These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8073#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1554 fasta sequence [AAAAAAAAATGGCCAAAACCTTGTAAAAAGCAAAACCCACTCGCCACTAATCGACGCCATTGGCGAGAGCTCGAGCGCGCAACACCACCACGCGGTAGCCTCCCCCAACCTCCACCTCCTCCTCCTCCGCCCGCCCCAGAGCCACCGGATGGCCTCGCTTCTGTAGGAGTAGAGGCGTAGAGCCCAGCGCGAGGGAAGGCGGCGATTGATTTGATTTGACCAAGATTGGTCGGCCGTGCCGTCTGGTCTGAGGAGCCCGGCTCTGGGGGATGGCGGCGGTGGCGGGGGGATCGCGCGCGGCTCCACCGGCGGATTCCGCTGCCGTGGCGGCGGTGGCGAAGGAGGCGGAATACCAGAAGGGCGTGCAGAAGCTGGTGGACCTGCTGTCCAAGCTGAACCCGGCTGCCAAGGAGTTCGTCCCCTCGTCGGCGGCGGTCTCGTCGCCGTCCAGGAAGGCGCTGTCGGCGGACGCGCCGGTGTTCGACTACAACTCGATCGGAGGCTGGAACGGGGGCGGCAAGGAATCCGGCGCCGACGCCTACCAGCAGCGTCGGAGGAGGAATGGATACCTCAGTCAAGGAAGGAGGAGGATGAACGAGAGAGCAAGGCATGCAGACAGGGAAGACAGCATTCGGCGAACTGTTTATGTTTCTGATATTGACCATACTGTGACGGAGGAGAGACTTGCTGATATATTTGCTAACTGTGGGCAAGTCGTTGACTGCAGAATCTGTGGTGATCCACACTCAGTTCTAAGGTTTGCATTCATTGAGTTTGCTGATGAAGAGGGCGCAAGAACTGCACTTAACCTTGGTGGCACAATGCTTGGTTTCTACCCTGTTAGAGTCTTACCTTCAAAGACAGCTATATTGCCTGTGAATCCAAAGTTCCTTCCTAGGACGGAGGATGAGAAGGAAATGGTCATAAGAACTGTTTATTGTACAAACATAGATAAGAAGGTTACTCAATTAGATGTAAAGAATTTCTTTGAAGAACTTTGTGGTGAGGTCTCTCGTTTGAGACTTCTAGGGGATAATGTACATTCTACAAGGATTGCTTTTGTTGAGTTTGTCCATGCCGAGTGTGCCATCATGGCTCTGAATTGCAGTGGGATGATTTTGGGTACACTGCCTGTCAGGGTGAGCCCTTCTAAGACACCGGTGAAGCCACGTTTAAATCGAGTGGCGTCGAACTGACCGCTTGAGCCAAGCTGGATTGTTTACGGGAAGATCGCTTAACCATCACCTATAGCCTTCCGCGATCCAGCGAATTGTGATGCTTTTTTCATTCACCCCTTTTGTCGAAAACTGTTGGAAGGAACTGGTTAAATCAGATCCTTGGGAGTCCGAGTCAGCATCTATGTCTGAGAGTTTATTCATCATGATGGAGAACAACCAATAGACTATCCGCCACTAGATTAATTTCTTTGGCTCCCGATTTTTTTTCCTTCTTTTTCTCAGTGCTACAACTGTTAAAACTGAATCGATATTTAACGTCTTTAGTCTTCACTTGAGGACAATCTCAGTGTCGTTTATAATTTCTCTAAAAAAAAGG] [+] EMBL AK103702 [AAAAAAAAATGGCCAAAACCTTGTAAAAAGCAAAACCCACTCGCCACTAATCGACGCCATTGGCGAGAGCTCGAGCGCGCAACACCACCACGCGGTAGCCTCCCCCAACCTCCACCTCCTCCTCCTCCGCCCGCCCCAGAGCCACCGGATGGCCTCGCTTCTGTAGGAGTAGAGGCGTAGAGCCCAGCGCGAGGGAAGGCGGCGATTGATTTGATTTGACCAAGATTGGTCGGCCGTGCCGTCTGGTCTGAGGAGCCCGGCTCTGGGGGATGGCGGCGGTGGCGGGGGGATCGCGCGCGGCTCCACCGGCGGATTCCGCTGCCGTGGCGGCGGTGGCGAAGGAGGCGGAATACCAGAAGGGCGTGCAGAAGCTGGTGGACCTGCTGTCCAAGCTGAACCCGGCTGCCAAGGAGTTCGTCCCCTCGTCGGCGGCGGTCTCGTCGCCGTCCAGGAAGGCGCTGTCGGCGGACGCGCCGGTGTTCGACTACAACTCGATCGGAGGCTGGAACGGGGGCGGCAAGGAATCCGGCGCCGACGCCTACCAGCAGCGTCGGAGGAGGAATGGATACCTCAGTCAAGGAAGGAGGAGGATGAACGAGAGAGCAAGGCATGCAGACAGGGAAGACAGCATTCGGCGAACTGTTTATGTTTCTGATATTGACCATACTGTGACGGAGGAGAGACTTGCTGATATATTTGCTAACTGTGGGCAAGTCGTTGACTGCAGAATCTGTGGTGATCCACACTCAGTTCTAAGGTTTGCATTCATTGAGTTTGCTGATGAAGAGGGCGCAAGAACTGCACTTAACCTTGGTGGCACAATGCTTGGTTTCTACCCTGTTAGAGTCTTACCTTCAAAGACAGCTATATTGCCTGTGAATCCAAAGTTCCTTCCTAGGACGGAGGATGAGAAGGAAATGGTCATAAGAACTGTTTATTGTACAAACATAGATAAGAAGGTTACTCAATTAGATGTAAAGAATTTCTTTGAAGAACTTTGTGGTGAGGTCTCTCGTTTGAGACTTCTAGGGGATAATGTACATTCTACAAGGATTGCTTTTGTTGAGTTTGTCCATGCCGAGTGTGCCATCATGGCTCTGAATTGCAGTGGGATGATTTTGGGTACACTGCCTGTCAGGGTGAGCCCTTCTAAGACACCGGTGAAGCCACGTTTAAATCGAGTGGCGTCGAACTGACCGCTTGAGCCAAGCTGGATTGTTTACGGGAAGATCGCTTAACCATCACCTATAGCCTTCCGCGATCCAGCGAATTGTGATGCTTTTTTCATTCACCCCTTTTGTCGAAAACTGTTGGAAGGAACTGGTTAAATCAGATCCTTGGGAGTCCGAGTCAGCATCTATGTCTGAGAGTTTATTCATCATGATGGAGAACAACCAATAGACTATCCGCCACTAGATTAATTTCTTTGGCTCCCGATTTTTTTTCCTTCTTTTTCTCAGTGCTACAACTGTTAAAACTGAATCGATATTTAACGTCTTTAGTCTTCACTTGAGGACAATCTC ] [+] EMBL CB680102 [ GCAACACCTTCACGCGGTAGCCTCCCCCAACCTCCACCTCCTCCTCCTCCGCCCGCCCCAGAGCCACCGGATGGCCTCGCTTCTGTAGGAGTAGAGGCGTAGAGCCCAGCGCGAGGGAAGGCGGCGATTGATTTGATTTGACCAAGATTGGTCGGCCGTGCCGTCTGGTCTGAGGAGCCCGGCTCTGGGGGATGGCGGCGGTGGCGGGGGGATCGCGCGCGGCTCCACCGGCGGATTCCGCTGCCGTGGCGGCGGTGGCGAAGGAGGCGGAATACCAGAAGGGCGTGCAGAAGCTGGTGGACCTGCTGTCCAAGCTGAACCCGGCTGCCAAGGAGTTCGTCCCCTCGTCGGCGGCGGTCTCGTCGCCGTCCAGGAAGGCGCTGTCGGCGGACGCGCCGGTGTTCGACTACAACTCGATCGGAGGCTGGAACGGGGGCGGCAAGGAATCCGGCGCCGACGCCTACCAGCAGCGTCGGAGGAGGAATGGATACCTCAGTCAAGGAAGGAGGAGGATGAACGAGAGAGCAAGGCATGCAGACAGGGAAGACAGCATTCGGCGAACTGTTTATGTTTCTGATATTGACCATACTGTGACGGAGGAGAGACTTGCTGATATATTTGCTAACTGTGGGCAAGTCGTTGACTGCAGAATCTGTGGTGATCCACACTCAGTTCTAAGGTTTGCATTCATTGAGTTTGCTGATGAAGAGGGCGCAAGAACTGCACTTAACCTTGGTGGCACAAT ] [+] EMBL CB674593 [ AGCCACCGGATGGCCTCGCTTCTGTAGGAGTAGAGGCGTAGAGCCCAGCGCGAGGGAAGGCGGCGATTGATTTGATTTGACCAAGATTGGTCGGCCGTGCCGTCTGGTCTGAGGAGCCCGGCTCTGGGGGATGGCGGCGGTGGCGGGGGGATCGCGCGCGGCTCCACCGGCGGATTCCGCTGCCGTGGCGGCGGTGGCGAAGGAGGCGGAATACCAGAAGGGCGTGCAGAAGCTGGTGGACCTGCTGTCCAAGCTGAACCCGGCTGCCAAGGAGTTCGTCCCCTCGTCGGCGGCGGTCTCGTCGCCGTCCAGGAAGGCGCTGTCGGCGGACGCGCCGGTGTTCGACTACAACTCGATCGGAGGCTGGAACGGGGGCGGCAAGGAATCCGGCGCCGACGCCTACCAGCAGCGTCGGAGGAGGAATGGATACCTCAGTCCAGGAAGGAGGAGGATGAACGAGAGAGCAAGGCATGCAGACAGGGAAGACAGCATTCGGCGAACTGTTTATGTTTCTGATATTGACCATACTGTGACGGAGGAGAGACTTGCTGATA ] [-] EMBL CB674594 [ GTTTGCTGATGAAGAGGGCGCAAGAACTGCACTTAACCTTGGTGGCACAATGCTTGGTTTCTACCCTGTTAGAGTCTTACCTTCAAAGACAGCTATATTGCCTGTGAATCCAAAGTTCCTTCCTAGGACGGAGGATGAGAAGGAAATGGTCATAAGAACTGTTTATTGTACAAACATAGATAAGAAGGTTACTCAATTAGATGTAAAGAATTTCTTTGAAGAACTTTGTGGTGAGGTCTCTCGTTTGAGACTTCTAGGGGATAATGTACATTCTACAAGGATTGCTTTTGTTGAGTTTGTCCATGCCGAGTGTGCCATCATGGCTCTGAATTGCAGTGGGATGATTTTGGGTACACTGCCTGTCAGGGTGAGCCCTTCTAAGACACCGGTGAAGCCACGTTTAAATCGAGTGGCGTCGAACTGACCGCTTGAGCCAAGCTGGATTGTTTACGGGAAGATCGCTTAACCATCACCTATAGCCTTCCGCGATCCAGCGAATTGTGATGCTTTTTTCATTCACCCCTTTTGTCGAAAACTGTTGGAAGGAACTGGTTAAATCAGATCCTTGGGAGTCCGAGTCAGCATCTATGTCTGAGAGTTTATTCATCATGATGGAGAACAACCAATAGACTATCCGCCACTAGATTAATTTCTTTGGCTCCCGATTTTTTTTCCTTCTTTTTCTCAGTGCTACAACTGTTAAAACTGAATCGATATTTAACGTCTTTAGTCTTCACTTGAGGACAATCTCAGTGTCGTTTATAATTTCTCTAAAAAAAAGG] consensusID : consensus_8073#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 825 fasta sequence [GTACTGATCTGCTTTTACTTTGCATGCATGCACAACGGTAGACTGAAGATATCCTTTATTATNTAATCAATAGCATATCGCTGTTTTTGTTCTTGATGGTAGTTCTCTTAATGAATGGTTAGAATTTGTTTCCACAAGTAACAGATGGTTAGAATTTGTTTCTATCAGGGACAACCAAATTAAAGTGTTTTCCTTTATTCTTTATAATTGGTAGTATATTTCTCTCTCTCTTTTTTTCCCTAGTAGCTGTACTGTCATATTTTATATAGTGAATTAGCTGATCTGGCACAAACCTAATATGTTGTATAAAATATGTTCTCTTTGCAGGTCTCTCGTTTGAGACTTCTAGGGGATAATGTACATTCTACAAGGATTGCTTTTGTTGAGTTTGTCCATGCCGAGTGTGCCATCATGGCTCTGAATTGCAGTGGGATGATTTTGGGTACACTGCCTGTCAGGGTGAGCCCTTCTAAGACACCGGTGAAGCCACGTTTAAATCGAGTGGCGTCGAACTGACCGCTTGAGCCAAGCTGGATTGTTTACGGGAAGATCGCTTAACCATCACCTATAGCCTTCCGCGATCCAGCGAATTGTGATGCTTTTTTCATTCACCCCTTTTGTCGAAAACTGTTGGAAGGAACTGGTTAAATCAGATCCTTGGGAGTCCGAGTCAGCATCTATGTCTGAGAGTTTATTCATCATGATGGAGAACAACCAATAGACTATCCGCCACTAGATTAATTTCTTTGGCTCCCGATTTTTTTTCCTTCTTTTTCTCAGTGCTACAACTGTTAAAACTGAATCGATATTTAACGTCTTTAGTCT] [-] EMBL