATTCCAGATAGTACTATTGGCAAAGCACAGGTTTGGGGCGCCATGGGCTCCTACCACTACACCTCCACCTCCCACTTCTTCTTCGCCGGCGGCGGCGAGGGGGAGTACTCCAGCTACAAGGGTACTGGTAGCACCGACACCCACAGGCCCACCACCGTGCGGATCCCGGTTACCACCCCGGGCCCGGAGCGGCCGCCGGACGACGCGGCGGCGGCCAGGATCCAGGCCGCGTTCCGGGGGCACCTGGTGAGGAGGCACGCCGCGGCCGTCCGCGGCGCCGACGACGAGGCGACGCGGCTGGAGCGGCTGCTCCGGAGGCAGGAGACAGTGGACGCCGTCCGCGGCGACGAGCGCGAGCGGGCGCGGTTCTCGGAGGCGCTCATGGCCGTGCTGCTCCGCCTCGACGCCGTCCCGGGGTACTACCCGGCCGTGCGGGAGGCGCGCCGCGCCGTGACCCGCCGCGTGGTGGGGCTGCAGGAGGTGTTCGACGCCGTGCTCGCCGCGCCCGACGCCGCCGACACGTGCGGGGTCCCCGCCAGCCTGGATCAGGTCCTCGAGGGGATCTGGGGAGAGTCGCCGGCTGCGCCGCCACCGCCGCCGCCGCCGCCGCCGCCAGCGGCGGTGGAGGTGGAGGAGGAGGTGGTGAGGAGTCCGTGCTGGAGGAGATTTTTCGGGGGAGTGTAGCAAGTGGTGTAAACTGTCAAAAGCGTATGCAACCGAATTTGTTGGGAAATATGCCGGAAATATGTTGGTGTGTACCTATAAAGTATTAAAGTGGTGTAGTATAATGCTATGAACAATCACGTAACATAGTAA] [+] EMBL AU101344 [ cttnCGGCGGCCAGGATCCAGGCCGCGTTCCGGGGGCACCTGGTGAGGAGGCACGCCGCGGCCGTCCGCGGCGCCGACGACGAGGCGACGCGGCTGGAGCGGCTGCTCCGGAGGCAGGAGACAGTGGACGCCGTCCGCGGCGACGAGCGCGAGCGGGCGCGGTTCTCGGAGGCGCTCATGGCCGTGCTGCTCCGCCTCGACGCCGTCCCGGGGTACTACCCGGCCGTGCGGGAGGCGCGCCGCGCCGTGACCCGCCGCGTGGTGGGGCTGCAGGAGGTGTTCGACGCCGTGCTCGCCGCGCCCGACGCCGTCGACACGTGCGGGGTCCCCGCCAGCCTGGATCAGGTCCTCGAGGGGATCTGGGGAGAGTCGCCGGCTGCGCCGCCACCGNCGCCGCCGCCGCCGCCGTCAGCGGCGGTGGAGGTGGAGGAGGAGGTGGTGAGGAGTCCGTGC ] [-] EMBL OSC30741 [ TCCCCGCCAGCCTGGATCAGGTCCTCGAGGGGATCTGGGGANAGT NCTGCNTGCTCCGCCACCGCCGCCGCCNCCGCCG CGCCAGCGGCGGTGCAGGTGGAGGAGGAGGTGGTGAGGAGTCCGTGCTGNAGGAGATTTTTCGGGGGAGTGTAGCAAGTGGTGTAAACTGTCAAAAGTGTATGCAACCGAATTTGTTGGGAAATATGCCGGAA ] consensusID : consensus_8072#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 148 fasta sequence [AGGANATTTTTCGGGGGAGTNTAGCAAGTGGTGTAAACTGTNAAAAGTGTATGCAACCNAATTTGTTGGGAAATATGCCGGAAATATGTTGGTGTGTNCCTATAAAGTATTAAAGTGGTGTAGTATAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL C99396 [AGGANATTTTTCGGGGGAGTNTAGCAAGTGGTGTAAACTGTNAAAAGTGTATGCAACCNAATTTGTTGGGAAATATGCCGGAAATATGTTGGTGTGTNCCTATAAAGTATTAAAGTGGTGTAGTATAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_8072#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 138 fasta sequence [GAGGAGTCCGTGCTGGAGGAGATTTTTCGGGGGAGTGTAGCAAGTGGTGTAAACTGTCAAAAGTGTATGCAACCGAATTTGTTGGGAAATATGCCGGAAATATGTTGGTGTGTAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU094494 [GAGGAGTCCGTGCTGGAGGAGATTTTTCGGGGGAGTGTAGCAAGTGGTGTAAACTGTCAAAAGTGTATGCAACCGAATTTGTTGGGAAATATGCCGGAAATATGTTGGTGTGTAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8072#0 ACACGCCCCCGTCTTTTCCCAAAGACGCGAGCTCGCCGCTGCGCAGCATCCAGATTCCAG 60 consensus_8072#2 ------------------------------------------------------------ consensus_8072#1 ------------------------------------------------------------ consensus_8072#0 ATAGTACTATTGGCAAAGCACAGGTTTGGGGCGCCATGGGCTCCTACCACTACACCTCCA 120 consensus_8072#2 ------------------------------------------------------------ consensus_8072#1 ------------------------------------------------------------ consensus_8072#0 CCTCCCACTTCTTCTTCGCCGGCGGCGGCGAGGGGGAGTACTCCAGCTACAAGGGTACTG 180 consensus_8072#2 ------------------------------------------------------------ consensus_8072#1 ------------------------------------------------------------ consensus_8072#0 GTAGCACCGACACCCACAGGCCCACCACCGTGCGGATCCCGGTTACCACCCCGGGCCCGG 240 consensus_8072#2 ------------------------------------------------------------ consensus_8072#1 ------------------------------------------------------------ consensus_8072#0 AGCGGCCGCCGGACGACGCGGCGGCGGCCAGGATCCAGGCCGCGTTCCGGGGGCACCTGG 300 consensus_8072#2 ------------------------------------------------------------ consensus_8072#1 ------------------------------------------------------------ consensus_8072#0 TGAGGAGGCACGCCGCGGCCGTCCGCGGCGCCGACGACGAGGCGACGCGGCTGGAGCGGC 360 consensus_8072#2 ------------------------------------------------------------ consensus_8072#1 ------------------------------------------------------------ consensus_8072#0 TGCTCCGGAGGCAGGAGACAGTGGACGCCGTCCGCGGCGACGAGCGCGAGCGGGCGCGGT 420 consensus_8072#2 ------------------------------------------------------------ consensus_8072#1 ------------------------------------------------------------ consensus_8072#0 TCTCGGAGGCGCTCATGGCCGTGCTGCTCCGCCTCGACGCCGTCCCGGGGTACTACCCGG 480 consensus_8072#2 ------------------------------------------------------------ consensus_8072#1 ------------------------------------------------------------ consensus_8072#0 CCGTGCGGGAGGCGCGCCGCGCCGTGACCCGCCGCGTGGTGGGGCTGCAGGAGGTGTTCG 540 consensus_8072#2 ------------------------------------------------------------ consensus_8072#1 ------------------------------------------------------------ consensus_8072#0 ACGCCGTGCTCGCCGCGCCCGACGCCGCCGACACGTGCGGGGTCCCCGCCAGCCTGGATC 600 consensus_8072#2 ------------------------------------------------------------ consensus_8072#1 ------------------------------------------------------------ consensus_8072#0 AGGTCCTCGAGGGGATCTGGGGAGAGTCGCCGGCTGCGCCGCCACCGCCGCCGCCGCCGC 660 consensus_8072#2 ------------------------------------------------------------ consensus_8072#1 ------------------------------------------------------------ consensus_8072#0 CGCCGCCAGCGGCGGTGGAGGTGGAGGAGGAGGTGGTGAGGAGTCCGTGCTGGAGGAGAT 720 consensus_8072#2 -------------------------------------GAGGAGTCCGTGCTGGAGGAGAT 23 consensus_8072#1 -----------------------------------------------------AGGANAT 7 **** ** consensus_8072#0 TTTTCGGGGGAGTGTAGCAAGTGGTGTAAACTGTCAAAAGCGTATGCAACCGAATTTGTT 780 consensus_8072#2 TTTTCGGGGGAGTGTAGCAAGTGGTGTAAACTGTCAAAAGTGTATGCAACCGAATTTGTT 83 consensus_8072#1 TTTTCGGGGGAGTNTAGCAAGTGGTGTAAACTGTNAAAAGTGTATGCAACCNAATTTGTT 67 ************* ******************** ***** ********** ******** consensus_8072#0 GGGAAATATGCCGGAAATATGTTGGTGTGTACCTATAAAGTATTAAAGTGGTGTAGTATA 840 consensus_8072#2 GGGAAATATGCCGGAAATATGTTGGTGTGTAAAAAAAAAAAAAAAAAAAAAAAAA----- 138 consensus_8072#1 GGGAAATATGCCGGAAATATGTTGGTGTGTNCCTATAAAGTATTAAAGTGGTGTAGTATA 127 ****************************** * *** * *** * consensus_8072#0 ATGCTATGAACAATCACGTAACATAGTAA 869 consensus_8072#2 ----------------------------- consensus_8072#1 AAAAAAAAAAAAAAAAAAAAA-------- 148 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||