CB680103 [GTACTGATCTGCTTTTACTTTGCATGCATGCACAACGGTAGACTGAAGATATCCTTTATTATNTAATCAATAGCATATCGCTGTTTTTGTTCTTGATGGTAGTTCTCTTAATGAATGGTTAGAATTTGTTTCCACAAGTAACAGATGGTTAGAATTTGTTTCTATCAGGGACAACCAAATTAAAGTGTTTTCCTTTATTCTTTATAATTGGTAGTATATTTCTCTCTCTCTTTTTTTCCCTAGTAGCTGTACTGTCATATTTTATATAGTGAATTAGCTGATCTGGCACAAACCTAATATGTTGTATAAAATATGTTCTCTTTGCAGGTCTCTCGTTTGAGACTTCTAGGGGATAATGTACATTCTACAAGGATTGCTTTTGTTGAGTTTGTCCATGCCGAGTGTGCCATCATGGCTCTGAATTGCAGTGGGATGATTTTGGGTACACTGCCTGTCAGGGTGAGCCCTTCTAAGACACCGGTGAAGCCACGTTTAAATCGAGTGGCGTCGAACTGACCGCTTGAGCCAAGCTGGATTGTTTACGGGAAGATCGCTTAACCATCACCTATAGCCTTCCGCGATCCAGCGAATTGTGATGCTTTTTTCATTCACCCCTTTTGTCGAAAACTGTTGGAAGGAACTGGTTAAATCAGATCCTTGGGAGTCCGAGTCAGCATCTATGTCTGAGAGTTTATTCATCATGATGGAGAACAACCAATAGACTATCCGCCACTAGATTAATTTCTTTGGCTCCCGATTTTTTTTCCTTCTTTTTCTCAGTGCTACAACTGTTAAAACTGAATCGATATTTAACGTCTTTAGTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8073#0 AAAAAAAAATGGCCAAAACCTTGTAAAAAGCAAAACCCACTCGCCACTAATCGACGCCAT 60 consensus_8073#1 ------------------------------------------------------------ consensus_8073#0 TGGCGAGAGCTCGAGCGCGCAACACCACCACGCGGTAGCCTCCCCCAACCTCCACCTCCT 120 consensus_8073#1 ------------------------------------------------------------ consensus_8073#0 CCTCCTCCGCCCGCCCCAGAGCCACCGGATGGCCTCGCTTCTGTAGGAGTAGAGGCGTAG 180 consensus_8073#1 ------------------------------------------------------------ consensus_8073#0 AGCCCAGCGCGAGGGAAGGCGGCGATTGATTTGATTTGACCAAGATTGGTCGGCCGTGCC 240 consensus_8073#1 ------------------------------------------------------------ consensus_8073#0 GTCTGGTCTGAGGAGCCCGGCTCTGGGGGATGGCGGCGGTGGCGGGGGGATCGCGCGCGG 300 consensus_8073#1 ------------------------------------------------------------ consensus_8073#0 CTCCACCGGCGGATTCCGCTGCCGTGGCGGCGGTGGCGAAGGAGGCGGAATACCAGAAGG 360 consensus_8073#1 ------------------------------------------------------------ consensus_8073#0 GCGTGCAGAAGCTGGTGGACCTGCTGTCCAAGCTGAACCCGGCTGCCAAGGAGTTCGTCC 420 consensus_8073#1 ------------------------------------------------------------ consensus_8073#0 CCTCGTCGGCGGCGGTCTCGTCGCCGTCCAGGAAGGCGCTGTCGGCGGACGCGCCGGTGT 480 consensus_8073#1 ------------------------------------------------------------ consensus_8073#0 TCGACTACAACTCGATCGGAGGCTGGAACGGGGGCGGCAAGGAATCCGGCGCCGACGCCT 540 consensus_8073#1 ------------------------------------------------------------ consensus_8073#0 ACCAGCAGCGTCGGAGGAGGAATGGATACCTCAGTCAAGGAAGGAGGAGGATGAACGAGA 600 consensus_8073#1 ------------------------------------------------------------ consensus_8073#0 GAGCAAGGCATGCAGACAGGGAAGACAGCATTCGGCGAACTGTTTATGTTTCTGATATTG 660 consensus_8073#1 -------------------------------GTACTGATCTGCTTTTACTTTGCAT---G 26 ** *** ** * ** ** * consensus_8073#0 ACCATACTGTGACGGAGGAGAGACTTGCTGATATATTTGCTAACTGTGGGCAAGTCGTTG 720 consensus_8073#1 CATGCACAACGGTAGACTGAAGATATCC---TTTATTATNTAATCAATAGCATATCGCTG 83 ** * ** *** * * * **** *** *** *** ** consensus_8073#0 ACTGCAGAATCTGTGGTGATCCACACTCAGTTCTAAGGTTTGCATTCATTGAGTTTGCTG 780 consensus_8073#1 TTTTTGTTCTTGATGGTAGTTCTC--TTAATGA-ATGGTTAGAATTTGTT---TCCACAA 137 * * **** * * * * * * * **** * *** ** * * consensus_8073#0 ATGAAGAGGGCGCAAGAACTGCACTTAACCTTGGTGGCACAATGCTTGGTTTCTACCCTG 840 consensus_8073#1 GTAACAGATGGTTAGAATTTGTTTCTATCAGGGACAACCAAATTAAAGTGTTTTCCTTTA 197 * * * * * ** ** * * * *** * ** * * * consensus_8073#0 TTAGAGTCTTACCTTCAAAGACAGCTATATTGCCTGTGAATCCAAAGTTCCTTCCTAGGA 900 consensus_8073#1 TT----CTTTA---TAATTGGTAG-TATATT-TCTCTCTCTCT---TTTTTTCCCTAGTA 245 ** *** * * * ** ****** ** * ** ** * ***** * consensus_8073#0 CGGAGGATGAGAAGGAAATGGTCATAAGAACTGTTTATTGTACAAACATAGATAAGAAGG 960 consensus_8073#1 -----GCTGT-------ACTGTCATA----TTTTATATAGTGAATTAGCTGATCTGGCAC 289 * ** * ****** * * *** ** * *** * consensus_8073#0 TTACTCAATTAGATGTAAAGAATTTCTTTGAAGAACTTTGTGGTGAGGTCTCTCGTTTGA 1020 consensus_8073#1 AAACCTAATATGTTGTATAAAATATGTTCT-----CTTTGC----AGGTCTCTCGTTTGA 340 ** *** * **** * *** * ** ***** *************** consensus_8073#0 GACTTCTAGGGGATAATGTACATTCTACAAGGATTGCTTTTGTTGAGTTTGTCCATGCCG 1080 consensus_8073#1 GACTTCTAGGGGATAATGTACATTCTACAAGGATTGCTTTTGTTGAGTTTGTCCATGCCG 400 ************************************************************ consensus_8073#0 AGTGTGCCATCATGGCTCTGAATTGCAGTGGGATGATTTTGGGTACACTGCCTGTCAGGG 1140 consensus_8073#1 AGTGTGCCATCATGGCTCTGAATTGCAGTGGGATGATTTTGGGTACACTGCCTGTCAGGG 460 ************************************************************ consensus_8073#0 TGAGCCCTTCTAAGACACCGGTGAAGCCACGTTTAAATCGAGTGGCGTCGAACTGACCGC 1200 consensus_8073#1 TGAGCCCTTCTAAGACACCGGTGAAGCCACGTTTAAATCGAGTGGCGTCGAACTGACCGC 520 ************************************************************ consensus_8073#0 TTGAGCCAAGCTGGATTGTTTACGGGAAGATCGCTTAACCATCACCTATAGCCTTCCGCG 1260 consensus_8073#1 TTGAGCCAAGCTGGATTGTTTACGGGAAGATCGCTTAACCATCACCTATAGCCTTCCGCG 580 ************************************************************ consensus_8073#0 ATCCAGCGAATTGTGATGCTTTTTTCATTCACCCCTTTTGTCGAAAACTGTTGGAAGGAA 1320 consensus_8073#1 ATCCAGCGAATTGTGATGCTTTTTTCATTCACCCCTTTTGTCGAAAACTGTTGGAAGGAA 640 ************************************************************ consensus_8073#0 CTGGTTAAATCAGATCCTTGGGAGTCCGAGTCAGCATCTATGTCTGAGAGTTTATTCATC 1380 consensus_8073#1 CTGGTTAAATCAGATCCTTGGGAGTCCGAGTCAGCATCTATGTCTGAGAGTTTATTCATC 700 ************************************************************ consensus_8073#0 ATGATGGAGAACAACCAATAGACTATCCGCCACTAGATTAATTTCTTTGGCTCCCGATTT 1440 consensus_8073#1 ATGATGGAGAACAACCAATAGACTATCCGCCACTAGATTAATTTCTTTGGCTCCCGATTT 760 ************************************************************ consensus_8073#0 TTTTTCCTTCTTTTTCTCAGTGCTACAACTGTTAAAACTGAATCGATATTTAACGTCTTT 1500 consensus_8073#1 TTTTTCCTTCTTTTTCTCAGTGCTACAACTGTTAAAACTGAATCGATATTTAACGTCTTT 820 ************************************************************ consensus_8073#0 AGTCTTCACTTGAGGACAATCTCAGTGTCGTTTATAATTTCTCTAAAAAAAAGG 1554 consensus_8073#1 AGTCT------------------------------------------------- 825 ***** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||